FFCP PHASE1:Hg19::chr19:54377605..54377620,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr19:54377605..54377620,+ | |||
|coexpression_cluster_id=C482 | |||
|description=CAGE_peak_at_chr19:54377605..54377620,+ | |description=CAGE_peak_at_chr19:54377605..54377620,+ | ||
|id=chr19:54377605..54377620,+ | |id=chr19:54377605..54377620,+ | ||
|ontology_enrichment_celltype=CL:0002057!3.13e-14!42;CL:0000860!6.96e-12!45;CL:0000766!1.13e-09!76;CL:0000557!7.63e-08!71;CL:0002009!2.68e-07!65;CL:0000839!7.94e-07!70;CL:0000144!9.77e-07!625;CL:0002194!9.97e-07!63;CL:0000576!9.97e-07!63;CL:0000040!9.97e-07!63;CL:0000559!9.97e-07!63 | |ontology_enrichment_celltype=CL:0002057!3.13e-14!42;CL:0000860!6.96e-12!45;CL:0000766!1.13e-09!76;CL:0000557!7.63e-08!71;CL:0002009!2.68e-07!65;CL:0000839!7.94e-07!70;CL:0000144!9.77e-07!625;CL:0002194!9.97e-07!63;CL:0000576!9.97e-07!63;CL:0000040!9.97e-07!63;CL:0000559!9.97e-07!63 | ||
|ontology_enrichment_celltype_v019=CL:0000860;1.35e-24;33!CL:0002057;1.35e-24;33!CL:0000473;1.31e-16;39!CL:0000234;1.31e-16;39!CL:0000576;1.17e-10;48!CL:0000766;3.04e-09;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,8.99e-20,42;CL:0002057,8.99e-20,42;CL:0000473,7.01e-17,48;CL:0000234,7.01e-17,48;CL:0000766,5.97e-16,72;CL:0000557,4.34e-13,67;CL:0002009,3.27e-12,61;CL:0000839,8.71e-12,66;CL:0002194,2.58e-11,59;CL:0000576,2.58e-11,59;CL:0000040,2.58e-11,59;CL:0000559,2.58e-11,59;CL:0000763,1.52e-09,108;CL:0000049,1.52e-09,108;CL:0000048,3.41e-08,427;CL:0000134,9.86e-08,354;CL:0000034,1.35e-07,441;CL:0000723,1.52e-07,433;CL:0002320,1.76e-07,361 | |||
|ontology_enrichment_development_v019=CL:0002057;2.26e-15;42 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003081!3.29e-12!216;UBERON:0000926!5.33e-10!448;UBERON:0004120!5.33e-10!448;UBERON:0006603!5.33e-10!448;UBERON:0002204!1.28e-07!167;UBERON:0002371!1.86e-07!80 | |ontology_enrichment_uberon=UBERON:0003081!3.29e-12!216;UBERON:0000926!5.33e-10!448;UBERON:0004120!5.33e-10!448;UBERON:0006603!5.33e-10!448;UBERON:0002204!1.28e-07!167;UBERON:0002371!1.86e-07!80 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000926,7.05e-15,315;UBERON:0004120,7.05e-15,315;UBERON:0006603,7.05e-15,315;UBERON:0003081,9.78e-14,203;UBERON:0002371,4.90e-12,76;UBERON:0001474,9.78e-11,82;UBERON:0002390,1.54e-09,98;UBERON:0003061,1.54e-09,98;UBERON:0004765,7.47e-09,90;UBERON:0002204,9.89e-09,167;UBERON:0002405,3.90e-08,93;UBERON:0002193,3.98e-08,108;UBERON:0001434,5.16e-08,100;UBERON:0002384,1.34e-07,371 | |||
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|short_description=p@chr19:54377605..54377620,+ | |short_description=p@chr19:54377605..54377620,+ | ||
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Latest revision as of 17:04, 27 July 2015
Short description: | p@chr19:54377605..54377620, + |
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Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:54377605..54377620, + |
Coexpression cluster: | C482_CD14_Mast_Fibroblast_Smooth_Neutrophils_Basophils_Mesenchymal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 8.99e-20 | 42 |
CD14-positive, CD16-negative classical monocyte | 8.99e-20 | 42 |
defensive cell | 7.01e-17 | 48 |
phagocyte | 7.01e-17 | 48 |
myeloid leukocyte | 5.97e-16 | 72 |
granulocyte monocyte progenitor cell | 4.34e-13 | 67 |
macrophage dendritic cell progenitor | 3.27e-12 | 61 |
myeloid lineage restricted progenitor cell | 8.71e-12 | 66 |
monopoietic cell | 2.58e-11 | 59 |
monocyte | 2.58e-11 | 59 |
monoblast | 2.58e-11 | 59 |
promonocyte | 2.58e-11 | 59 |
myeloid cell | 1.52e-09 | 108 |
common myeloid progenitor | 1.52e-09 | 108 |
multi fate stem cell | 3.41e-08 | 427 |
mesenchymal cell | 9.86e-08 | 354 |
stem cell | 1.35e-07 | 441 |
somatic stem cell | 1.52e-07 | 433 |
connective tissue cell | 1.76e-07 | 361 |
Ontology term | p-value | n |
---|---|---|
mesoderm | 7.05e-15 | 315 |
mesoderm-derived structure | 7.05e-15 | 315 |
presumptive mesoderm | 7.05e-15 | 315 |
lateral plate mesoderm | 9.78e-14 | 203 |
bone marrow | 4.90e-12 | 76 |
bone element | 9.78e-11 | 82 |
hematopoietic system | 1.54e-09 | 98 |
blood island | 1.54e-09 | 98 |
skeletal element | 7.47e-09 | 90 |
musculoskeletal system | 9.89e-09 | 167 |
immune system | 3.90e-08 | 93 |
hemolymphoid system | 3.98e-08 | 108 |
skeletal system | 5.16e-08 | 100 |
connective tissue | 1.34e-07 | 371 |