FFCP PHASE1:Hg19::chr19:56807111..56807126,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr19:56807111..56807126,+ | |||
|coexpression_cluster_id=C1670 | |coexpression_cluster_id=C1670 | ||
|description=CAGE_peak_at_chr19:56807111..56807126,+ | |description=CAGE_peak_at_chr19:56807111..56807126,+ | ||
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|ontology_enrichment_celltype=CL:0002076!2.15e-18!43;CL:0002159!2.72e-18!13;CL:0000244!1.70e-16!4;CL:0000731!1.70e-16!4;CL:0002166!5.73e-13!3;CL:0002621!9.50e-13!3;CL:0000066!1.58e-12!254;CL:0000223!2.25e-12!59;CL:0002328!9.21e-12!3;CL:0000240!1.24e-10!6;CL:0000311!1.24e-10!6;CL:0000079!1.24e-10!6;CL:0000237!1.24e-10!6;CL:0000036!1.24e-10!6;CL:0000357!1.24e-10!6;CL:0000114!1.24e-10!6;CL:0002251!1.83e-10!21;CL:0002077!7.51e-10!33;CL:0002368!1.37e-09!13;CL:0002327!4.75e-09!4;CL:0000575!8.42e-09!2;CL:0000312!1.48e-07!5 | |ontology_enrichment_celltype=CL:0002076!2.15e-18!43;CL:0002159!2.72e-18!13;CL:0000244!1.70e-16!4;CL:0000731!1.70e-16!4;CL:0002166!5.73e-13!3;CL:0002621!9.50e-13!3;CL:0000066!1.58e-12!254;CL:0000223!2.25e-12!59;CL:0002328!9.21e-12!3;CL:0000240!1.24e-10!6;CL:0000311!1.24e-10!6;CL:0000079!1.24e-10!6;CL:0000237!1.24e-10!6;CL:0000036!1.24e-10!6;CL:0000357!1.24e-10!6;CL:0000114!1.24e-10!6;CL:0002251!1.83e-10!21;CL:0002077!7.51e-10!33;CL:0002368!1.37e-09!13;CL:0002327!4.75e-09!4;CL:0000575!8.42e-09!2;CL:0000312!1.48e-07!5 | ||
|ontology_enrichment_celltype_v019=CL:0002159;4.15e-31;14!CL:0002166;1.18e-28;3!CL:0002621;4.52e-28;3!CL:0000244;8.78e-22;4!CL:0000731;8.78e-22;4!CL:0000575;1.03e-18;2!CL:0002251;6.78e-16;20!CL:0002077;3.11e-14;34!CL:0000240;4.71e-14;6!CL:0000311;4.71e-14;6!CL:0000079;4.71e-14;6!CL:0000237;4.71e-14;6!CL:0002623;5.30e-13;3!CL:0002076;1.74e-10;42!CL:0002336;3.15e-10;1!CL:0002261;3.15e-10;1!CL:0002170;3.15e-10;1!CL:0000312;3.71e-08;5!CL:0000622;3.71e-08;5!CL:0000154;6.20e-07;6 | |ontology_enrichment_celltype_v019=CL:0002159;4.15e-31;14!CL:0002166;1.18e-28;3!CL:0002621;4.52e-28;3!CL:0000244;8.78e-22;4!CL:0000731;8.78e-22;4!CL:0000575;1.03e-18;2!CL:0002251;6.78e-16;20!CL:0002077;3.11e-14;34!CL:0000240;4.71e-14;6!CL:0000311;4.71e-14;6!CL:0000079;4.71e-14;6!CL:0000237;4.71e-14;6!CL:0002623;5.30e-13;3!CL:0002076;1.74e-10;42!CL:0002336;3.15e-10;1!CL:0002261;3.15e-10;1!CL:0002170;3.15e-10;1!CL:0000312;3.71e-08;5!CL:0000622;3.71e-08;5!CL:0000154;6.20e-07;6 | ||
