FFCP PHASE1:Hg19::chr9:75773628..75773662,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr9:75773628..75773662,+ | |||
|coexpression_cluster_id=C827 | |||
|description=CAGE_peak_at_chr9:75773628..75773662,+ | |||
|id=chr9:75773628..75773662,+ | |||
|ontology_enrichment_celltype=CL:0002057!2.54e-19!42;CL:0000860!4.90e-18!45;CL:0000557!7.89e-16!71;CL:0000839!6.87e-15!70;CL:0000766!7.25e-15!76;CL:0002009!3.04e-14!65;CL:0002194!1.31e-13!63;CL:0000576!1.31e-13!63;CL:0000040!1.31e-13!63;CL:0000559!1.31e-13!63;CL:0002371!1.38e-10!591;CL:0000144!3.07e-10!625;CL:0000548!3.84e-10!679;CL:0000004!3.84e-10!679;CL:0000255!3.84e-10!679;CL:0000048!3.99e-10!430;CL:0000012!4.38e-10!682;CL:0000723!5.93e-10!436;CL:0000034!4.16e-09!444;CL:0000063!1.60e-08!578;CL:0000134!6.73e-08!358;CL:0002320!8.95e-08!365;CL:0000763!9.89e-07!112;CL:0000049!9.89e-07!112 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.04e-24;33!CL:0002057;1.04e-24;33!CL:0000473;9.03e-19;39!CL:0000234;9.03e-19;39!CL:0000576;3.58e-13;48!CL:0000766;2.70e-10;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,7.94e-24,42;CL:0002057,7.94e-24,42;CL:0000473,6.77e-22,48;CL:0000234,6.77e-22,48;CL:0000557,4.43e-21,67;CL:0000839,1.35e-19,66;CL:0000766,2.70e-19,72;CL:0002009,1.46e-18,61;CL:0002194,1.08e-17,59;CL:0000576,1.08e-17,59;CL:0000040,1.08e-17,59;CL:0000559,1.08e-17,59;CL:0000048,8.06e-11,427;CL:0000723,9.26e-11,433;CL:0000134,1.86e-10,354;CL:0002320,7.27e-10,361;CL:0000034,9.71e-10,441;CL:0000763,2.36e-09,108;CL:0000049,2.36e-09,108;CL:0000219,1.11e-08,386 | |||
|ontology_enrichment_development_v019=CL:0002057;1.02e-17;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!1.19e-15!80;UBERON:0002204!2.74e-15!167;UBERON:0001474!3.41e-14!86;UBERON:0004765!4.33e-14!101;UBERON:0001434!4.33e-14!101;UBERON:0000926!2.69e-11!448;UBERON:0004120!2.69e-11!448;UBERON:0006603!2.69e-11!448;UBERON:0002390!4.17e-11!102;UBERON:0003061!4.17e-11!102;UBERON:0002193!2.47e-10!112;UBERON:0003081!2.92e-09!216;UBERON:0002384!5.73e-08!375;UBERON:0002405!2.66e-07!115 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,4.81e-20,76;UBERON:0001474,1.56e-18,82;UBERON:0004765,1.93e-18,90;UBERON:0001434,4.23e-16,100;UBERON:0002405,2.09e-15,93;UBERON:0002390,2.54e-15,98;UBERON:0003061,2.54e-15,98;UBERON:0002193,1.04e-13,108;UBERON:0002204,1.42e-13,167;UBERON:0000926,4.43e-11,315;UBERON:0004120,4.43e-11,315;UBERON:0006603,4.43e-11,315;UBERON:0003081,1.53e-10,203;UBERON:0002384,6.18e-10,371 | |||
|phase1_expression=1.99846217197612,4.06790995392868,1.26858963686374,3.00219895059391,1.34088328328186,2.61701557230111,0,1.89515962028049,0.261185628199839,0,0,0,0.527533956456907,0.618831764800233,1.65698687863958,4.70627602516243,2.41077811209591,1.46062018077475,2.92759679274304,0.246242116153576,0,0,0.286235987131057,1.50561867580173,1.00434111675842,0.0764134057479513,0,0.157421562627358,1.18009283054671,0.767658796194425,2.01260960310899,5.51652734687356,0,2.21852406100073,0,0,0.587200878669695,1.66198622559563,1.40381113229099,1.51907609501096,0,0,1.28787783817093,8.43309784921475,3.02300754951048,4.36651310138069,9.52959051313307,3.28934310417461,3.71647645074124,8.34307937734236,4.61089271752381,8.27687804610048,15.1688099524112,3.22742341791913,6.77132432971709,10.7298133539285,3.27487380069415,5.8428105955722,15.3041946185451,4.8139354061414,8.31138263538754,7.58657990429447,6.78176435913548,4.26224750532694,12.7692064996577,5.10646702222026,1.86846674698672,12.3111845975804,6.25779502104242,6.5156653411535,12.7133895553007,2.20966581592539,8.54448446090388,1.69004229049553,1.06302149982522,0.209658645508376,1.68492946719743,1.80212271409808,1.12507910687956,0.570025487482497,0.39783335439818,0.730656615058536,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0.790152254325231