FFCP PHASE1:Hg19::chr1:209602609..209602628,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-20bp_to_ENST00000458250_5end | |association_with_transcript=-20bp_to_ENST00000458250_5end | ||
|cluster_id=chr1:209602609..209602628,+ | |||
|coexpression_cluster_id=C2561 | |coexpression_cluster_id=C2561 | ||
|description=CAGE_peak_3_at_ENST00000458250_5end | |description=CAGE_peak_3_at_ENST00000458250_5end | ||
|id=chr1:209602609..209602628,+ | |id=chr1:209602609..209602628,+ | ||
|ontology_enrichment_celltype=CL:0002076!3.18e-28!43;CL:0000066!2.97e-22!254;CL:0000223!1.58e-20!59;CL:0002368!3.10e-16!13;CL:0002251!4.12e-16!21;CL:0002159!1.75e-15!13;CL:0000244!9.85e-12!4;CL:0000731!9.85e-12!4;CL:0002077!7.89e-11!33;CL:0000076!1.21e-10!62;CL:0000622!1.91e-09!5;CL:0002328!6.25e-09!3;CL:0002621!1.21e-08!3;CL:0000362!1.83e-08!8;CL:0000220!2.69e-08!246;CL:0002321!3.76e-08!248;CL:0000154!7.44e-08!6;CL:0000240!1.17e-07!6;CL:0000311!1.17e-07!6;CL:0000079!1.17e-07!6;CL:0000237!1.17e-07!6;CL:0000036!1.17e-07!6;CL:0000357!1.17e-07!6;CL:0000114!1.17e-07!6;CL:0002202!2.17e-07!9;CL:0002632!2.17e-07!9;CL:0000575!8.35e-07!2 | |ontology_enrichment_celltype=CL:0002076!3.18e-28!43;CL:0000066!2.97e-22!254;CL:0000223!1.58e-20!59;CL:0002368!3.10e-16!13;CL:0002251!4.12e-16!21;CL:0002159!1.75e-15!13;CL:0000244!9.85e-12!4;CL:0000731!9.85e-12!4;CL:0002077!7.89e-11!33;CL:0000076!1.21e-10!62;CL:0000622!1.91e-09!5;CL:0002328!6.25e-09!3;CL:0002621!1.21e-08!3;CL:0000362!1.83e-08!8;CL:0000220!2.69e-08!246;CL:0002321!3.76e-08!248;CL:0000154!7.44e-08!6;CL:0000240!1.17e-07!6;CL:0000311!1.17e-07!6;CL:0000079!1.17e-07!6;CL:0000237!1.17e-07!6;CL:0000036!1.17e-07!6;CL:0000357!1.17e-07!6;CL:0000114!1.17e-07!6;CL:0002202!2.17e-07!9;CL:0002632!2.17e-07!9;CL:0000575!8.35e-07!2 | ||
|ontology_enrichment_celltype_v019=CL:0002076;6.41e-27;42!CL:0002368;1.17e-22;13!CL:0000240;4.71e-16;6!CL:0000311;4.71e-16;6!CL:0000079;4.71e-16;6!CL:0000237;4.71e-16;6!CL:0002159;5.14e-15;14!CL:0000244;2.34e-14;4!CL:0000731;2.34e-14;4!CL:0002251;3.99e-14;20!CL:0000575;2.64e-13;2!CL:0000622;4.98e-12;5!CL:0000312;3.80e-11;5!CL:0000362;7.78e-11;9!CL:0000154;4.20e-10;6!CL:0002623;1.85e-09;3!CL:0002231;2.06e-09;3!CL:0002077;3.17e-09;34!CL:0002328;3.82e-09;3!CL:0002336;1.72e-07;1!CL:0002261;1.72e-07;1!CL:0002170;1.72e-07;1!CL:0000150;7.10e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,3.26e-34,42;CL:0000223,7.39e-24,58;CL:0002368,1.03e-22,13;CL:0000240,5.53e-16,6;CL:0000311,5.53e-16,6;CL:0000079,5.53e-16,6;CL:0000237,5.53e-16,6;CL:0000036,5.53e-16,6;CL:0000357,5.53e-16,6;CL:0000114,5.53e-16,6;CL:0002159,5.35e-15,14;CL:0000244,1.74e-14,4;CL:0000731,1.74e-14,4;CL:0002251,4.43e-14,20;CL:0000066,1.03e-13,253;CL:0000575,2.64e-13,2;CL:0000622,5.17e-12,5;CL:0000312,4.23e-11,5;CL:0000362,8.10e-11,9;CL:0002077,2.62e-10,34;CL:0000154,4.34e-10,6;CL:0000076,1.46e-09,63;CL:0002623,2.06e-09,3;CL:0002231,2.33e-09,3;CL:0002328,2.99e-09,3;CL:0002321,3.54e-09,250;CL:0002336,1.83e-07,1;CL:0002261,1.83e-07,1;CL:0002170,1.83e-07,1;CL:0000150,7.24e-07,9 | |||