|ontology_enrichment_celltype_v019_2=CL:0002159,3.72e-31,14;CL:0002166,1.30e-28,3;CL:0002621,4.32e-28,3;CL:0000244,8.19e-22,4;CL:0000731,8.19e-22,4;CL:0000575,1.03e-18,2;CL:0002077,4.17e-16,34;CL:0002251,7.06e-16,20;CL:0000240,3.44e-14,6;CL:0000311,3.44e-14,6;CL:0000079,3.44e-14,6;CL:0000237,3.44e-14,6;CL:0000036,3.44e-14,6;CL:0000357,3.44e-14,6;CL:0000114,3.44e-14,6;CL:0002623,7.40e-13,3;CL:0002336,2.28e-10,1;CL:0002261,2.28e-10,1;CL:0002170,2.28e-10,1;CL:0000066,5.61e-10,253;CL:0002076,8.71e-10,42;CL:0000221,1.12e-08,72;CL:0000312,3.27e-08,5;CL:0000622,4.53e-08,5;CL:0000223,6.96e-07,58;CL:0000154,7.30e-07,6 | |||
|ontology_enrichment_development_v019=CL:0000357;4.71e-14;6!CL:0000114;4.71e-14;6 | |ontology_enrichment_development_v019=CL:0000357;4.71e-14;6!CL:0000114;4.71e-14;6 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000365!3.34e-13!5;UBERON:0001949!9.50e-13!3;UBERON:0004815!9.21e-12!3;UBERON:0002031!9.21e-12!3;UBERON:0005910!5.28e-11!6;UBERON:0001004!1.54e-10!72;UBERON:0000161!1.82e-10!35;UBERON:0000166!3.62e-10!21;UBERON:0004119!4.53e-10!169;UBERON:0000925!4.53e-10!169;UBERON:0006595!4.53e-10!169;UBERON:0001708!8.00e-10!4;UBERON:0001704!8.00e-10!4;UBERON:0003102!1.30e-09!95;UBERON:0000165!2.72e-09!28;UBERON:0000930!2.72e-09!28;UBERON:0001911!4.75e-09!4;UBERON:0005333!4.75e-09!4;UBERON:0008425!4.75e-09!4;UBERON:0005311!4.75e-09!4;UBERON:0002185!6.25e-09!4;UBERON:0001444!1.11e-08!48;UBERON:0000076!1.62e-07!8;UBERON:0004807!3.12e-07!28;UBERON:0005911!7.57e-07!82 | |ontology_enrichment_uberon=UBERON:0000365!3.34e-13!5;UBERON:0001949!9.50e-13!3;UBERON:0004815!9.21e-12!3;UBERON:0002031!9.21e-12!3;UBERON:0005910!5.28e-11!6;UBERON:0001004!1.54e-10!72;UBERON:0000161!1.82e-10!35;UBERON:0000166!3.62e-10!21;UBERON:0004119!4.53e-10!169;UBERON:0000925!4.53e-10!169;UBERON:0006595!4.53e-10!169;UBERON:0001708!8.00e-10!4;UBERON:0001704!8.00e-10!4;UBERON:0003102!1.30e-09!95;UBERON:0000165!2.72e-09!28;UBERON:0000930!2.72e-09!28;UBERON:0001911!4.75e-09!4;UBERON:0005333!4.75e-09!4;UBERON:0008425!4.75e-09!4;UBERON:0005311!4.75e-09!4;UBERON:0002185!6.25e-09!4;UBERON:0001444!1.11e-08!48;UBERON:0000076!1.62e-07!8;UBERON:0004807!3.12e-07!28;UBERON:0005911!7.57e-07!82 | ||
