FFCP PHASE1:Hg19::chr1:31899496..31899521,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:31899496..31899521,+ | |||
|coexpression_cluster_id=C1475 | |||
|description=CAGE_peak_at_chr1:31899496..31899521,+ | |description=CAGE_peak_at_chr1:31899496..31899521,+ | ||
|id=chr1:31899496..31899521,+ | |id=chr1:31899496..31899521,+ | ||
|ontology_enrichment_celltype=CL:0002076!2.82e-14!43;CL:0000223!2.72e-11!59;CL:0002368!4.02e-11!13;CL:0000066!9.44e-11!254;CL:0002159!9.33e-10!13;CL:0000220!2.38e-09!246;CL:0002321!5.08e-09!248;CL:0002202!6.77e-08!9;CL:0002632!6.77e-08!9;CL:0000362!4.69e-07!8;CL:0002077!4.77e-07!33 | |ontology_enrichment_celltype=CL:0002076!2.82e-14!43;CL:0000223!2.72e-11!59;CL:0002368!4.02e-11!13;CL:0000066!9.44e-11!254;CL:0002159!9.33e-10!13;CL:0000220!2.38e-09!246;CL:0002321!5.08e-09!248;CL:0002202!6.77e-08!9;CL:0002632!6.77e-08!9;CL:0000362!4.69e-07!8;CL:0002077!4.77e-07!33 | ||
|ontology_enrichment_celltype_v019=CL:0002368;1.14e-23;13!CL:0002076;1.38e-14;42!CL:0002202;3.50e-14;9!CL:0002632;3.50e-14;9!CL:0000362;2.21e-13;9!CL:0002159;1.49e-10;14!CL:0002328;3.55e-09;3!CL:0000307;4.52e-09;3!CL:0002621;4.64e-09;3!CL:0000244;5.35e-07;4!CL:0000731;5.35e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002368,1.12e-23,13;CL:0002076,1.37e-18,42;CL:0000223,5.17e-15,58;CL:0002202,3.05e-14,9;CL:0002632,3.05e-14,9;CL:0000362,1.30e-13,9;CL:0002159,7.95e-11,14;CL:0000066,1.75e-09,253;CL:0002328,2.73e-09,3;CL:0002621,3.48e-09,3;CL:0000068,3.67e-09,3;CL:0000069,3.67e-09,3;CL:0000307,3.67e-09,3;CL:0000377,3.67e-09,3;CL:0000244,4.68e-07,4;CL:0000731,4.68e-07,4 | |||
|ontology_enrichment_development_v019=CL:0000377;4.52e-09;3!CL:0000223;5.29e-09;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004119!2.83e-16!169;UBERON:0000925!2.83e-16!169;UBERON:0006595!2.83e-16!169;UBERON:0003102!4.67e-13!95;UBERON:0001007!5.08e-12!155;UBERON:0001555!5.08e-12!155;UBERON:0007026!5.08e-12!155;UBERON:0000161!9.80e-11!35;UBERON:0002100!3.08e-10!216;UBERON:0000165!4.85e-10!28;UBERON:0000930!4.85e-10!28;UBERON:0003104!2.52e-09!238;UBERON:0009142!2.52e-09!238;UBERON:0001004!1.94e-08!72;UBERON:0000077!2.59e-08!130;UBERON:0006554!4.40e-08!44;UBERON:0000475!7.51e-08!365;UBERON:0004921!7.82e-08!129;UBERON:0004185!7.82e-08!129;UBERON:0000467!9.74e-08!625;UBERON:0005153!1.05e-07!37;UBERON:0001008!1.12e-07!45;UBERON:0000480!1.27e-07!626;UBERON:0000166!2.87e-07!21 | |||
|ontology_enrichment_uberon_v019=UBERON:0000486;2.31e-10;12!UBERON:0001003;6.30e-10;15!UBERON:0007376;6.30e-10;15!UBERON:0004815;3.55e-09;3!UBERON:0002031;3.55e-09;3!UBERON:0001949;4.64e-09;3!UBERON:0000365;5.25e-09;5!UBERON:0007196;4.92e-08;15!UBERON:0001558;4.92e-08;15!UBERON:0010371;8.72e-08;31!UBERON:0005910;1.71e-07;6!UBERON:0005911;2.10e-07;36!UBERON:0003729;7.99e-07;13 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,1.85e-12,160;UBERON:0000925,1.85e-12,160;UBERON:0006595,1.85e-12,160;UBERON:0001003,4.01e-10,15;UBERON:0007376,4.01e-10,15;UBERON:0007383,4.01e-10,15;UBERON:0004815,2.73e-09,3;UBERON:0002031,2.73e-09,3;UBERON:0001949,3.48e-09,3;UBERON:0000365,5.46e-09,5;UBERON:0001004,3.92e-08,74;UBERON:0007196,4.56e-08,15;UBERON:0001558,4.56e-08,15;UBERON:0003102,8.52e-08,99;UBERON:0005910,1.77e-07,6;UBERON:0001007,2.54e-07,145;UBERON:0001555,2.54e-07,145;UBERON:0007026,2.54e-07,145;UBERON:0009569,4.35e-07,112;UBERON:0005911,6.86e-07,82 | |||
