FFCP PHASE1:Hg19::chr4:134084224..134084238,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr4:134084224..134084238,+ | |||
|description=CAGE_peak_at_chr4:134084224..134084238,+ | |||
|id=chr4:134084224..134084238,+ | |||
|ontology_enrichment_celltype=CL:0002150!1.34e-14!3;CL:0000861!1.34e-14!3 | |||
|ontology_enrichment_celltype_v019=CL:0002127;7.02e-13;1!CL:0000911;7.02e-13;1!CL:0000814;7.02e-13;1!CL:0002593;9.27e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002127,7.03e-13,1;CL:0000914,7.03e-13,1;CL:0000911,7.03e-13,1;CL:0000814,7.03e-13,1;CL:0002042,7.03e-13,1;CL:0002039,7.03e-13,1;CL:0002040,7.03e-13,1;CL:0002041,7.03e-13,1;CL:0000893,4.56e-07,2;CL:0002489,4.56e-07,2;CL:0000809,4.56e-07,2;CL:0000808,4.56e-07,2;CL:0000894,4.56e-07,2;CL:0000806,4.56e-07,2;CL:0000807,4.56e-07,2;CL:0000805,4.56e-07,2;CL:0002425,4.56e-07,2 | |||
|ontology_enrichment_development_v019=UBERON:0008947;5.32e-30;29!CL:0002425;4.55e-07;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:6193;2.91e-12;1!DOID:3350;9.27e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:0050687,2.27e-15,143;DOID:305,2.06e-13,106;DOID:6193,3.85e-12,1;DOID:162,6.95e-10,235;DOID:14566,1.24e-09,239 | |||
|ontology_enrichment_uberon=UBERON:0001737!3.73e-41!9;UBERON:0001557!1.28e-27!19;UBERON:0000369!4.71e-10!4;UBERON:0002435!4.71e-10!4;UBERON:0000204!4.71e-10!4;UBERON:0010082!4.71e-10!4;UBERON:0000072!4.83e-10!46;UBERON:0001049!1.48e-09!57;UBERON:0005068!1.48e-09!57;UBERON:0006241!1.48e-09!57;UBERON:0007135!1.48e-09!57;UBERON:0002616!3.55e-09!59;UBERON:0000955!1.25e-08!69;UBERON:0006238!1.25e-08!69;UBERON:0008947!1.88e-08!38;UBERON:0003258!1.88e-08!38;UBERON:0000065!2.02e-08!53;UBERON:0001017!5.01e-08!82;UBERON:0002308!1.14e-07!9;UBERON:0000125!1.14e-07!9;UBERON:0005743!1.59e-07!86;UBERON:0001869!4.13e-07!32;UBERON:0000063!4.22e-07!97 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;1.20e-98;9!UBERON:0001557;1.20e-98;9!UBERON:0000072;9.18e-22;37!UBERON:0000065;2.30e-18;44!UBERON:0001004;1.08e-09;65!UBERON:0002456;9.27e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,9.64e-99,9;UBERON:0001557,2.30e-57,19;UBERON:0008947,1.12e-22,38;UBERON:0003258,1.12e-22,38;UBERON:0000072,1.73e-22,47;UBERON:0000065,2.07e-19,54;UBERON:0001004,8.20e-14,74;UBERON:0001041,1.51e-11,87;UBERON:0004921,4.48e-08,118 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.672325146451775,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.32592226663359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113432183160021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.54920400119532,3.87744787179634,3.61516544825223,2.20587945464788,2.17879444092406,1.42362371466658,1.48314438976181,1.56977172100277,2.30848294167834,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.04383147970873,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316379424718726,0,0,0,0,0,0,0,0,0,0,0,0,0,1.05650146756755,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.70918513803957,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.278406173895242,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123084805461069,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0.110579259931225,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30607276163049,0,0,0,0,0,0,0,0,2.4961441142365,0,0.195984794828755,0,0.17472666824203,1.20390222730132,1.9351266257817,1.38869702463753,1.47807822695777,0,0,0,0,0,0.126621591911757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254019996197353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.244052529803926,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.226705925512272,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.491545817507439,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128458450192919,0,0,0.41023272848151,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202612753855184,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115233987555779,0,0.0679697329768317,0,0,0,0,0.157115589916002,0,0,0,0,0,0,1.04617282831313,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196308467114945,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr4:134084224..134084238,+ | |||
}} |
Latest revision as of 01:36, 30 July 2015
Short description: | p@chr4:134084224..134084238, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr4:134084224..134084238, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
innate effector T cell | 7.03e-13 | 1 |
immature NK T cell | 7.03e-13 | 1 |
effector T cell | 7.03e-13 | 1 |
mature NK T cell | 7.03e-13 | 1 |
immature NK T cell stage IV | 7.03e-13 | 1 |
immature NK T cell stage I | 7.03e-13 | 1 |
immature NK T cell stage II | 7.03e-13 | 1 |
immature NK T cell stage III | 7.03e-13 | 1 |
thymocyte | 4.56e-07 | 2 |
double negative thymocyte | 4.56e-07 | 2 |
double-positive, alpha-beta thymocyte | 4.56e-07 | 2 |
DN4 thymocyte | 4.56e-07 | 2 |
DN1 thymic pro-T cell | 4.56e-07 | 2 |
DN2 thymocyte | 4.56e-07 | 2 |
DN3 thymocyte | 4.56e-07 | 2 |
immature single positive thymocyte | 4.56e-07 | 2 |
early T lineage precursor | 4.56e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
larynx | 9.64e-99 | 9 |
upper respiratory tract | 2.30e-57 | 19 |
respiratory primordium | 1.12e-22 | 38 |
endoderm of foregut | 1.12e-22 | 38 |
segment of respiratory tract | 1.73e-22 | 47 |
respiratory tract | 2.07e-19 | 54 |
respiratory system | 8.20e-14 | 74 |
foregut | 1.51e-11 | 87 |
subdivision of digestive tract | 4.48e-08 | 118 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 2.27e-15 | 143 |
carcinoma | 2.06e-13 | 106 |
epithelioid sarcoma | 3.85e-12 | 1 |
cancer | 6.95e-10 | 235 |
disease of cellular proliferation | 1.24e-09 | 239 |