|ontology_enrichment_uberon_v019=UBERON:0001949;4.52e-28;3!UBERON:0000486;2.13e-27;12!UBERON:0001708;1.16e-21;4!UBERON:0008895;1.16e-21;4!UBERON:0000365;1.49e-17;5!UBERON:0011159;1.86e-17;5!UBERON:0005910;1.00e-14;6!UBERON:0003929;2.18e-12;7!UBERON:0000161;7.02e-12;19!UBERON:0000166;7.02e-12;19!UBERON:0003729;1.99e-11;13!UBERON:0000165;3.09e-11;28!UBERON:0003350;6.61e-11;8!UBERON:0001828;6.61e-11;8!UBERON:0010371;1.86e-10;31!UBERON:0007029;3.15e-10;1!UBERON:0000964;7.83e-10;4!UBERON:0010409;7.83e-10;4!UBERON:0011137;3.20e-08;11!UBERON:0010323;3.20e-08;11!UBERON:0000344;1.75e-07;20!UBERON:0007811;2.29e-07;52!UBERON:0001444;3.87e-07;48!UBERON:0000033;4.39e-07;50!UBERON:0001044;6.20e-07;6!UBERON:0003293;6.20e-07;6!UBERON:0003294;6.20e-07;6!UBERON:0010047;6.20e-07;6!UBERON:0003408;6.20e-07;6!UBERON:0000167;6.20e-07;6!UBERON:0005911;9.87e-07;36 | |ontology_enrichment_uberon_v019=UBERON:0001949;4.52e-28;3!UBERON:0000486;2.13e-27;12!UBERON:0001708;1.16e-21;4!UBERON:0008895;1.16e-21;4!UBERON:0000365;1.49e-17;5!UBERON:0011159;1.86e-17;5!UBERON:0005910;1.00e-14;6!UBERON:0003929;2.18e-12;7!UBERON:0000161;7.02e-12;19!UBERON:0000166;7.02e-12;19!UBERON:0003729;1.99e-11;13!UBERON:0000165;3.09e-11;28!UBERON:0003350;6.61e-11;8!UBERON:0001828;6.61e-11;8!UBERON:0010371;1.86e-10;31!UBERON:0007029;3.15e-10;1!UBERON:0000964;7.83e-10;4!UBERON:0010409;7.83e-10;4!UBERON:0011137;3.20e-08;11!UBERON:0010323;3.20e-08;11!UBERON:0000344;1.75e-07;20!UBERON:0007811;2.29e-07;52!UBERON:0001444;3.87e-07;48!UBERON:0000033;4.39e-07;50!UBERON:0001044;6.20e-07;6!UBERON:0003293;6.20e-07;6!UBERON:0003294;6.20e-07;6!UBERON:0010047;6.20e-07;6!UBERON:0003408;6.20e-07;6!UBERON:0000167;6.20e-07;6!UBERON:0005911;9.87e-07;36 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001949,4.32e-28,3;UBERON:0001708,1.24e-21,4;UBERON:0008895,1.24e-21,4;UBERON:0000033,6.97e-18,56;UBERON:0000365,1.41e-17,5;UBERON:0011159,1.97e-17,5;UBERON:0000153,5.47e-16,62;UBERON:0007811,5.47e-16,62;UBERON:0003102,1.27e-15,99;UBERON:0005910,9.58e-15,6;UBERON:0010188,1.26e-14,6;UBERON:0002539,1.26e-14,6;UBERON:0008816,1.26e-14,6;UBERON:0003729,1.78e-11,13;UBERON:0003350,6.50e-11,8;UBERON:0001828,6.50e-11,8;UBERON:0000165,8.04e-11,29;UBERON:0000930,8.04e-11,29;UBERON:0001444,9.14e-11,49;UBERON:0007029,2.74e-10,1;UBERON:0000166,3.37e-10,22;UBERON:0000964,7.83e-10,4;UBERON:0010409,7.83e-10,4;UBERON:0004348,7.83e-10,4;UBERON:0005427,7.83e-10,4;UBERON:0010323,3.28e-08,11;UBERON:0000344,1.63e-07,20;UBERON:0001044,7.30e-07,6;UBERON:0003293,7.30e-07,6;UBERON:0003294,7.30e-07,6;UBERON:0010047,7.30e-07,6;UBERON:0000167,7.30e-07,6 | |||
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|short_description=p@chr19:56807111..56807126,+ | |short_description=p@chr19:56807111..56807126,+ | ||
}} | }} |
Latest revision as of 17:39, 27 July 2015
