FFCP PHASE1:Mm9::chr3:95023652..95023663,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr3:95023652..95023663,-
|short_description=p@chr3:95023652..95023663,-
|description=CAGE_peak_at_chr3:95023652..95023663,-
|association_with_transcript=NA
|E...") |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|HGNC= | |HGNC= | ||
|TSSclassifier=NA | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr3:95023652..95023663,- | |||
|description=CAGE_peak_at_chr3:95023652..95023663,- | |||
|id=chr3:95023652..95023663,- | |||
|ontology_enrichment_celltype=CL:0000117!2.37e-17!23;CL:0000337!2.37e-17!23;CL:0000540!1.64e-11!33;CL:0000047!1.64e-11!33;CL:0000031!1.64e-11!33;CL:0000404!1.64e-11!33;CL:0000393!8.49e-09!39;CL:0000211!8.49e-09!39;CL:0002609!3.82e-08!6;CL:0002319!1.95e-07!43;CL:0000221!3.86e-07!44;CL:0000133!3.86e-07!44 | |||
|ontology_enrichment_celltype_v019_2=CL:0002614,1.27e-32,3;CL:0000117,3.03e-17,23;CL:0000337,3.03e-17,23;CL:0000540,4.66e-12,33;CL:0000047,4.66e-12,33;CL:0000031,4.66e-12,33;CL:0000404,4.66e-12,33;CL:0000393,3.26e-10,39;CL:0000211,3.26e-10,39;CL:0002319,2.88e-09,43;CL:0000221,4.68e-09,44;CL:0000133,4.68e-09,44;CL:0002476,8.63e-07,2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002020!1.11e-19!34;UBERON:0001049!1.30e-19!52;UBERON:0005068!1.30e-19!52;UBERON:0006241!1.30e-19!52;UBERON:0007135!1.30e-19!52;UBERON:0002346!2.11e-17!71;UBERON:0003075!2.11e-17!71;UBERON:0007284!2.11e-17!71;UBERON:0001017!5.83e-15!73;UBERON:0005743!5.83e-15!73;UBERON:0003080!8.65e-15!40;UBERON:0002791!9.56e-15!29;UBERON:0003528!9.56e-15!29;UBERON:0001893!9.56e-15!29;UBERON:0003056!1.06e-14!49;UBERON:0000073!2.96e-14!75;UBERON:0001016!2.96e-14!75;UBERON:0002780!3.82e-14!39;UBERON:0001890!3.82e-14!39;UBERON:0006240!3.82e-14!39;UBERON:0002616!7.67e-14!49;UBERON:0000955!2.18e-13!50;UBERON:0006238!2.18e-13!50;UBERON:0000033!2.31e-13!63;UBERON:0004121!1.18e-12!102;UBERON:0000924!1.18e-12!102;UBERON:0006601!1.18e-12!102;UBERON:0007811!4.22e-09!86;UBERON:0002420!1.12e-08!8;UBERON:0007245!1.12e-08!8;UBERON:0010009!1.12e-08!8;UBERON:0010011!1.12e-08!8;UBERON:0000454!1.12e-08!8;UBERON:0000956!3.61e-08!21;UBERON:0001869!3.61e-08!21;UBERON:0000203!3.61e-08!21;UBERON:0000153!3.65e-08!94;UBERON:0002240!1.28e-07!6;UBERON:0005174!1.28e-07!6;UBERON:0001137!1.28e-07!6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002038,1.27e-32,3;UBERON:0009663,1.27e-32,3;UBERON:0009661,1.27e-32,3;UBERON:0000125,1.27e-32,3;UBERON:0002308,1.27e-32,3;UBERON:0002950,1.09e-24,4;UBERON:0001891,1.09e-24,4;UBERON:0009616,1.09e-24,4;UBERON:0010286,1.09e-24,4;UBERON:0002420,4.15e-22,8;UBERON:0007245,4.15e-22,8;UBERON:0010009,4.15e-22,8;UBERON:0010011,4.15e-22,8;UBERON:0000454,4.15e-22,8;UBERON:0003528,1.16e-09,29;UBERON:0002791,1.16e-09,29;UBERON:0001893,1.16e-09,29;UBERON:0002020,2.88e-08,34;UBERON:0002780,3.17e-07,39;UBERON:0001890,3.17e-07,39;UBERON:0006240,3.17e-07,39;UBERON:0003080,4.78e-07,40 