FFCP PHASE1:Hg19::chr1:166964233..166964235,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:166964233..166964235,+ | |||
|coexpression_cluster_id=C330 | |||
|description=CAGE_peak_at_chr1:166964233..166964235,+ | |description=CAGE_peak_at_chr1:166964233..166964235,+ | ||
|id=chr1:166964233..166964235,+ | |id=chr1:166964233..166964235,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000322;2.62e-23;3!CL:0002202;1.04e-08;9!CL:0002632;1.04e-08;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000322,2.62e-23,3;CL:0002202,1.04e-08,9;CL:0002632,1.04e-08,9 | |||
|ontology_enrichment_development_v019=UBERON:0009117;6.34e-08;10!UBERON:0005564;6.34e-08;10 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3910;3.61e-34;2!DOID:3908;1.40e-14;5!DOID:1325;8.16e-11;7!DOID:3904;8.16e-11;7!DOID:1036;1.41e-09;8!DOID:3905;1.04e-08;9 | |||
|ontology_enrichment_disease_v019_2=DOID:3910,3.61e-34,2;DOID:3908,1.40e-14,5;DOID:1325,8.16e-11,7;DOID:3904,8.16e-11,7;DOID:1036,1.47e-09,8;DOID:3905,1.04e-08,9 | |||
|ontology_enrichment_uberon=UBERON:0001049!4.50e-10!57;UBERON:0005068!4.50e-10!57;UBERON:0006241!4.50e-10!57;UBERON:0007135!4.50e-10!57;UBERON:0002616!1.14e-09!59;UBERON:0000955!1.92e-09!69;UBERON:0006238!1.92e-09!69;UBERON:0002780!8.32e-08!41;UBERON:0001890!8.32e-08!41;UBERON:0006240!8.32e-08!41;UBERON:0001017!1.22e-07!82;UBERON:0003080!1.34e-07!42;UBERON:0000473!1.97e-07!8;UBERON:0003112!3.02e-07!1;UBERON:0000032!3.02e-07!1;UBERON:0005253!3.02e-07!1;UBERON:0003128!3.02e-07!1;UBERON:0002241!3.02e-07!1;UBERON:0001703!3.02e-07!1;UBERON:0004761!3.02e-07!1;UBERON:0009617!3.02e-07!1;UBERON:0005743!3.40e-07!86;UBERON:0007190!3.85e-07!1;UBERON:0007023!4.40e-07!115;UBERON:0001882!6.57e-07!1;UBERON:0005403!6.57e-07!1 | |||
|ontology_enrichment_uberon_v019=UBERON:0004903;3.61e-34;2!UBERON:0002173;3.61e-34;2!UBERON:0002186;3.61e-34;2!UBERON:0004821;2.62e-23;3!UBERON:0007499;2.62e-23;3!UBERON:0003215;2.62e-23;3!UBERON:0010368;2.62e-23;3!UBERON:0009911;2.62e-23;3!UBERON:0002299;2.62e-23;3!UBERON:0006524;2.62e-23;3!UBERON:0008874;2.62e-23;3!UBERON:0002169;2.62e-23;3!UBERON:0004894;2.62e-23;3!UBERON:0009856;7.35e-18;4!UBERON:0000473;1.41e-09;8!UBERON:0000058;5.73e-08;10!UBERON:0003135;2.55e-07;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004903,3.61e-34,2;UBERON:0002173,3.61e-34,2;UBERON:0002186,3.61e-34,2;UBERON:0004821,2.62e-23,3;UBERON:0003215,2.62e-23,3;UBERON:0010368,2.62e-23,3;UBERON:0009911,2.62e-23,3;UBERON:0002299,2.62e-23,3;UBERON:0006524,2.62e-23,3;UBERON:0008874,2.62e-23,3;UBERON:0002169,2.62e-23,3;UBERON:0004894,2.62e-23,3;UBERON:0000473,1.35e-09,8;UBERON:0003135,2.47e-07,11 | |||
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|short_description=p@chr1:166964233..166964235,+ | |short_description=p@chr1:166964233..166964235,+ | ||
}} | }} |
Latest revision as of 23:59, 27 July 2015
Short description: | p@chr1:166964233..166964235, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:166964233..166964235, + |
Coexpression cluster: | C330_bronchioalveolar_oral_signet_embryonic_lymphangiectasia_testis_adult |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pneumocyte | 2.62e-23 | 3 |
epithelial cell of tracheobronchial tree | 1.04e-08 | 9 |
epithelial cell of lower respiratory tract | 1.04e-08 | 9 |
Ontology term | p-value | n |
---|---|---|
bronchoalveolar duct junction | 3.61e-34 | 2 |
alveolar duct | 3.61e-34 | 2 |
bronchiole | 3.61e-34 | 2 |
pulmonary alveolus epithelium | 2.62e-23 | 3 |
alveolus | 2.62e-23 | 3 |
pulmonary lobule | 2.62e-23 | 3 |
lobule | 2.62e-23 | 3 |
alveolus of lung | 2.62e-23 | 3 |
alveolar system | 2.62e-23 | 3 |
pulmonary acinus | 2.62e-23 | 3 |
alveolar sac | 2.62e-23 | 3 |
alveolar wall | 2.62e-23 | 3 |
testis | 1.35e-09 | 8 |
male reproductive organ | 2.47e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
lung adenocarcinoma | 3.61e-34 | 2 |
non-small cell lung carcinoma | 1.40e-14 | 5 |
bronchus cancer | 8.16e-11 | 7 |
bronchogenic carcinoma | 8.16e-11 | 7 |
chronic leukemia | 1.47e-09 | 8 |
lung carcinoma | 1.04e-08 | 9 |