|phase1_expression=0,0.856402095563933,0.422863212287913,0,1.34088328328186,0,0,0.631719873426831,0,0.491467873003018,0.697801167972428,1.09220686065086,0.527533956456907,0.37129905888014,0,0,0,0,0,0,0.612002073732759,0,0,0.136874425072884,0,0.152826811495903,0.0821005894499457,0.0787107813136792,0,0,0.154816123316076,6.43594857135249,2.409647350226,2.9580320813343,0.232401601740905,0,0,0,0,0,0,0,0,0.145398238779565,0.755751887377619,0,0.232429036905685,0.822335776043652,0,0,0,0,0,0,1.35426486594342,0,0.545812300115692,0.224723484445085,0.918251677112708,0,0.639337125799041,0,0,0,0,0.56738522469114,0,0.251248665256743,0,0,0,0,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34140171940727,0,0.361439152384566,0,0.144846518960824,0,0,0,0,0,0.130979075497713,0.728590576585084,0.370784442784429,0.324547393654683,0,0.26591592103773,0.238490624305342,0,0,0,0,0,0,0.419499436209906,0,0,0,0,0,0,0,0.24406205754817,0,2.43042584364528,0,0,0,1.53316637465883,0,0,0,0,2.18047026071267,0,0,0,0,0,0.560677600142307,0,0,0,0.134710672069688,0,0.151357427644931,0,0.70296429550139,2.18512053781224,0,0.448346041655403,0.117434498643765,0,0,0.204154171254893,0.61417158655884,1.03325781175765,0,0.741800787835671,0,0,0.168336113954066,1.12606667884768,0.277064115484183,0.877955241761676,1.22595118319608,0.300476117813194,0,0.179389635688862,0.213557388818567,0.211931901159562,0,0.309157587715317,0,0,0,0.292311015483596,0,0.0920498986422993,0,0,0.201504196455281,0.169560592310488,3.09217365061275,2.72746120590835,2.86804595389004,0,0,0.116193942869518,0.207322110030741,0,0,0,0,2.76269842704961,1.85747171212792,1.44375896333917,0.591534000199219,0,0,0.220587945464788,0,0,0.404493924480493,0,0,0,0,0,0,1.26755034821831,0,1.77236972004421,0,0.122988438543114,0.171567810298526,3.29250856225877,2.24803506515239,1.70899253099772,0.833296006426766,0.325808305310325,1.03993478527958,0,0,0,0,0.462985512576611,0.190254152234598,0,0,0,0,0.148631162288728,0.93733833986777,1.84780341018745,0.992425680696705,0.626909658919938,0.290633938513962,3.83382679165211,0,0.176096868026452,0,0.144119953416961,0,0,0,0,1.71072446022705,0.102827492703324,0.300343057843917,0,0.224262168690721,0,0.07333828582095,0.129271715757778,3.57656445851882,0,0.531876233169741,2.08014873822732,0,0,0.266422179016099,0.142977993658148,0,0,0,0,0,0,0,0.199945982364114,0,0,0,0,0,0,0.144781306667579,0.205476322550383,0.179060963239896,0,0,0,0,0,0,0,0,0.637938751653163,0,0,0,0,0,0,0,0.356857977594324,0.473107245101804,0.468565659970853,0,4.5481500811197,2.0694614258501,0,0,0.347534457872331,0,0,0,0.215714200818617,0,0.606255142892519,1.66435439510497,0.30239029332968,0.248107807818777,0,1.40330047216537,0.512556597022804,0,0.321707842287215,0,0.308419387605311,0,0.164254312027618,2.59627214591811,0.697262270759755,0.483437798366489,5.81468763879526,1.65745780084613,0.34444334449382,0.728364672026868,0.786746489756545,0,0.385076685522074,0,0,0.105551628892876,0,0.170093705276516,0.215915916102139,1.54227252690289,0.541892875087706,2.00675909541941,0,0.831076008928724,0.447749509444357,0.219259876645935,0,0,0,0,1.54561517471583,0.183138929636687,0,1.14853107599234,9.1008434445113,0,0.193341436584244,0.308097234229289,0,0.551346289938122,0.322260734604821,0.580066775656914,0.0852266274161009,0.356128142586949,3.8015530533025,4.80475168412765,1.14851441245126,4.34978457678865,0.929691098594572,0.31481234683064,0,0.308033580