|ontology_enrichment_development_v019=CL:0000357;4.71e-16;6!CL:0000114;4.71e-16;6!CL:0000223;5.80e-13;58!UBERON:0009143;3.40e-07;1!UBERON:0005754;3.40e-07;1 | |||
|ontology_enrichment_disease=DOID:1749!7.74e-17!14 | |ontology_enrichment_disease=DOID:1749!7.74e-17!14 | ||
|ontology_enrichment_disease_v019=DOID:3151;1.72e-07;1!DOID:3149;1.72e-07;1!DOID:1749;4.40e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:3151,1.95e-07,1;DOID:3149,1.95e-07,1;DOID:1749,4.15e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0001004!4.49e-15!72;UBERON:0000365!1.34e-13!5;UBERON:0000161!1.37e-13!35;UBERON:0004119!1.82e-13!169;UBERON:0000925!1.82e-13!169;UBERON:0006595!1.82e-13!169;UBERON:0000166!2.34e-13!21;UBERON:0000165!2.36e-11!28;UBERON:0000930!2.36e-11!28;UBERON:0005910!2.91e-11!6;UBERON:0003102!4.49e-10!95;UBERON:0003729!2.04e-09!5;UBERON:0004815!6.25e-09!3;UBERON:0002031!6.25e-09!3;UBERON:0000065!6.69e-09!53;UBERON:0001949!1.21e-08!3;UBERON:0006947!1.57e-08!3;UBERON:0004054!1.57e-08!3;UBERON:0001007!6.56e-08!155;UBERON:0001555!6.56e-08!155;UBERON:0007026!6.56e-08!155;UBERON:0001444!7.32e-08!48;UBERON:0003101!7.60e-08!22;UBERON:0000079!7.60e-08!22;UBERON:0003135!1.26e-07!11;UBERON:0006562!1.56e-07!11;UBERON:0000344!1.83e-07!12;UBERON:0003343!5.32e-07!4;UBERON:0004785!5.32e-07!4;UBERON:0002185!8.91e-07!4 | |ontology_enrichment_uberon=UBERON:0001004!4.49e-15!72;UBERON:0000365!1.34e-13!5;UBERON:0000161!1.37e-13!35;UBERON:0004119!1.82e-13!169;UBERON:0000925!1.82e-13!169;UBERON:0006595!1.82e-13!169;UBERON:0000166!2.34e-13!21;UBERON:0000165!2.36e-11!28;UBERON:0000930!2.36e-11!28;UBERON:0005910!2.91e-11!6;UBERON:0003102!4.49e-10!95;UBERON:0003729!2.04e-09!5;UBERON:0004815!6.25e-09!3;UBERON:0002031!6.25e-09!3;UBERON:0000065!6.69e-09!53;UBERON:0001949!1.21e-08!3;UBERON:0006947!1.57e-08!3;UBERON:0004054!1.57e-08!3;UBERON:0001007!6.56e-08!155;UBERON:0001555!6.56e-08!155;UBERON:0007026!6.56e-08!155;UBERON:0001444!7.32e-08!48;UBERON:0003101!7.60e-08!22;UBERON:0000079!7.60e-08!22;UBERON:0003135!1.26e-07!11;UBERON:0006562!1.56e-07!11;UBERON:0000344!1.83e-07!12;UBERON:0003343!5.32e-07!4;UBERON:0004785!5.32e-07!4;UBERON:0002185!8.91e-07!4 | ||