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0.171217968225505,0,0,0,0,0,0,0,0,0,0,0.0992909512008853,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202316460859598,1.5869729378161,0,0,0,0,0,0,0,0,0.207379224616955,0.675029691658453,0.420649922702764,0.285650984403804,0.662605622854841,0.489963196859816,0.958454710182364,1.83843757322004,0,0.127687338085188,0,0.659431438650969,1.9212405156506,0,1.11673199600552,1.12552522006336,1.22238598221448,0.589257170947335,0.854230084794618,0.186399445825301,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0,0,0,0.173485326766136,0,0,0.301445281105245,0,0,0,0,0,0,0,0,0,0,0.209446706813455,0,0,0,0,0.149790639404823,0.457500602818626,0.879580464790051,0.695297280769106,0.255715457330331,0,0.648965052271031,0,0,0,0,0,0,0.180062129805349,0,0.0680364991513279,0,0.0937017245597288,0.258703370739016,0,0,0,0.219195732427575,0,0,0,0,0,0,0,0,0,0.180062061461015,0.23674473558521,0,0,0,0,0.116765342367169,0,0,0,0,0,0,0,0.92614151141356,0,0,0,0,0.128867461322093,0,0,0,0,0.164698954724011,0,0,0,0,0,0,0,0,1.1270773567308,0,0,0.0701358198903186,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.162964976442026,0,0,0,0,0,0,0,0,0,0,0.144649058581512,1.50791283939272,0,0,0,0,0.35163505977661,0,0.252470927204373,0,0,0,0,0,0,0,0.292255857911312,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.356497378384721,0,0,0,0,0,0.129358683782755,0.214337035031592,0,0,0,0.304464949114599,0,0,0,0,0,0,0,0,0,0.370850604021019,0,0,0.185194527369712,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129614973291793,0.621339313086926,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102710957164827,0,0,0,0,0,0,0,0,0,0.0962118416403295,0,0,0,0,0,0,0,0,0,0,0,0.460325236507177,0.572895513439397,0.171853182343688,0.685082519770642,0,0,0,0.453142408984205,0,0.415149390336707,0,0,0,0,0,0,0.412070114477788,0,0,0,0.188626341386076,0.0936415074698824,0.0640251524048693,0.114870937911227,0,0,0,0,0,0,0.354951612318675,0.238436189947321,0.145346416632329,0.188218760830661,0,0.548783918618318,0,0.271608227691724,0,0.118635018124174,0,0,0.154936841185966,0,0.499621155875892,0.233931608445408,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0.171217968225505,0,0,0,0,0,0,0,0,0,0,0.0992909512008853,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202316460859598,1.5869729378161,0,0,0,0,0,0,0,0,0.207379224616955,0.675029691658453,0.420649922702764,0.285650984403804,0.662605622854841,0.489963196859816,0.958454710182364,1.83843757322004,0,0.127687338085188,0,0.659431438650969,1.9212405156506,0,1.11673199600552,1.12552522006336,1.22238598221448,0.589257170947335,0.854230084794618,0.186399445825301,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0,0,0,0.173485326766136,0,0,0.301445281105245,0,0,0,0,0,0,0,0,0,0,0.209446706813455,0,0,0,0,0.149790639404823,0.457500602818626,0.879580464790051,0.695297280769106,0.255715457330331,0,0.648965052271031,0,0,0,0,0,0,0.180062129805349,0,0.0680364991513279,0,0.0937017245597288,0.258703370739