176089,0,0,0.37064843820784,0.286249773483982,0.372158369359667,0,0,0,0,0,0,0.179872457583315,0.823611089208164,0.235624804691373,0,0,0,0.48763373908959,0.243713489631284,2.11300293513511,0.136499911407986,0.424216295861138,0,0,0,2.19225442626881,0,0,0.405820753925408,0,0,0,0,0.35667105148125,0,0,0,0,0.349934720244983,1.53955380360819,4.69211592875051,8.71127878890581,0.376575203107117,3.87454835404107,3.36942951335251,2.66058092122005,0.459446800413919,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0,0,0,1.13654458722565,0.47748896947538,0.296964680832639,0,0,0,0,0,0,0,0.828851746593443,0,0,0.369254416383208,0,0.0898683511473268,0,0,0.295930216910801,0,0,0,0,0,0,1.13697999995054,0.724999575434793,0.341380344856499,0.508507300585533,0,2.75794698593172,0.291604613383254,0,0,0,0,0,0,0,0.10893846351899,0,0.538651809526579,0,0,0,0,0.31900115973192,1.09917112082235,1.5991043280559,0,0,0,0,0,0,0,0,0,0,0,0,0,1.14994833854341,1.22206028986725,0,0,0,0,0,0,0,0.391329237864179,0,0,1.20990716048664,0,0,0.300646838828985,0,0,0,0,0,0.284609546029793,0,0.173559738335131,0.0979923974143777,0.522355239482415,0.17472666824203,0,0.0967563312890851,0.0730893170861856,0.0821154570532092,0.678923115418936,0,0,0.411125773940253,0.596143835108969,0,0,0,2.34798294213288,0.19980960958213,0.144090417154106,0,0.514784993585894,0,0,1.88555227693436,0.271808412147228,0.104602846312333,0,0,0,0,0,0,0,0,0.229160424011684,0,0.199679000498991,0,0.223171457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| ||
|short_description=p@chr1:31899496..31899521,+ | |short_description=p@chr1:31899496..31899521,+ | ||
}} | }} |
Latest revision as of 07:11, 28 July 2015
Short description: | p@chr1:31899496..31899521, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:31899496..31899521, + |
Coexpression cluster: | C1475_Sebocyte_Prostate_Tracheal_Bronchial_Preadipocyte_Urothelial_Small |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
respiratory epithelial cell | 1.12e-23 | 13 |
endo-epithelial cell | 1.37e-18 | 42 |
endodermal cell | 5.17e-15 | 58 |
epithelial cell of tracheobronchial tree | 3.05e-14 | 9 |
epithelial cell of lower respiratory tract | 3.05e-14 | 9 |
epidermal cell | 1.30e-13 | 9 |
general ecto-epithelial cell | 7.95e-11 | 14 |
epithelial cell | 1.75e-09 | 253 |
bronchial epithelial cell | 2.73e-09 | 3 |
gingival epithelial cell | 3.48e-09 | 3 |
duct epithelial cell | 3.67e-09 | 3 |
branched duct epithelial cell | 3.67e-09 | 3 |
tracheal epithelial cell | 3.67e-09 | 3 |
tracheoblast | 3.67e-09 | 3 |
transitional epithelial cell | 4.68e-07 | 4 |
urothelial cell | 4.68e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 1.85e-12 | 160 |
endoderm | 1.85e-12 | 160 |
presumptive endoderm | 1.85e-12 | 160 |
skin epidermis | 4.01e-10 | 15 |
outer epithelium | 4.01e-10 | 15 |
enveloping layer of ectoderm | 4.01e-10 | 15 |
lower respiratory tract epithelium | 2.73e-09 | 3 |
epithelium of bronchus | 2.73e-09 | 3 |
gingival epithelium | 3.48e-09 | 3 |
urothelium | 5.46e-09 | 5 |
respiratory system | 3.92e-08 | 74 |
tracheobronchial tree | 4.56e-08 | 15 |
lower respiratory tract | 4.56e-08 | 15 |
surface structure | 8.52e-08 | 99 |
transitional epithelium | 1.77e-07 | 6 |
digestive system | 2.54e-07 | 145 |
digestive tract | 2.54e-07 | 145 |
primitive gut | 2.54e-07 | 145 |
subdivision of trunk | 4.35e-07 | 112 |
endo-epithelium | 6.86e-07 | 82 |