,0.196709770113833,2.35806457649499,1.43921049299656,0,0,0,0,0,0.883817722424512,0.221533894583621,0.270803863765016,0,0,1.47994114143309,0.829050053357545,0.579606171470105,0.296573126324121,0,0,0.339928028092699,1.91610246800961,0,0.759059076058509,0,0,0,0.451725357233318,0.895906278080929,3.74792179657038,0.473554504088034,0.821127996921047,0.201606743224732,0.534880391567015,0.434473211648397,0,0.670700859703636,0.383587685530591,1.80719576192283,0.50133791063589,1.88300474649071,0,1.45990461090791,0.850813354476611,1.55210578223795,1.31752178539689,0,0,0.370784442784429,1.29818957461873,0.696518949197069,1.46253756570752,0.238490624305342,0,0,0,0,0.347140501607594,1.13061588384802,0,0.825354125820202,0.208994966536811,1.29208379584664,0,1.33888245105868,0,0,0.732186172644509,1.10298924103761,0,0.714397826272638,0.898117490504679,1.23872628531654,0,1.89853131913626,0,0,0,0.436094052142534,1.98788780678127,2.02608818663328,1.58891016975863,1.72101972449288,1.41867352879343,2.24271040056923,0,0.24666754841716,0,1.21239604862719,0.980771418680752,0.151357427644931,1.15235184896,0,1.24864030732128,0.570471821544449,2.09228152772521,1.29177948508141,1.29498355494505,0.421352420106746,1.02077085627447,0.368502951935304,0.206651562351531,0,1.97813543422845,0,0,0.505008341862199,0.500474079487857,0,0.438977620880838,0.612975591598039,0.45071417671979,0.680593098960126,2.15267562826634,1.49490172172997,0.635795703478686,0.900273288253207,0.92747276314595,2.83404594050192,1.11670113798954,1.68776332241266,1.46155507741798,2.27190396819703,1.01254888506529,0.646584227275248,2.13005755509969,1.20902517873168,0.67824236924195,3.47869535693934,2.45471508531751,2.29443676311203,0,0,0.116193942869518,0.414644220061482,0,0,0,1.28648187638577,0,1.85747171212792,1.44375896333917,0.591534000199219,0,0.723033089650446,0.110293972732394,0.435758888184812,0.237270619111097,0.808987848960987,0.784885860501384,0.769494313892781,0,0,0,1.47008711385542,0,0,0,0,0,1.02940686179115,1.64625428112938,0,1.60846355858609,0.925884451585296,0,0,0,0.463721619900307,0.70445216541493,0.577465791044295,0.925971025153221,0.380508304469197,0,0,0,0.702012795417713,1.0404181360211,1.87467667973554,1.84780341018745,2.97727704209012,0.268675568108545,2.90633938513962,0.383382679165211,3.4486426652716,1.40877494421162,8.08579650609011,5.90891809009542,3.91351543621778,0,0.381988425558278,0,1.71072446022705,0.514137463516618,1.20137223137567,0,0.112131084345361,0,1.1734125731352,0.258543431515556,0,0,0.26593811658487,2.08014873822732,0.514414748524284,0,0.266422179016099,0.57191197463259,1.08524321078289,0,0.977208552881205,0.355391948742546,0,1.20575750823834,0,1.19967589418468,1.2162378064119,0,2.10833939483032,0.958499421966331,1.14861935834114,0,2.89562613335158,2.05476322550383,1.61154866915906,0,0,0.431255149719035,0.385029108839245,0.254094624222463,0,0,0.335032530668698,2.55175500661265,0.749007023947182,5.9832291840805,0,0.49076596687656,0.500170521059677,0.271265023699736,1.03985430765404,6.42344359669782,1.41932173530541,1.28855556491985,0.300946099727719,0,0,0.664225598535437,0.368738337083406,1.30325421702124,0.195801157462741,0,0.206768026122887,2.37285620900479,0.533637789017222,0,0,0.30239029332968,0.744323423456331,1.38115775959256,1.12264037773229,2.30650468660262,2.04682899626681,2.0911009748669,0,0.771048469013278,0.532685175939381,0.98552587216571,0.519254429183621,1.85936605535935,0,1.60405176242628,4.9723734025384,1.03333003348146,1.0925470080403,1.04899531967539,0,0.15403067420883,0,0,0.105551628892876,0,0.680374821106063,2.15915916102139,0,0,0.501689773854853,0.254876273045038,0,0,0,0.261435451024901,0.512900250232778,0.328014645699706,0.976135183992909,1.03041011647722,1.00726411300178,0.660075999364704,0,2.60024098414608,3