FFCP PHASE1:Hg19::chr1:108247510..108247526,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr1:108247510..108247526,- | |||
|description=CAGE_peak_at_chr1:108247510..108247526,- | |||
|id=chr1:108247510..108247526,- | |||
|ontology_enrichment_celltype=CL:0000055!7.38e-14!180;CL:0002539!1.83e-13!10;CL:0002620!2.02e-12!23;CL:0000359!1.07e-11!32;CL:0000680!1.34e-09!57;CL:0000056!1.34e-09!57;CL:0000355!1.34e-09!57;CL:0000192!3.52e-08!42;CL:0000514!3.52e-08!42;CL:0000197!5.00e-08!6;CL:0000098!5.00e-08!6;CL:0002167!5.00e-08!6;CL:0000057!5.23e-08!75;CL:0002334!7.62e-07!12;CL:0002327!9.01e-07!4 | |||
|ontology_enrichment_celltype_v019=CL:0002539;2.74e-18;10!CL:0000197;3.70e-17;6!CL:0000098;3.70e-17;6!CL:0002167;3.70e-17;6!CL:0002620;5.61e-17;23!CL:0002591;1.25e-12;1!CL:0000359;5.28e-09;32!CL:0000047;9.01e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002539,2.51e-18,10;CL:0000197,2.97e-17,6;CL:0000098,2.97e-17,6;CL:0002167,2.97e-17,6;CL:0002620,6.47e-17,23;CL:0002591,1.40e-12,1;CL:0000359,9.86e-09,32 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:17;1.06e-09;5!DOID:450;1.06e-09;5!DOID:66;1.06e-09;5!DOID:423;1.06e-09;5!DOID:0080000;1.06e-09;5!DOID:11722;1.06e-09;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,1.44e-09,5;DOID:450,1.44e-09,5;DOID:66,1.44e-09,5;DOID:423,1.44e-09,5;DOID:0080000,1.44e-09,5;DOID:11722,1.44e-09,5 | |||
|ontology_enrichment_uberon=UBERON:0004237!1.83e-13!10;UBERON:0004695!1.83e-13!10;UBERON:0002111!1.83e-13!10;UBERON:0004178!1.83e-13!10;UBERON:0002097!3.91e-10!40;UBERON:0002199!5.96e-10!45;UBERON:0002416!5.96e-10!45;UBERON:0001637!1.54e-09!42;UBERON:0003509!1.54e-09!42;UBERON:0004572!1.54e-09!42;UBERON:0001134!1.07e-08!61;UBERON:0002036!1.07e-08!61;UBERON:0003082!1.07e-08!61;UBERON:0001135!1.45e-08!15;UBERON:0002385!2.71e-08!63;UBERON:0001015!2.71e-08!63;UBERON:0000383!2.71e-08!63;UBERON:0004573!7.01e-08!33;UBERON:0004571!7.01e-08!33;UBERON:0000475!8.97e-08!365;UBERON:0000947!2.27e-07!21;UBERON:0010191!2.27e-07!21;UBERON:0000486!3.32e-07!82;UBERON:0004290!4.55e-07!70;UBERON:0000914!4.96e-07!83;UBERON:0002329!4.96e-07!83;UBERON:0003077!4.96e-07!83;UBERON:0003059!4.96e-07!83;UBERON:0007282!4.96e-07!83;UBERON:0009618!4.96e-07!83;UBERON:0007285!4.96e-07!83;UBERON:0001911!9.01e-07!4;UBERON:0005333!9.01e-07!4;UBERON:0008425!9.01e-07!4;UBERON:0005311!9.01e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0004237;2.74e-18;10!UBERON:0004695;2.74e-18;10!UBERON:0002111;2.74e-18;10!UBERON:0004178;2.74e-18;10!UBERON:0001135;2.79e-12;15!UBERON:0002385;5.87e-09;31!UBERON:0001015;5.87e-09;31!UBERON:0000383;5.87e-09;31!UBERON:0000947;7.89e-09;21!UBERON:0010191;7.89e-09;21!UBERON:0002097;2.10e-07;41!UBERON:0000078;6.07e-07;2!UBERON:0002012;6.07e-07;2!UBERON:0008886;6.07e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004237,2.51e-18,10;UBERON:0004695,2.51e-18,10;UBERON:0002111,2.51e-18,10;UBERON:0004178,2.51e-18,10;UBERON:0001135,2.63e-12,15;UBERON:0002097,2.47e-09,41;UBERON:0000947,7.58e-09,21;UBERON:0010191,7.58e-09,21;UBERON:0010188,2.34e-08,6;UBERON:0002539,2.34e-08,6;UBERON:0008816,2.34e-08,6;UBERON:0002199,2.82e-08,46;UBERON:0002416,2.82e-08,46;UBERON:0003102,6.89e-08,99;UBERON:0000078,6.42e-07,2;UBERON:0007497,6.42e-07,2;UBERON:0003643,6.42e-07,2;UBERON:0003504,6.42e-07,2;UBERON:0003469,6.42e-07,2;UBERON:0003496,6.42e-07,2;UBERON:0002012,6.42e-07,2;UBERON:0008886,6.42e-07,2;UBERON:0007303,6.42e-07,2;UBERON:0002061,6.42e-07,2;UBERON:0005432,6.42e-07,2;UBERON:0004363,6.42e-07,2 | |||
