FFCP PHASE1:Hg19::chr2:56220069..56220077,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr2:56220069..56220077,+
|short_description=p@chr2:56220069..56220077,+
|description=CAGE_peak_at_chr2:56220069..56220077,+
|association_with_transcript=NA
|E...") |
No edit summary |
||
(12 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr2:56220069..56220077,+ | |||
|coexpression_cluster_id=C91 | |||
|description=CAGE_peak_at_chr2:56220069..56220077,+ | |||
|id=chr2:56220069..56220077,+ | |||
|ontology_enrichment_celltype=CL:0002139!7.54e-26!24;CL:0000115!2.24e-19!35;CL:0000071!3.87e-18!18;CL:0002546!3.87e-18!18;CL:0002078!1.19e-14!44;CL:0000222!3.38e-13!119;CL:0000057!8.06e-12!75;CL:0000135!1.30e-11!3;CL:0000386!1.30e-11!3;CL:0000388!1.30e-11!3;CL:0000213!1.74e-10!57;CL:0000215!1.74e-10!57;CL:0000055!2.70e-10!180;CL:1000413!6.72e-10!9;CL:0002544!6.72e-10!6;CL:0002543!1.08e-09!6;CL:0005020!2.07e-09!6;CL:0002138!2.07e-09!6;CL:0005022!2.07e-09!6;CL:1000306!1.85e-08!4;CL:0002547!1.85e-08!4;CL:0002594!2.00e-08!4;CL:0002371!1.79e-07!591 | |||
|ontology_enrichment_celltype_v019=CL:0002262;1.91e-15;2!CL:1000398;1.91e-15;2!CL:0000071;7.70e-15;18!CL:0002139;2.56e-11;24!CL:0002144;9.43e-11;3!CL:0002580;9.43e-11;3!CL:0000115;1.45e-09;36!CL:1000306;1.70e-08;4!CL:0002547;1.70e-08;4!CL:0002078;4.89e-07;45 | |||
|ontology_enrichment_celltype_v019_2=CL:0002262,1.78e-15,2;CL:1000398,1.78e-15,2;CL:0000071,6.53e-15,18;CL:0002546,6.53e-15,18;CL:0000115,4.12e-13,36;CL:0002139,2.27e-11,24;CL:0002144,8.17e-11,3;CL:0002580,1.20e-10,3;CL:0002078,1.37e-10,45;CL:1000306,1.70e-08,4;CL:0002547,1.70e-08,4;CL:0000213,2.57e-08,58;CL:0000215,2.57e-08,58 | |||
|ontology_enrichment_development_v019=CL:0002546;7.70e-15;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002049!5.41e-30!79;UBERON:0007798!5.41e-30!79;UBERON:0000055!6.41e-28!69;UBERON:0004535!2.46e-26!110;UBERON:0001009!2.07e-25!113;UBERON:0001981!5.44e-23!60;UBERON:0007500!5.44e-23!60;UBERON:0004537!5.44e-23!60;UBERON:0006965!5.44e-23!60;UBERON:0004872!1.11e-21!84;UBERON:0001986!3.87e-18!18;UBERON:0004638!3.87e-18!18;UBERON:0004852!3.87e-18!18;UBERON:0003914!8.77e-15!118;UBERON:0000487!1.89e-14!22;UBERON:0001637!2.36e-13!42;UBERON:0003509!2.36e-13!42;UBERON:0004572!2.36e-13!42;UBERON:0006914!1.85e-12!25;UBERON:0000947!3.00e-12!21;UBERON:0010191!3.00e-12!21;UBERON:0000043!1.30e-11!3;UBERON:0003915!6.72e-10!9;UBERON:0004700!6.72e-10!9;UBERON:0001917!6.72e-10!9;UBERON:0001638!2.06e-09!9;UBERON:0003920!2.06e-09!9;UBERON:0004582!2.06e-09!9;UBERON:0000490!2.38e-09!138;UBERON:0004573!6.60e-09!33;UBERON:0004571!6.60e-09!33;UBERON:0000415!1.85e-08!4;UBERON:0007240!1.85e-08!4;UBERON:0005742!1.85e-08!4;UBERON:0005734!1.85e-08!4;UBERON:0004664!1.85e-08!4;UBERON:0004663!1.85e-08!4;UBERON:0001310!2.00e-08!4;UBERON:0004111!3.39e-08!241;UBERON:0000477!1.54e-07!286;UBERON:0000025!4.31e-07!194;UBERON:0001473!4.65e-07!8;UBERON:0004536!4.65e-07!8;UBERON:0006558!4.65e-07!8 | |||
|ontology_enrichment_uberon_v019=UBERON:0001281;1.91e-15;2!UBERON:0003497;1.91e-15;2!UBERON:0003909;1.91e-15;2!UBERON:0003835;1.91e-15;2!UBERON:0004638;7.70e-15;18!UBERON:0001986;7.70e-15;18!UBERON:0004852;7.70e-15;18!UBERON:0000487;2.80e-12;22!UBERON:0006914;6.81e-11;25!UBERON:0010523;9.43e-11;3!UBERON:0001915;9.43e-11;3!UBERON:0001280;9.43e-11;3!UBERON:0004647;9.43e-11;3!UBERON:0001982;9.43e-11;3!UBERON:0007500;5.50e-09;56!UBERON:0001981;5.50e-09;56!UBERON:0004537;5.50e-09;56!UBERON:0004797;1.70e-08;4!UBERON:0000415;1.70e-08;4!UBERON:0007240;1.70e-08;4!UBERON:0005742;1.70e-08;4!UBERON:0005734;1.70e-08;4!UBERON:0004664;1.70e-08;4!UBERON:0004663;1.70e-08;4!UBERON:0000490;2.72e-08;33!UBERON:0000055;7.28e-07;65 