FFCP PHASE1:Hg19::chr1:32396620..32396637,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:32396620..32396637,- | |||
|coexpression_cluster_id=C28 | |||
|description=CAGE_peak_at_chr1:32396620..32396637,- | |description=CAGE_peak_at_chr1:32396620..32396637,- | ||
|id=chr1:32396620..32396637,- | |id=chr1:32396620..32396637,- | ||
|ontology_enrichment_celltype=CL:0000838!1.89e-19!52;CL:0000542!5.75e-19!53;CL:0000051!5.75e-19!53;CL:0000084!1.42e-15!25;CL:0000827!1.42e-15!25;CL:0000625!3.75e-11!11;CL:0002087!6.08e-11!119;CL:0000791!1.54e-10!18;CL:0000789!1.54e-10!18;CL:0002420!1.54e-10!18;CL:0002419!1.54e-10!18;CL:0000790!1.54e-10!18;CL:0000738!4.05e-09!140;CL:0000842!2.71e-08!3;CL:0000037!3.57e-08!172;CL:0000566!3.57e-08!172;CL:0002031!1.11e-07!124;CL:0000945!1.83e-07!24;CL:0000826!1.83e-07!24;CL:0000988!2.63e-07!182 | |ontology_enrichment_celltype=CL:0000838!1.89e-19!52;CL:0000542!5.75e-19!53;CL:0000051!5.75e-19!53;CL:0000084!1.42e-15!25;CL:0000827!1.42e-15!25;CL:0000625!3.75e-11!11;CL:0002087!6.08e-11!119;CL:0000791!1.54e-10!18;CL:0000789!1.54e-10!18;CL:0002420!1.54e-10!18;CL:0002419!1.54e-10!18;CL:0000790!1.54e-10!18;CL:0000738!4.05e-09!140;CL:0000842!2.71e-08!3;CL:0000037!3.57e-08!172;CL:0000566!3.57e-08!172;CL:0002031!1.11e-07!124;CL:0000945!1.83e-07!24;CL:0000826!1.83e-07!24;CL:0000988!2.63e-07!182 | ||
|ontology_enrichment_celltype_v019=CL:0002127;4.28e-19;1!CL:0000911;4.28e-19;1!CL:0000814;4.28e-19;1!CL:0000084;3.92e-07;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0002127,3.91e-19,1;CL:0000914,3.91e-19,1;CL:0000911,3.91e-19,1;CL:0000814,3.91e-19,1;CL:0002042,3.91e-19,1;CL:0002039,3.91e-19,1;CL:0002040,3.91e-19,1;CL:0002041,3.91e-19,1;CL:0000893,2.99e-10,2;CL:0002489,2.99e-10,2;CL:0000809,2.99e-10,2;CL:0000808,2.99e-10,2;CL:0000894,2.99e-10,2;CL:0000806,2.99e-10,2;CL:0000807,2.99e-10,2;CL:0000805,2.99e-10,2;CL:0002425,2.99e-10,2;CL:0000084,3.88e-07,25;CL:0000827,3.88e-07,25 | |||
|ontology_enrichment_development_v019=UBERON:0008425;2.47e-19;1!UBERON:0004872;3.06e-11;7!UBERON:0006965;2.07e-10;2!CL:0002425;3.13e-10;2 | |||
|ontology_enrichment_disease=DOID:0060058!1.82e-12!10;DOID:2531!2.41e-07!51;DOID:0060083!2.41e-07!51 | |||
|ontology_enrichment_disease_v019=DOID:0060058;1.04e-16;10!DOID:2531;2.33e-10;51!DOID:0060083;2.33e-10;51 | |||
|ontology_enrichment_disease_v019_2=DOID:0060058,1.18e-16,10;DOID:2531,1.52e-12,51;DOID:0060083,1.52e-12,51 | |||
|ontology_enrichment_uberon=UBERON:0004177!1.30e-14!7;UBERON:0002106!4.41e-09!3;UBERON:0004854!4.41e-09!3;UBERON:0009034!4.41e-09!3;UBERON:0002095!4.41e-09!3;UBERON:0004782!4.41e-09!3;UBERON:0003281!4.41e-09!3;UBERON:0009664!4.41e-09!3;UBERON:0002296!4.41e-09!3;UBERON:0005602!4.41e-09!3;UBERON:0001179!4.41e-09!3;UBERON:0006293!4.41e-09!3;UBERON:0002370!1.96e-07!4;UBERON:0005058!1.96e-07!4;UBERON:0009113!1.96e-07!4;UBERON:0003295!1.96e-07!4;UBERON:0005562!1.96e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;1.30e-37;2!UBERON:0005058;1.30e-37;2!UBERON:0009113;1.30e-37;2!UBERON:0004177;2.93e-33;5!UBERON:0005057;2.93e-33;5!UBERON:0000341;3.13e-10;2!UBERON:0002106;3.06e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004177,2.04e-41,7;UBERON:0005057,2.04e-41,7;UBERON:0002370,2.