|phase1_expression=0.908391896352783,0.642301571672949,0.281908808191942,0,0,0.872338524100369,0,0,0,0,0,0,0,0,0,0.672325146451775,0,1.46062018077475,0.487932798790507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286836620748814,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.07633781413317,0.213557388818567,0,1.20036438433761,0,0.515281080091258,0.18611685633159,3.71307930930786,3.50773218580315,0.757301322732344,0,0,1.42003837006646,1.71278566986988,0.339121184620975,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329250856225877,0,0.402115889646523,0.185176890317059,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.6798212819886,0.141775097242386,0.53735113621709,0.871901815541886,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.434343920002738,0.205476322550383,1.96967059563885,0,0,0,0,0,1.30139853857622,0,0,0,0,0,0,0,0,0,2.9115920614313,1.78428988797162,1.41932173530541,0.468565659970853,0,0,0,0,0.184369168541703,0,0,0,0,0,0,0,0,0,0.496215615637554,0.306923946576125,0,0.128139149255701,0,0.321707842287215,0,0.154209693802656,0,0.0821271560138091,0,0,0,1.00253235151642,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193341436584244,0,0,0,0,0,0,0,0,0,0.510450849978337,0,0.464845549297286,3.77774816196768,2.7881490806424,0,0,4.34966496037536,0.9266210955196,0,0,0,0,0,0,0,0,0,0,0,0.202182481573316,0,0.421258456238981,0,0,0,0,0,2.26016233240486,0,0,0,0,0,0,0.30982349809975,0.281695602532241,0,0,0,0,0,0,0,0,0.0962221127255121,0.670302275535787,0,0,0.43050537267123,0,0,0.689170200620878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.994147647766298,0,0,0,0.211125408127993,0,0,0,0,0,0.311039587661807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.295547618953547,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.34823682632161,0,0,0,0,0,0,0,0,0.959293472527256,0,0.126621591911757,0,0,0,0,0,0,0,0,0,0,0,0,0.101998217636322,0.288950589901519,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.326587360109409,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.249960815924213,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.295710299979268,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343395705182793,0.336749488765919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0691572524642179,0,0,0,0,0,0,0.381382095467167,0,0,0,0.20170506870352,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620747142958579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr1:108247510..108247526,- | |||
}} |
Latest revision as of 19:10, 27 July 2015
Short description: | p@chr1:108247510..108247526, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:108247510..108247526, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
aortic smooth muscle cell | 2.51e-18 | 10 |
receptor cell | 2.97e-17 | 6 |
sensory epithelial cell | 2.97e-17 | 6 |
olfactory epithelial cell | 2.97e-17 | 6 |
skin fibroblast | 6.47e-17 | 23 |
smooth muscle cell of the pulmonary artery | 1.40e-12 | 1 |
vascular associated smooth muscle cell | 9.86e-09 | 32 |
Ontology term | p-value | n |
---|---|---|
blood vessel smooth muscle | 2.51e-18 | 10 |
arterial system smooth muscle | 2.51e-18 | 10 |
artery smooth muscle tissue | 2.51e-18 | 10 |
aorta smooth muscle tissue | 2.51e-18 | 10 |
smooth muscle tissue | 2.63e-12 | 15 |
skin of body | 2.47e-09 | 41 |
aorta | 7.58e-09 | 21 |
aortic system | 7.58e-09 | 21 |
protuberance | 2.34e-08 | 6 |
pharyngeal arch | 2.34e-08 | 6 |
embryonic head | 2.34e-08 | 6 |
integument | 2.82e-08 | 46 |
integumental system | 2.82e-08 | 46 |
surface structure | 6.89e-08 | 99 |
mixed ectoderm/mesoderm/endoderm-derived structure | 6.42e-07 | 2 |
developing epithelial placode | 6.42e-07 | 2 |
respiratory system arterial blood vessel | 6.42e-07 | 2 |
respiratory system blood vessel | 6.42e-07 | 2 |
respiratory system artery | 6.42e-07 | 2 |
head blood vessel | 6.42e-07 | 2 |
pulmonary artery | 6.42e-07 | 2 |
pulmonary vascular system | 6.42e-07 | 2 |
pharyngeal vasculature | 6.42e-07 | 2 |
truncus arteriosus | 6.42e-07 | 2 |
aortic sac | 6.42e-07 | 2 |
pharyngeal arch artery | 6.42e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 1.44e-09 | 5 |
myotonic disease | 1.44e-09 | 5 |
muscle tissue disease | 1.44e-09 | 5 |
myopathy | 1.44e-09 | 5 |
muscular disease | 1.44e-09 | 5 |
myotonic dystrophy | 1.44e-09 | 5 |