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001281,1.78e-15,2;UBERON:0003497,1.78e-15,2;UBERON:0003909,1.78e-15,2;UBERON:0003835,1.78e-15,2;UBERON:0004638,6.53e-15,18;UBERON:0001986,6.53e-15,18;UBERON:0004852,6.53e-15,18;UBERON:0004872,1.51e-12,83;UBERON:0007500,2.17e-12,59;UBERON:0001981,2.17e-12,59;UBERON:0004537,2.17e-12,59;UBERON:0006965,2.17e-12,59;UBERON:0000487,2.44e-12,22;UBERON:0006914,6.05e-11,25;UBERON:0010523,8.17e-11,3;UBERON:0001915,8.17e-11,3;UBERON:0001982,8.17e-11,3;UBERON:0000055,8.57e-11,68;UBERON:0001280,8.99e-11,3;UBERON:0004647,8.99e-11,3;UBERON:0005171,8.99e-11,3;UBERON:0004535,1.33e-09,109;UBERON:0002049,1.90e-09,78;UBERON:0007798,1.90e-09,78;UBERON:0001009,2.37e-09,112;UBERON:0003914,5.86e-09,117;UBERON:0000415,1.70e-08,4;UBERON:0007240,1.70e-08,4;UBERON:0005742,1.70e-08,4;UBERON:0005734,1.70e-08,4;UBERON:0004664,1.70e-08,4;UBERON:0004663,1.70e-08,4 | |||
|phase1_expression=0.181678379270557,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,0,0,0,0,0.175669571386252,0,0,0,0,0,0,0,0,0,0.198762407366705,0.860234595106124,1.38856200643038,0,0,0,0.417989933073621,0,0.35576626268671,0,0,1.52054421143703,0,0.367663080345869,0,0.535798369704479,0,0.112611480483322,1.53316637465883,0,0.366403487860815,0,0,0,0,0.12663051166458,4.63432132846266,0.286836620748814,0,1.12135520028461,0,0,0.311211035399766,0,0,0.151357427644931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.538168907066586,0,0,0,0.103052529238439,0.257640540045629,0,0.337552664482532,0.194874010322397,0,0.0920498986422993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.40241773803446,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117408694235822,0.144366447761074,0.462985512576611,0.190254152234598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144119953416961,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205476322550383,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207970861530807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.07423381301644,0.280660094433074,0,0,0.160853921143607,0,0,0,0,0,0.116210378459959,0,0,0,0.114814448164607,0,0,0,0,0,0,0,0,0.170093705276516,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0,0,0.127612712494584,0,0,0.62962469366128,0,0,0.532306030317022,0,0,0.429374660225974,0,0.316379424718726,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202910376962704,0.30982349809975,0,0,0.0982490410131212,0.35667105148125,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149254802886874,0,0,0,0.251567901752575,0,0,0.151230923763239,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118193840883968,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.371995018166751,0.462175628631418,0.432626562123789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0.181678379270557,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,0,0,0,0,0.175669571386252,0,0,0,0,0,0,0,0,0,0.198762407366705,0.860234595106124,1.38856200643038,0,0,0,0.417989933073621,0,0.35576626268671,0,0,1.52054421143703,0,0.367663080345869,0,0.535798369704479,0,0.112611480483322,1.53316637465883,0,0.366403487860815,0,0,0,0,0.12663051166458,4.63432132846266,0.286836620748814,0,1.12135520028461,0,0,0.311211035399766,0,0,0.151357427644931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.538168907066586,0,0,0,0.103052529238