20e-41,4;UBERON:0005058,2.20e-41,4;UBERON:0009113,2.20e-41,4;UBERON:0003295,2.20e-41,4;UBERON:0005562,2.20e-41,4;UBERON:0000974,2.94e-29,10;UBERON:0003351,7.10e-28,6;UBERON:0003408,4.98e-17,10;UBERON:0001042,4.98e-17,10;UBERON:0009145,4.98e-17,10;UBERON:0006562,1.52e-15,11;UBERON:0009722,1.52e-15,11;UBERON:0007690,1.52e-15,11;UBERON:0000077,2.53e-10,29;UBERON:0000341,2.72e-10,2;UBERON:0008814,9.53e-10,18;UBERON:0001557,2.89e-09,19;UBERON:0002106,3.35e-07,3;UBERON:0004854,3.35e-07,3;UBERON:0009034,3.35e-07,3;UBERON:0002095,3.35e-07,3;UBERON:0004782,3.35e-07,3;UBERON:0003281,3.35e-07,3;UBERON:0009664,3.35e-07,3;UBERON:0002296,3.35e-07,3;UBERON:0005602,3.35e-07,3;UBERON:0001179,3.35e-07,3;UBERON:0006293,3.35e-07,3 | |||
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| ||
|short_description=p@chr1:32396620..32396637,- | |short_description=p@chr1:32396620..32396637,- | ||
}} | }} |
Latest revision as of 07:15, 28 July 2015
Short description: | p@chr1:32396620..32396637, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:32396620..32396637, - |
Coexpression cluster: | C28_thymus_acute_vein_Hodgkin_chronic_throat_Dendritic |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
innate effector T cell | 3.91e-19 | 1 |
immature NK T cell | 3.91e-19 | 1 |
effector T cell | 3.91e-19 | 1 |
mature NK T cell | 3.91e-19 | 1 |
immature NK T cell stage IV | 3.91e-19 | 1 |
immature NK T cell stage I | 3.91e-19 | 1 |
immature NK T cell stage II | 3.91e-19 | 1 |
immature NK T cell stage III | 3.91e-19 | 1 |
thymocyte | 2.99e-10 | 2 |
double negative thymocyte | 2.99e-10 | 2 |
double-positive, alpha-beta thymocyte | 2.99e-10 | 2 |
DN4 thymocyte | 2.99e-10 | 2 |
DN1 thymic pro-T cell | 2.99e-10 | 2 |
DN2 thymocyte | 2.99e-10 | 2 |
DN3 thymocyte | 2.99e-10 | 2 |
immature single positive thymocyte | 2.99e-10 | 2 |
early T lineage precursor | 2.99e-10 | 2 |
T cell | 3.88e-07 | 25 |
pro-T cell | 3.88e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
hemopoietic organ | 2.04e-41 | 7 |
immune organ | 2.04e-41 | 7 |
thymus | 2.20e-41 | 4 |
hemolymphoid system gland | 2.20e-41 | 4 |
thymic region | 2.20e-41 | 4 |
pharyngeal gland | 2.20e-41 | 4 |
thymus primordium | 2.20e-41 | 4 |
neck | 2.94e-29 | 10 |
pharyngeal epithelium | 7.10e-28 | 6 |
gland of gut | 4.98e-17 | 10 |
chordate pharynx | 4.98e-17 | 10 |
pharyngeal region of foregut | 4.98e-17 | 10 |
pharynx | 1.52e-15 | 11 |
entire pharyngeal arch endoderm | 1.52e-15 | 11 |
early pharyngeal endoderm | 1.52e-15 | 11 |
mixed endoderm/mesoderm-derived structure | 2.53e-10 | 29 |
throat | 2.72e-10 | 2 |
pharyngeal arch system | 9.53e-10 | 18 |
upper respiratory tract | 2.89e-09 | 19 |
spleen | 3.35e-07 | 3 |
gastrointestinal system mesentery | 3.35e-07 | 3 |
stomach region | 3.35e-07 | 3 |
mesentery | 3.35e-07 | 3 |
gastrointestinal system serosa | 3.35e-07 | 3 |
mesentery of stomach | 3.35e-07 | 3 |
gut mesentery | 3.35e-07 | 3 |
dorsal mesentery | 3.35e-07 | 3 |
dorsal mesogastrium | 3.35e-07 | 3 |
peritoneal cavity | 3.35e-07 | 3 |
spleen primordium | 3.35e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
lymphoma | 1.18e-16 | 10 |
hematologic cancer | 1.52e-12 | 51 |
immune system cancer | 1.52e-12 | 51 |