.21367859688319,0.193341436584244,0.616194468458578,0.307007349452259,0.827019434907183,0.966782203814463,0.290033387828457,0.596586391912706,0.0890320356467374,3.30569830721956,2.11409074101617,0.765676274967505,1.51736671283325,4.64845549297286,2.51849877464512,0,0.616067160352178,0.532306030317022,0,0.74129687641568,1.28812398067792,0.372158369359667,0.316379424718726,0.38126038784765,0,1.71175595213568,0.318203247925937,0.78494864019923,0.179872457583315,0.823611089208164,1.17812402345686,0.606547444719948,1.58510321173008,1.68503382495592,0,1.21856744815642,1.05650146756755,1.50149902548784,1.1312434556297,2.26016233240486,0.551365343546124,3.98063385144732,1.75380354101505,0,1.31178950409327,0.405820753925408,0.92947049429925,1.69017361519345,0.717056761020258,0.491245205065606,0.7133421029625,1.77380532035299,3.16661452946496,1.97576935775941,0,0,0.48111056362756,0,0,0.847294206991012,0.86101074534246,0,0.443430153536676,0.689170200620878,0,0.764637207142375,0,1.42939065274673,0.411362273086194,0,1.62009431171434,1.58625035258854,0,0,1.22520107990516,0,0,0,0.637705090915289,0.59873811429845,0,1.05836791361941,0,0.280797178113459,0,0,0,0.169291777801603,0.1605880751037,0,0,0.343505344755765,0,0.223676107892416,0,0.390776190804081,0.556812347790485,0,0,0,0,0.37428108081644,0.879049075631364,3.51945513073589,0,0.284136146806413,9.31103490476991,7.12715233998333,3.68592842519078,0,0.140669416410513,0.222617410045812,0.16480387422676,0,0.796991953004279,0.828851746593443,0,1.63629892003448,0,3.42143546427988,0.359473404589307,0.716084698702437,0.511572370226872,0.394573622547734,2.3948309234694,2.22273980289274,0,0.0927680981618513,0,0,0,1.44999915086959,0.227586896570999,3.0510438035132,0.945550727071745,0,0.291604613383254,0,0,0.120596438625408,0,0,0,0,0.10893846351899,0.975966209950223,1.15425387755696,0.227884111694002,0,0.0897576444097721,0,10.5270382711533,1.74035427463538,18.6562171606522,0,1.8837630767403,0.166211681900156,0.225595660617181,0,0.167821586975843,1.13852239634511,0,1.47698645169619,1.63232808159148,0,0,0,0.530745387020035,0,0,0,0,0,0.802577647298789,0,0,0.586993856796269,2.18502341580683,0,0,0.30607276163049,0.379119477770928,0,0.103688191397247,2.65861549082874,0.992975867626496,1.88359751044335,2.38944859545918,0.284609546029793,1.52542140314453,7.81018822508089,0.783939179315021,0.261177619741208,0.52418000472609,2.0638323896594,0.387025325156341,0.365446585430928,0.410577285266046,18.7188801822649,0,0.90392296312213,0.822251547880505,0.397429223405979,0.0633107959558787,0.195551382734803,0.320635281006135,0.213452994739353,1.9980960958213,0.432271251462318,0.687219576995494,0,0.576219191952599,0.124252535565433,3.06402245001834,0.951329442515298,1.46443984837266,0.407992870545287,0,0,0,0,1.71906176567983,0,1.11712960508902,0,0.717873024576814,0.399358000997982,0,0.223171457441873,0.0671834724867263,1.44119953416961,0,0,0,0,0.393709926058995,0.0846733320657845,0,0,0,0,0,1.1248694577575,5.41661368190565,0,0.670869375198532,0,0,0,0.537862017998534,0.959575986597226,0,0.662091970365432,0,5.97299561929084,5.18532894720761,7.83809664262582,1.19730191562487,0.246277562248017,1.02232813071253,0.339936274560377,0,0,0.129282956361551,0,0.684347351537318,0,1.28144895081234,0,1.24271716604159,0.496166021811951,0,0,0,2.72008901684737,2.7575888342497,3.67614692116154,3.93447156851765,0,0,0.366078794705889,0,0.573409195690071,0,0,0,0.999843263696853,0.303298235083296,0,0,0,0,1.34329322598187,0.934853239388898,3.32883516901568,1.89403005275089,1.76097531226803,1.77962244319307,4.80564143633539,3.4783112465545,0.777186002913902,1.77426179987561,0.796483835818512,1.34940933649081,1.24210365501008,3.7323558705677,2.92425886013794,1.04349012362347,1.50257608997218,3.42724690951916,3.66183659884195,