FFCP PHASE1:Hg19::chr20:11137813..11137835,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr20:11137813..11137835,+
|short_description=p@chr20:11137813..11137835,+
|description=CAGE_peak_at_chr20:11137813..11137835,+
|association_with_transcript=NA
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr20:11137813..11137835,+ | |||
|coexpression_cluster_id=C1136 | |||
|description=CAGE_peak_at_chr20:11137813..11137835,+ | |||
|id=chr20:11137813..11137835,+ | |||
|ontology_enrichment_celltype=CL:0002621!1.88e-28!3;CL:0002166!5.69e-28!3;CL:0002159!4.51e-25!13;CL:0000362!4.63e-11!8;CL:0002077!1.26e-09!33;CL:0000312!1.83e-08!5;CL:0002076!2.99e-07!43;CL:0000240!3.44e-07!6;CL:0000311!3.44e-07!6;CL:0000079!3.44e-07!6;CL:0000237!3.44e-07!6;CL:0000036!3.44e-07!6;CL:0000357!3.44e-07!6;CL:0000114!3.44e-07!6 | |||
|ontology_enrichment_celltype_v019=CL:0002621;1.26e-30;3!CL:0002166;5.21e-30;3!CL:0002159;1.74e-25;14!CL:0000312;1.08e-18;5!CL:0000240;9.38e-16;6!CL:0000311;9.38e-16;6!CL:0000079;9.38e-16;6!CL:0000237;9.38e-16;6!CL:0000362;7.77e-11;9!CL:0002077;2.44e-10;34!CL:0002231;1.40e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002621,1.26e-30,3;CL:0002166,4.17e-30,3;CL:0002159,1.63e-25,14;CL:0000312,1.13e-18,5;CL:0000240,9.74e-16,6;CL:0000311,9.74e-16,6;CL:0000079,9.74e-16,6;CL:0000237,9.74e-16,6;CL:0000036,9.74e-16,6;CL:0000357,9.74e-16,6;CL:0000114,9.74e-16,6;CL:0000362,7.96e-11,9;CL:0002077,8.82e-11,34;CL:0002231,1.51e-08,3;CL:0000066,8.89e-07,253 | |||
|ontology_enrichment_development_v019=CL:0000357;9.38e-16;6!CL:0000114;9.38e-16;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001708!1.51e-36!4;UBERON:0001704!1.51e-36!4;UBERON:0001949!1.88e-28!3;UBERON:0002090!1.73e-24!6;UBERON:0003129!1.76e-13!11;UBERON:0000075!1.94e-11!13;UBERON:0005944!1.94e-11!13;UBERON:0004288!1.94e-11!13;UBERON:0003089!1.94e-11!13;UBERON:0001828!4.79e-11!8;UBERON:0000166!1.04e-10!21;UBERON:0005705!2.28e-10!1;UBERON:0008193!2.28e-10!1;UBERON:0002514!2.28e-10!1;UBERON:0003462!2.28e-10!1;UBERON:0008001!2.28e-10!1;UBERON:0007914!2.28e-10!1;UBERON:0003457!2.28e-10!1;UBERON:0009292!2.28e-10!1;UBERON:0007375!2.28e-10!1;UBERON:0003323!2.28e-10!1;UBERON:0002397!2.28e-10!1;UBERON:0001709!2.28e-10!1;UBERON:0004066!2.28e-10!1;UBERON:0002244!2.28e-10!1;UBERON:0005620!2.28e-10!1;UBERON:0004068!2.28e-10!1;UBERON:0004362!2.28e-10!1;UBERON:0002581!3.61e-10!1;UBERON:0007190!4.33e-10!1;UBERON:0002372!4.75e-10!1;UBERON:0001961!4.75e-10!1;UBERON:0001744!4.75e-10!1;UBERON:0001735!4.75e-10!1;UBERON:0000161!6.20e-09!35;UBERON:0003102!4.13e-08!95;UBERON:0000165!5.42e-08!28;UBERON:0000930!5.42e-08!28;UBERON:0000033!5.32e-07!123;UBERON:0000200!8.98e-07!6 | |||
|ontology_enrichment_uberon_v019=UBERON:0001949;1.26e-30;3!UBERON:0001708;8.48e-23;4!UBERON:0008895;8.48e-23;4!UBERON:0011159;1.85e-18;5!UBERON:0003929;9.53e-14;7!UBERON:0003350;3.74e-12;8!UBERON:0001828;3.74e-12;8!UBERON:0010371;8.83e-12;31!UBERON:0011137;6.23e-09;11!UBERON:0010323;6.23e-09;11!UBERON:0000486;2.05e-08;12!UBERON:0003729;7.76e-08;13!UBERON:0001003;7.31e-07;15!UBERON:0007376;7.31e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001949,1.26e-30,3;UBERON:0001708,7.18e-23,4;UBERON:0008895,7.18e-23,4;UBERON:0011159,1.62e-18,5;UBERON:0010188,1.31e-15,6;UBERON:0002539,1.31e-15,6;UBERON:0008816,1.31e-15,6;UBERON:0003350,3.74e-12,8;UBERON:0001828,3.74e-12,8;UBERON:0003102,8.42e-11,99;UBERON:0010323,5.87e-09,11;UBERON:0003729,7.76e-08,13;UBERON:0011137,3.14e-07,14;UBERON:0001003,7.41e-07,15;UBERON:0007376,7.41e-07,15;UBERON:0007383,7.41e-07,15 | |||
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|short_description=p@chr20:11137813..11137835,+ | |||
}} | }} |
Latest revision as of 11:54, 28 July 2015
Short description: | p@chr20:11137813..11137835, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr20:11137813..11137835, + |
Coexpression cluster: | C1136_Gingival_Mallassezderived_Keratinocyte_Sebocyte_Prostate_keratoacanthoma_Urothelial |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
gingival epithelial cell | 1.26e-30 | 3 |
epithelial cell of Malassez | 4.17e-30 | 3 |
general ecto-epithelial cell | 1.63e-25 | 14 |
keratinocyte | 1.13e-18 | 5 |
stratified squamous epithelial cell | 9.74e-16 | 6 |
keratin accumulating cell | 9.74e-16 | 6 |
stratified epithelial cell | 9.74e-16 | 6 |
keratinizing barrier epithelial cell | 9.74e-16 | 6 |
epithelial fate stem cell | 9.74e-16 | 6 |
stratified epithelial stem cell | 9.74e-16 | 6 |
surface ectodermal cell | 9.74e-16 | 6 |
epidermal cell | 7.96e-11 | 9 |
ecto-epithelial cell | 8.82e-11 | 34 |
epithelial cell of prostate | 1.51e-08 | 3 |
epithelial cell | 8.89e-07 | 253 |
Ontology term | p-value | n |
---|---|---|
gingival epithelium | 1.26e-30 | 3 |
jaw skeleton | 7.18e-23 | 4 |
splanchnocranium | 7.18e-23 | 4 |
primary subdivision of cranial skeletal system | 1.62e-18 | 5 |
protuberance | 1.31e-15 | 6 |
pharyngeal arch | 1.31e-15 | 6 |
embryonic head | 1.31e-15 | 6 |
epithelium of mucosa | 3.74e-12 | 8 |
gingiva | 3.74e-12 | 8 |
surface structure | 8.42e-11 | 99 |
cranial skeletal system | 5.87e-09 | 11 |
mouth mucosa | 7.76e-08 | 13 |
axial skeletal system | 3.14e-07 | 14 |
skin epidermis | 7.41e-07 | 15 |
outer epithelium | 7.41e-07 | 15 |
enveloping layer of ectoderm | 7.41e-07 | 15 |