FFCP PHASE1:Hg19::chr1:26607704..26607714,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:26607704..26607714,+ to FFCP PHASE1:Hg19::chr1:26607704..26607714,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr1:26607704..26607714,+ | |||
|coexpression_cluster_id=C853 | |||
|description=CAGE_peak_at_chr1:26607704..26607714,+ | |||
|id=chr1:26607704..26607714,+ | |||
|ontology_enrichment_celltype=CL:0000048!4.79e-16!430;CL:0000723!7.37e-16!436;CL:0000034!8.46e-16!444;CL:0002371!4.46e-15!591;CL:0000144!7.29e-14!625;CL:0002057!1.96e-13!42;CL:0000860!5.43e-12!45;CL:0000839!5.05e-11!70;CL:0000766!5.06e-11!76;CL:0002320!2.94e-10!365;CL:0000557!7.46e-10!71;CL:0002194!8.15e-10!63;CL:0000576!8.15e-10!63;CL:0000040!8.15e-10!63;CL:0000559!8.15e-10!63;CL:0000134!1.57e-09!358;CL:0002009!2.22e-09!65;CL:0000003!4.26e-09!722;CL:0000012!2.09e-08!682;CL:0000548!4.67e-08!679;CL:0000004!4.67e-08!679;CL:0000255!4.67e-08!679;CL:0000183!1.79e-07!59;CL:0000219!4.20e-07!390;CL:0000680!4.49e-07!57;CL:0000056!4.49e-07!57;CL:0000355!4.49e-07!57;CL:0000055!7.67e-07!180 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.29e-17;33!CL:0002057;1.29e-17;33!CL:0000473;9.54e-15;39!CL:0000234;9.54e-15;39!CL:0000576;9.46e-11;48!CL:0000766;5.53e-09;69!CL:0000359;5.83e-07;32 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,4.52e-21,72;CL:0000473,1.30e-20,48;CL:0000234,1.30e-20,48;CL:0000860,2.03e-20,42;CL:0002057,2.03e-20,42;CL:0000839,8.13e-19,66;CL:0000557,2.52e-18,67;CL:0002194,1.75e-17,59;CL:0000576,1.75e-17,59;CL:0000040,1.75e-17,59;CL:0000559,1.75e-17,59;CL:0002009,1.70e-16,61;CL:0000048,1.82e-13,427;CL:0000723,9.17e-13,433;CL:0000034,2.70e-12,441;CL:0000763,2.63e-10,108;CL:0000049,2.63e-10,108;CL:0002320,8.23e-09,361;CL:0000134,1.03e-08,354;CL:0000359,5.18e-07,32;CL:0000738,5.61e-07,136 | |||
|ontology_enrichment_development_v019=CL:0002057;2.49e-15;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002204!1.56e-13!167;UBERON:0003081!9.32e-13!216;UBERON:0002384!1.06e-10!375;UBERON:0002371!3.37e-10!80;UBERON:0002193!1.55e-09!112;UBERON:0002390!6.74e-09!102;UBERON:0003061!6.74e-09!102;UBERON:0001474!2.01e-08!86;UBERON:0004765!5.03e-08!101;UBERON:0001434!5.03e-08!101;UBERON:0002405!2.58e-07!115;UBERON:0004290!4.62e-07!70;UBERON:0001637!4.88e-07!42;UBERON:0003509!4.88e-07!42;UBERON:0004572!4.88e-07!42;UBERON:0004872!7.84e-07!84 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003081,2.70e-21,203;UBERON:0002204,2.14e-20,167;UBERON:0000926,7.16e-20,315;UBERON:0004120,7.16e-20,315;UBERON:0006603,7.16e-20,315;UBERON:0002371,5.08e-19,76;UBERON:0001474,1.95e-17,82;UBERON:0001434,2.62e-16,100;UBERON:0004765,3.47e-16,90;UBERON:0002390,3.86e-16,98;UBERON:0003061,3.86e-16,98;UBERON:0002193,2.71e-15,108;UBERON:0002405,4.31e-15,93;UBERON:0002384,1.11e-08,371;UBERON:0001637,4.13e-07,42;UBERON:0003509,4.13e-07,42;UBERON:0004572,4.13e-07,42 | |||
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| ||
|short_description=p@chr1:26607704..26607714,+ | |||
}} | }} |
Latest revision as of 06:35, 28 July 2015
Short description: | p@chr1:26607704..26607714, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:26607704..26607714, + |
Coexpression cluster: | C853_Neutrophils_leiomyoma_Smooth_Monocytederived_CD14_Osteoblast_Prostate |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 4.52e-21 | 72 |
defensive cell | 1.30e-20 | 48 |
phagocyte | 1.30e-20 | 48 |
classical monocyte | 2.03e-20 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.03e-20 | 42 |
myeloid lineage restricted progenitor cell | 8.13e-19 | 66 |
granulocyte monocyte progenitor cell | 2.52e-18 | 67 |
monopoietic cell | 1.75e-17 | 59 |
monocyte | 1.75e-17 | 59 |
monoblast | 1.75e-17 | 59 |
promonocyte | 1.75e-17 | 59 |
macrophage dendritic cell progenitor | 1.70e-16 | 61 |
multi fate stem cell | 1.82e-13 | 427 |
somatic stem cell | 9.17e-13 | 433 |
stem cell | 2.70e-12 | 441 |
myeloid cell | 2.63e-10 | 108 |
common myeloid progenitor | 2.63e-10 | 108 |
connective tissue cell | 8.23e-09 | 361 |
mesenchymal cell | 1.03e-08 | 354 |
vascular associated smooth muscle cell | 5.18e-07 | 32 |
leukocyte | 5.61e-07 | 136 |
Ontology term | p-value | n |
---|---|---|
lateral plate mesoderm | 2.70e-21 | 203 |
musculoskeletal system | 2.14e-20 | 167 |
mesoderm | 7.16e-20 | 315 |
mesoderm-derived structure | 7.16e-20 | 315 |
presumptive mesoderm | 7.16e-20 | 315 |
bone marrow | 5.08e-19 | 76 |
bone element | 1.95e-17 | 82 |
skeletal system | 2.62e-16 | 100 |
skeletal element | 3.47e-16 | 90 |
hematopoietic system | 3.86e-16 | 98 |
blood island | 3.86e-16 | 98 |
hemolymphoid system | 2.71e-15 | 108 |
immune system | 4.31e-15 | 93 |
connective tissue | 1.11e-08 | 371 |
artery | 4.13e-07 | 42 |
arterial blood vessel | 4.13e-07 | 42 |
arterial system | 4.13e-07 | 42 |