FFCP PHASE1:Hg19::chr19:54377633..54377725,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr19:54377633..54377725,+
|short_description=p@chr19:54377633..54377725,+
|description=CAGE_peak_at_chr19:54377633..54377725,+
|association_with_transcript=NA
...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr19:54377633..54377725,+ | |||
|coexpression_cluster_id=C482 | |||
|description=CAGE_peak_at_chr19:54377633..54377725,+ | |||
|id=chr19:54377633..54377725,+ | |||
|ontology_enrichment_celltype=CL:0002057!6.52e-16!42;CL:0000860!5.68e-13!45;CL:0000766!1.88e-11!76;CL:0000048!8.02e-11!430;CL:0000723!5.43e-10!436;CL:0000557!9.85e-10!71;CL:0000034!1.72e-09!444;CL:0000144!1.83e-08!625;CL:0002009!2.06e-08!65;CL:0000839!5.17e-08!70;CL:0002194!7.66e-08!63;CL:0000576!7.66e-08!63;CL:0000040!7.66e-08!63;CL:0000559!7.66e-08!63;CL:0000763!3.74e-07!112;CL:0000049!3.74e-07!112;CL:0002371!5.24e-07!591;CL:0000222!7.09e-07!119;CL:0000134!9.06e-07!358 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.66e-18;33!CL:0002057;1.66e-18;33!CL:0000473;1.57e-13;39!CL:0000234;1.57e-13;39!CL:0000576;4.55e-08;48!CL:0000766;1.14e-07;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.06e-15,42;CL:0002057,1.06e-15,42;CL:0000473,2.48e-14,48;CL:0000234,2.48e-14,48;CL:0000766,8.15e-13,72;CL:0000048,5.51e-12,427;CL:0000723,3.97e-11,433;CL:0000557,5.46e-11,67;CL:0000034,1.37e-10,441;CL:0002009,1.34e-09,61;CL:0000839,3.61e-09,66;CL:0002194,5.45e-09,59;CL:0000576,5.45e-09,59;CL:0000040,5.45e-09,59;CL:0000559,5.45e-09,59;CL:0000763,8.35e-08,108;CL:0000049,8.35e-08,108;CL:0000134,1.47e-07,354;CL:0002320,1.93e-07,361;CL:0000222,2.73e-07,121;CL:0000057,8.47e-07,76 | |||
|ontology_enrichment_development_v019=CL:0002057;4.11e-12;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003081!1.00e-17!216;UBERON:0000926!3.77e-16!448;UBERON:0004120!3.77e-16!448;UBERON:0006603!3.77e-16!448;UBERON:0002204!1.59e-13!167;UBERON:0003914!1.12e-08!118;UBERON:0002371!1.17e-08!80;UBERON:0005256!1.33e-07!143;UBERON:0002390!1.37e-07!102;UBERON:0003061!1.37e-07!102;UBERON:0004765!2.32e-07!101;UBERON:0001434!2.32e-07!101;UBERON:0001474!2.48e-07!86;UBERON:0002193!3.59e-07!112;UBERON:0004535!4.83e-07!110;UBERON:0001009!5.90e-07!113 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000926,3.48e-25,315;UBERON:0004120,3.48e-25,315;UBERON:0006603,3.48e-25,315;UBERON:0003081,1.80e-17,203;UBERON:0002204,2.05e-14,167;UBERON:0002371,8.84e-10,76;UBERON:0002390,1.84e-08,98;UBERON:0003061,1.84e-08,98;UBERON:0003914,2.04e-08,117;UBERON:0001474,3.88e-08,82;UBERON:0002193,6.53e-08,108;UBERON:0001434,7.14e-08,100;UBERON:0002384,2.00e-07,371;UBERON:0004765,3.55e-07,90;UBERON:0005256,5.35e-07,122;UBERON:0002405,6.07e-07,93;UBERON:0004535,9.39e-07,109 | |||
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| ||
|short_description=p@chr19:54377633..54377725,+ | |||
}} | }} |
Latest revision as of 17:04, 27 July 2015
Short description: | p@chr19:54377633..54377725, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:54377633..54377725, + |
Coexpression cluster: | C482_CD14_Mast_Fibroblast_Smooth_Neutrophils_Basophils_Mesenchymal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.06e-15 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.06e-15 | 42 |
defensive cell | 2.48e-14 | 48 |
phagocyte | 2.48e-14 | 48 |
myeloid leukocyte | 8.15e-13 | 72 |
multi fate stem cell | 5.51e-12 | 427 |
somatic stem cell | 3.97e-11 | 433 |
granulocyte monocyte progenitor cell | 5.46e-11 | 67 |
stem cell | 1.37e-10 | 441 |
macrophage dendritic cell progenitor | 1.34e-09 | 61 |
myeloid lineage restricted progenitor cell | 3.61e-09 | 66 |
monopoietic cell | 5.45e-09 | 59 |
monocyte | 5.45e-09 | 59 |
monoblast | 5.45e-09 | 59 |
promonocyte | 5.45e-09 | 59 |
myeloid cell | 8.35e-08 | 108 |
common myeloid progenitor | 8.35e-08 | 108 |
mesenchymal cell | 1.47e-07 | 354 |
connective tissue cell | 1.93e-07 | 361 |
mesodermal cell | 2.73e-07 | 121 |
fibroblast | 8.47e-07 | 76 |
Ontology term | p-value | n |
---|---|---|
mesoderm | 3.48e-25 | 315 |
mesoderm-derived structure | 3.48e-25 | 315 |
presumptive mesoderm | 3.48e-25 | 315 |
lateral plate mesoderm | 1.80e-17 | 203 |
musculoskeletal system | 2.05e-14 | 167 |
bone marrow | 8.84e-10 | 76 |
hematopoietic system | 1.84e-08 | 98 |
blood island | 1.84e-08 | 98 |
epithelial tube | 2.04e-08 | 117 |
bone element | 3.88e-08 | 82 |
hemolymphoid system | 6.53e-08 | 108 |
skeletal system | 7.14e-08 | 100 |
connective tissue | 2.00e-07 | 371 |
skeletal element | 3.55e-07 | 90 |
trunk mesenchyme | 5.35e-07 | 122 |
immune system | 6.07e-07 | 93 |
cardiovascular system | 9.39e-07 | 109 |