0.909243296012797,1.18151612746737,1.85613503951397,1.59238355479446,1.60011105865261,2.40376993627955,1.01024846629776,0,0.192619830407303,0.428883182749851,1.56596575179127,1.13352962756136,3.24131464053368,3.18157715858408,0.895444205407437,0.308801447160972,0.219284049578707,1.41351316756705,1.92914038270915,0.844712203265363,0.76872455576384,0,3.03859956177382,0,0,0.398594520940089,0.327130788511688,1.96565909307848,2.94927490504463,0.422624246717254,0.39997479170986,0,0.172214979660816,0,1.10463570151104,0.699397538597222,1.86623178009892,0,0,0,0,0,0,1.36329340684902,0,3.4980478571876,0,0,1.76337971845342,2.4499638188256,0,0,0.159633859057151,0.205116364240755,0,0,0,0,0.88332946650923,0.707818340086442,2.56800037930351,1.27078232765372,2.288292572803,0,0,0.150420656698515,0.20170506870352,0.781514011233092,0,3.43921026771203,0.591424344868181,0,0,0,0,0,0,0.992422356778588,0.351742488719241,0.638812138197976,0,0,0,0,1.68534503309014,0.115233987555779,1.37190407549935,0,0,0.945550727071746,0.222462803784138,0.235479278551542,0,0.560544326627578,0.913158720509496,0.863710364874486,0,0.142953088353313,0,1.51113852978563,0.347716544605159,0.801711364730253,1.03608082081518,1.3657478167516,0.691259661814092,0,0.709992004383392,1.27820107138737,0.846774100381858,2.2910686854405,0.31020638566432,2.8666168169323,0.111855431797792,1.17780280338292,0,0.647428837187895,0.205325613712494,0,0.485710993059139,0,0,0,1.24240690242856,0,0,0,0,0,0,0,0.392616934229891,0,2.113278637917,1.52934403219035,0.0939839179798536,0.0644578879735772,0,0.535661815816973,2.11736923029415,1.20362050033752,0.730336388246517,0.458729283404541,0,0,0,0,0.5290268405154,1.85997509083376,2.31087814315709,4.32626562123789,0.252332849670158,0.218531143927391,0.126698501011437,0.713921808193872,0,0.36757959813938,0,0.227336094654718,0,0,0,6.18378547512845,0,0,0,1.56984607612859,0.190941474834495,0,10.8858373948481,2.39563310759697,1.6164492723501,1.93649954560226,1.99596213927608,0.162806537221949,1.3874554964103,0,1.16772762738563,0,0.122241444182866,2.03448089157869,0,0.805095174364105,0 | |||
|short_description=p@chr9:75773628..75773662,+ | |||
}} |
Latest revision as of 02:41, 1 August 2015
Short description: | p@chr9:75773628..75773662, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr9:75773628..75773662, + |
Coexpression cluster: | C827_CD14_throat_tongue_chorionic_esophagus_endometrioid_Olfactory |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 7.94e-24 | 42 |
CD14-positive, CD16-negative classical monocyte | 7.94e-24 | 42 |
defensive cell | 6.77e-22 | 48 |
phagocyte | 6.77e-22 | 48 |
granulocyte monocyte progenitor cell | 4.43e-21 | 67 |
myeloid lineage restricted progenitor cell | 1.35e-19 | 66 |
myeloid leukocyte | 2.70e-19 | 72 |
macrophage dendritic cell progenitor | 1.46e-18 | 61 |
monopoietic cell | 1.08e-17 | 59 |
monocyte | 1.08e-17 | 59 |
monoblast | 1.08e-17 | 59 |
promonocyte | 1.08e-17 | 59 |
multi fate stem cell | 8.06e-11 | 427 |
somatic stem cell | 9.26e-11 | 433 |
mesenchymal cell | 1.86e-10 | 354 |
connective tissue cell | 7.27e-10 | 361 |
stem cell | 9.71e-10 | 441 |
myeloid cell | 2.36e-09 | 108 |
common myeloid progenitor | 2.36e-09 | 108 |
motile cell | 1.11e-08 | 386 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 4.81e-20 | 76 |
bone element | 1.56e-18 | 82 |
skeletal element | 1.93e-18 | 90 |
skeletal system | 4.23e-16 | 100 |
immune system | 2.09e-15 | 93 |
hematopoietic system | 2.54e-15 | 98 |
blood island | 2.54e-15 | 98 |
hemolymphoid system | 1.04e-13 | 108 |
musculoskeletal system | 1.42e-13 | 167 |
mesoderm | 4.43e-11 | 315 |
mesoderm-derived structure | 4.43e-11 | 315 |
presumptive mesoderm | 4.43e-11 | 315 |
lateral plate mesoderm | 1.53e-10 | 203 |
connective tissue | 6.18e-10 | 371 |