016,0,0,0,0.219195732427575,0,0,0,0,0,0,0,0,0,0.180062061461015,0.23674473558521,0,0,0,0,0.116765342367169,0,0,0,0,0,0,0,0.92614151141356,0,0,0,0,0.128867461322093,0,0,0,0,0.164698954724011,0,0,0,0,0,0,0,0,1.1270773567308,0,0,0.0701358198903186,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.162964976442026,0,0,0,0,0,0,0,0,0,0,0.144649058581512,1.50791283939272,0,0,0,0,0.35163505977661,0,0.252470927204373,0,0,0,0,0,0,0,0.292255857911312,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.356497378384721,0,0,0,0,0,0.129358683782755,0.214337035031592,0,0,0,0.304464949114599,0,0,0,0,0,0,0,0,0,0.370850604021019,0,0,0.185194527369712,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129614973291793,0.621339313086926,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102710957164827,0,0,0,0,0,0,0,0,0,0.0962118416403295,0,0,0,0,0,0,0,0,0,0,0,0.460325236507177,0.572895513439397,0.171853182343688,0.685082519770642,0,0,0,0.453142408984205,0,0.415149390336707,0,0,0,0,0,0,0.412070114477788,0,0,0,0.188626341386076,0.0936415074698824,0.0640251524048693,0.114870937911227,0,0,0,0,0,0,0.354951612318675,0.238436189947321,0.145346416632329,0.188218760830661,0,0.548783918618318,0,0.271608227691724,0,0.118635018124174,0,0,0.154936841185966,0,0.499621155875892,0.233931608445408,0,0,0,0 | ||
|short_description=p@chr3:95023652..95023663,- | |||
}} | }} |
Latest revision as of 07:58, 4 August 2015
Short description: | p@chr3:95023652..95023663, - |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr3:95023652..95023663, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron of the substantia nigra | 1.27e-32 | 3 |
CNS neuron (sensu Vertebrata) | 3.03e-17 | 23 |
neuroblast (sensu Vertebrata) | 3.03e-17 | 23 |
neuron | 4.66e-12 | 33 |
neuronal stem cell | 4.66e-12 | 33 |
neuroblast | 4.66e-12 | 33 |
electrically signaling cell | 4.66e-12 | 33 |
electrically responsive cell | 3.26e-10 | 39 |
electrically active cell | 3.26e-10 | 39 |
neural cell | 2.88e-09 | 43 |
ectodermal cell | 4.68e-09 | 44 |
neurectodermal cell | 4.68e-09 | 44 |
bone marrow macrophage | 8.63e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
substantia nigra | 1.27e-32 | 3 |
telencephalic nucleus | 1.27e-32 | 3 |
midbrain nucleus | 1.27e-32 | 3 |
neural nucleus | 1.27e-32 | 3 |
nucleus of brain | 1.27e-32 | 3 |
regional part of midbrain | 1.09e-24 | 4 |
midbrain | 1.09e-24 | 4 |
presumptive midbrain | 1.09e-24 | 4 |
midbrain neural tube | 1.09e-24 | 4 |
basal ganglion | 4.15e-22 | 8 |
nuclear complex of neuraxis | 4.15e-22 | 8 |
aggregate regional part of brain | 4.15e-22 | 8 |
collection of basal ganglia | 4.15e-22 | 8 |
cerebral subcortex | 4.15e-22 | 8 |
brain grey matter | 1.16e-09 | 29 |
regional part of telencephalon | 1.16e-09 | 29 |
telencephalon | 1.16e-09 | 29 |
gray matter | 2.88e-08 | 34 |
regional part of forebrain | 3.17e-07 | 39 |
forebrain | 3.17e-07 | 39 |
future forebrain | 3.17e-07 | 39 |
anterior neural tube | 4.78e-07 | 40 |