Short description: | p@chr19:56807111..56807126, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:56807111..56807126, + |
Coexpression cluster: | C1670_Urothelial_Mallassezderived_squamous_Gingival_Mammary_oral_Keratinocyte |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
general ecto-epithelial cell | 3.72e-31 | 14 |
epithelial cell of Malassez | 1.30e-28 | 3 |
gingival epithelial cell | 4.32e-28 | 3 |
transitional epithelial cell | 8.19e-22 | 4 |
urothelial cell | 8.19e-22 | 4 |
corneal epithelial cell | 1.03e-18 | 2 |
ecto-epithelial cell | 4.17e-16 | 34 |
epithelial cell of alimentary canal | 7.06e-16 | 20 |
stratified squamous epithelial cell | 3.44e-14 | 6 |
keratin accumulating cell | 3.44e-14 | 6 |
stratified epithelial cell | 3.44e-14 | 6 |
keratinizing barrier epithelial cell | 3.44e-14 | 6 |
epithelial fate stem cell | 3.44e-14 | 6 |
stratified epithelial stem cell | 3.44e-14 | 6 |
surface ectodermal cell | 3.44e-14 | 6 |
acinar cell of salivary gland | 7.40e-13 | 3 |
buccal mucosa cell | 2.28e-10 | 1 |
endothelial cell of viscerocranial mucosa | 2.28e-10 | 1 |
keratinized cell of the oral mucosa | 2.28e-10 | 1 |
epithelial cell | 5.61e-10 | 253 |
endo-epithelial cell | 8.71e-10 | 42 |
ectodermal cell | 1.12e-08 | 72 |
keratinocyte | 3.27e-08 | 5 |
acinar cell | 4.53e-08 | 5 |
endodermal cell | 6.96e-07 | 58 |
protein secreting cell | 7.30e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
gingival epithelium | 4.32e-28 | 3 |
jaw skeleton | 1.24e-21 | 4 |
splanchnocranium | 1.24e-21 | 4 |
head | 6.97e-18 | 56 |
urothelium | 1.41e-17 | 5 |
primary subdivision of cranial skeletal system | 1.97e-17 | 5 |
anterior region of body | 5.47e-16 | 62 |
craniocervical region | 5.47e-16 | 62 |
surface structure | 1.27e-15 | 99 |
transitional epithelium | 9.58e-15 | 6 |
protuberance | 1.26e-14 | 6 |
pharyngeal arch | 1.26e-14 | 6 |
embryonic head | 1.26e-14 | 6 |
mouth mucosa | 1.78e-11 | 13 |
epithelium of mucosa | 6.50e-11 | 8 |
gingiva | 6.50e-11 | 8 |
mouth | 8.04e-11 | 29 |
stomodeum | 8.04e-11 | 29 |
subdivision of head | 9.14e-11 | 49 |
surface | 2.74e-10 | 1 |
oral opening | 3.37e-10 | 22 |
cornea | 7.83e-10 | 4 |
eye surface | 7.83e-10 | 4 |
optic eminence | 7.83e-10 | 4 |
corneal primordium | 7.83e-10 | 4 |
cranial skeletal system | 3.28e-08 | 11 |
mucosa | 1.63e-07 | 20 |
saliva-secreting gland | 7.30e-07 | 6 |
gland of oral region | 7.30e-07 | 6 |
gland of foregut | 7.30e-07 | 6 |
oral gland | 7.30e-07 | 6 |
oral cavity | 7.30e-07 | 6 |