|ontology_enrichment_uberon_v019=UBERON:0003343;3.86e-14;4!UBERON:0004785;3.86e-14;4!UBERON:0000365;1.37e-11;5!UBERON:0003729;2.09e-11;13!UBERON:0000161;4.67e-11;19!UBERON:0000166;4.67e-11;19!UBERON:0000165;7.63e-10;28!UBERON:0005910;9.68e-10;6!UBERON:0000974;1.34e-09;6!UBERON:0004815;3.82e-09;3!UBERON:0002031;3.82e-09;3!UBERON:0000486;3.00e-08;12!UBERON:0000344;2.45e-07;20!UBERON:0000998;3.40e-07;1!UBERON:0006868;3.40e-07;1!UBERON:0000964;4.49e-07;4!UBERON:0010409;4.49e-07;4!UBERON:0001004;4.97e-07;65 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003343,3.45e-14,4;UBERON:0004785,3.45e-14,4;UBERON:0003102,2.23e-12,99;UBERON:0000365,1.08e-11,5;UBERON:0001004,1.83e-11,74;UBERON:0003729,2.21e-11,13;UBERON:0004119,4.36e-11,160;UBERON:0000925,4.36e-11,160;UBERON:0006595,4.36e-11,160;UBERON:0005910,7.96e-10,6;UBERON:0000161,9.78e-10,36;UBERON:0000166,1.90e-09,22;UBERON:0000165,1.91e-09,29;UBERON:0000930,1.91e-09,29;UBERON:0004815,2.99e-09,3;UBERON:0002031,2.99e-09,3;UBERON:0001444,1.30e-08,49;UBERON:0000033,2.34e-07,56;UBERON:0000998,2.50e-07,1;UBERON:0006868,2.50e-07,1;UBERON:0000344,2.54e-07,20;UBERON:0000964,4.49e-07,4;UBERON:0010409,4.49e-07,4;UBERON:0004348,4.49e-07,4;UBERON:0005427,4.49e-07,4 | |||
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| ||
|short_description=p3@ENST00000458250 | |short_description=p3@ENST00000458250 | ||
}} | }} |
Latest revision as of 03:18, 28 July 2015
Short description: | p3@ENST00000458250 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_ENST00000458250_5end |
Coexpression cluster: | C2561_Prostate_Small_salivary_oral_Bronchial_nasal_squamous |
Association with transcript: | -20bp_to_ENST00000458250_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mucosa of oral region | 3.45e-14 | 4 |
respiratory system mucosa | 3.45e-14 | 4 |
surface structure | 2.23e-12 | 99 |
urothelium | 1.08e-11 | 5 |
respiratory system | 1.83e-11 | 74 |
mouth mucosa | 2.21e-11 | 13 |
endoderm-derived structure | 4.36e-11 | 160 |
endoderm | 4.36e-11 | 160 |
presumptive endoderm | 4.36e-11 | 160 |
transitional epithelium | 7.96e-10 | 6 |
orifice | 9.78e-10 | 36 |
oral opening | 1.90e-09 | 22 |
mouth | 1.91e-09 | 29 |
stomodeum | 1.91e-09 | 29 |
lower respiratory tract epithelium | 2.99e-09 | 3 |
epithelium of bronchus | 2.99e-09 | 3 |
subdivision of head | 1.30e-08 | 49 |
head | 2.34e-07 | 56 |
seminal vesicle | 2.50e-07 | 1 |
seminal fluid secreting gland | 2.50e-07 | 1 |
mucosa | 2.54e-07 | 20 |
cornea | 4.49e-07 | 4 |
eye surface | 4.49e-07 | 4 |
optic eminence | 4.49e-07 | 4 |
corneal primordium | 4.49e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
skin squamous cell carcinoma | 1.95e-07 | 1 |
keratoacanthoma | 1.95e-07 | 1 |
squamous cell carcinoma | 4.15e-07 | 14 |