439,0.257640540045629,0,0.337552664482532,0.194874010322397,0,0.0920498986422993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.40241773803446,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117408694235822,0.144366447761074,0.462985512576611,0.190254152234598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144119953416961,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205476322550383,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207970861530807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.07423381301644,0.280660094433074,0,0,0.160853921143607,0,0,0,0,0,0.116210378459959,0,0,0,0.114814448164607,0,0,0,0,0,0,0,0,0.170093705276516,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0,0,0.127612712494584,0,0,0.62962469366128,0,0,0.532306030317022,0,0,0.429374660225974,0,0.316379424718726,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202910376962704,0.30982349809975,0,0,0.0982490410131212,0.35667105148125,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149254802886874,0,0,0,0.251567901752575,0,0,0.151230923763239,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118193840883968,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.371995018166751,0.462175628631418,0.432626562123789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr2:56220069..56220077,+ | |||
}} | }} |
Latest revision as of 11:02, 29 July 2015
Short description: | p@chr2:56220069..56220077, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:56220069..56220077, + |
Coexpression cluster: | C91_Fibroblast_Smooth_mesenchymal_Mesothelial_Small_Preadipocyte_Hair |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of sinusoid | 1.78e-15 | 2 |
endothelial cell of hepatic sinusoid | 1.78e-15 | 2 |
blood vessel endothelial cell | 6.53e-15 | 18 |
embryonic blood vessel endothelial progenitor cell | 6.53e-15 | 18 |
endothelial cell | 4.12e-13 | 36 |
endothelial cell of vascular tree | 2.27e-11 | 24 |
capillary endothelial cell | 8.17e-11 | 3 |
preadipocyte of the breast | 1.20e-10 | 3 |
meso-epithelial cell | 1.37e-10 | 45 |
fibroblast of tunica adventitia of artery | 1.70e-08 | 4 |
fibroblast of the aortic adventitia | 1.70e-08 | 4 |
lining cell | 2.57e-08 | 58 |
barrier cell | 2.57e-08 | 58 |
Ontology term | p-value | n |
---|---|---|
hepatic sinusoid | 1.78e-15 | 2 |
abdomen blood vessel | 1.78e-15 | 2 |
sinusoid | 1.78e-15 | 2 |
abdominal segment blood vessel | 1.78e-15 | 2 |
blood vessel endothelium | 6.53e-15 | 18 |
endothelium | 6.53e-15 | 18 |
cardiovascular system endothelium | 6.53e-15 | 18 |
splanchnic layer of lateral plate mesoderm | 1.51e-12 | 83 |
epithelial tube open at both ends | 2.17e-12 | 59 |
blood vessel | 2.17e-12 | 59 |
blood vasculature | 2.17e-12 | 59 |
vascular cord | 2.17e-12 | 59 |
simple squamous epithelium | 2.44e-12 | 22 |
squamous epithelium | 6.05e-11 | 25 |
microcirculatory vessel | 8.17e-11 | 3 |
endothelium of capillary | 8.17e-11 | 3 |
capillary | 8.17e-11 | 3 |
vessel | 8.57e-11 | 68 |
liver parenchyma | 8.99e-11 | 3 |
liver lobule | 8.99e-11 | 3 |
hepatic duct | 8.99e-11 | 3 |
cardiovascular system | 1.33e-09 | 109 |
vasculature | 1.90e-09 | 78 |
vascular system | 1.90e-09 | 78 |
circulatory system | 2.37e-09 | 112 |
epithelial tube | 5.86e-09 | 117 |
artery wall | 1.70e-08 | 4 |
tunica adventitia of artery | 1.70e-08 | 4 |
adventitia | 1.70e-08 | 4 |
tunica adventitia of blood vessel | 1.70e-08 | 4 |
aorta tunica adventitia | 1.70e-08 | 4 |
aorta wall | 1.70e-08 | 4 |