FFCP PHASE1:Hg19::chr3:149535022..149535031,+: Difference between revisions
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=11342 | |EntrezGene=11342 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10057 | |HGNC=10057 | ||
|TSSclassifier=strong | |||
|UniProt=C9J8T4 | |UniProt=C9J8T4 | ||
|association_with_transcript=0bp_to_ENST00000466795_5end | |||
|cluster_id=chr3:149535022..149535031,+ | |||
|coexpression_cluster_id=C0 | |||
|description=CAGE_peak_14_at_RNF13_5end | |||
|id=chr3:149535022..149535031,+ | |||
|ontology_enrichment_celltype=CL:0000766!1.28e-94!76;CL:0002057!1.03e-93!42;CL:0002194!8.84e-88!63;CL:0000576!8.84e-88!63;CL:0000040!8.84e-88!63;CL:0000559!8.84e-88!63;CL:0000860!1.24e-86!45;CL:0002009!1.10e-84!65;CL:0000839!1.05e-77!70;CL:0000557!1.99e-76!71;CL:0000763!1.77e-59!112;CL:0000049!1.77e-59!112;CL:0000738!3.69e-58!140;CL:0002087!4.82e-54!119;CL:0002031!1.96e-45!124;CL:0000037!2.54e-44!172;CL:0000566!2.54e-44!172;CL:0002032!6.42e-42!165;CL:0000837!6.42e-42!165;CL:0000988!5.41e-41!182;CL:0002393!1.07e-15!9;CL:0002397!1.07e-15!9;CL:0000094!8.27e-15!8;CL:0000134!1.18e-13!358;CL:0002320!4.33e-13!365;CL:0000219!4.18e-11!390;CL:0000081!1.91e-10!11;CL:0000048!9.22e-09!430;CL:0000723!1.97e-08!436;CL:0000034!5.22e-08!444;CL:0000767!8.93e-08!3;CL:0000875!1.03e-07!3;CL:0002396!1.03e-07!3;CL:0000842!4.04e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000860;3.15e-91;33!CL:0002057;3.15e-91;33!CL:0000473;5.83e-75;39!CL:0000234;5.83e-75;39!CL:0000576;1.30e-42;48!CL:0000766;3.14e-33;69!CL:0000763;2.33e-18;100!CL:0000771;4.14e-12;2!CL:0002087;1.44e-11;104!CL:0000094;3.10e-11;8!CL:0000738;1.57e-10;136!CL:0000775;3.02e-08;3!CL:0000081;3.35e-08;11!CL:0000219;2.48e-07;193 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,1.43e-80,48;CL:0000234,1.43e-80,48;CL:0000860,1.58e-79,42;CL:0002057,1.58e-79,42;CL:0000766,7.18e-78,72;CL:0002194,2.70e-73,59;CL:0000576,2.70e-73,59;CL:0000040,2.70e-73,59;CL:0000559,2.70e-73,59;CL:0002009,9.50e-71,61;CL:0000839,4.79e-65,66;CL:0000557,5.25e-64,67;CL:0000763,3.51e-50,108;CL:0000049,3.51e-50,108;CL:0000738,1.09e-38,136;CL:0002087,3.78e-35,115;CL:0002031,1.86e-33,120;CL:0002032,8.91e-32,161;CL:0000837,8.91e-32,161;CL:0000037,3.31e-30,168;CL:0000988,2.28e-28,177;CL:0000771,3.92e-12,2;CL:0000094,2.78e-11,8;CL:0000134,4.39e-11,354;CL:0002320,9.57e-11,361;CL:0000219,1.50e-09,386;CL:0000775,2.70e-08,3;CL:0000081,3.10e-08,11;CL:0000048,4.34e-08,427;CL:0000723,6.91e-08,433;CL:0000034,1.26e-07,441 | |||
|ontology_enrichment_development_v019=CL:0002057;3.20e-62;42!CL:0000049;1.76e-14;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!4.20e-71!102;UBERON:0003061!4.20e-71!102;UBERON:0002371!2.43e-66!80;UBERON:0002193!2.12e-63!112;UBERON:0001474!8.86e-61!86;UBERON:0004765!9.56e-50!101;UBERON:0001434!9.56e-50!101;UBERON:0002405!9.48e-46!115;UBERON:0003081!8.08e-28!216;UBERON:0002204!9.98e-25!167;UBERON:0002384!2.55e-12!375;UBERON:0000178!6.52e-07!15;UBERON:0000179!6.52e-07!15;UBERON:0000463!6.52e-07!15 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,7.34e-56,76;UBERON:0002390,4.13e-52,98;UBERON:0003061,4.13e-52,98;UBERON:0001474,2.07e-51,82;UBERON:0002193,8.78e-47,108;UBERON:0004765,2.18e-46,90;UBERON:0002405,1.01e-44,93;UBERON:0001434,3.17e-41,100;UBERON:0002204,1.82e-22,167;UBERON:0003081,3.60e-22,203;UBERON:0000926,4.18e-12,315;UBERON:0004120,4.18e-12,315;UBERON:0006603,4.18e-12,315;UBERON:0002384,2.77e-10,371 | |||
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|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393364276848904,0.383829398097213,0.619264493264304,0,0,0,0,0,0,0.553995408531877,0,0.217010870715852,0.223915474239924,0.32389366601898,0,0.581592955118259,0.377875943688809,0.727752183563449,2.09186133215116,3.28934310417461,4.64559556342655,5.46615545412086,3.33008918487831,9.45928919554341,9.99762474136194,5.80936215225443,2.70852973188684,1.12945403725563,1.91034305040492,2.69668181334102,3.97909060082173,3.20929027076094,4.47535988059329,1.64925650093358,1.99463657621632,0.426224750532694,3.77272010217159,2.8369261234557,0.622822248995575,3.01498398308092,2.60741459210101,6.73285418585862,1.81619850790011,6.62899744777616,4.43047342417238,0.845021145247767,0.425208599930087,0.419317291016752,0.22465726229299,0.300353785683013,0.16072558669708,0.570025487482497,0.79566670879636,0.182664153764634,0,0,0,0.426730222566507,0,0,0,0,0.569212969109448,0,0,0,0,0,0,0,0,0,0,0,0,0,0.294605907474837,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150575119077773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,0.0654895377488563,0,0,1.29818957461873,1.0447784237956,0.531831842075461,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,3.87780264148325,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0.134831308160164,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.72351904261178,0.468008530278475,0.148631162288728,0,0,0,0,0.290633938513962,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2162378064119,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.49801404789436,0,2.90090859405225,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0.215714200818617,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,0,1.52927441428475,0,0,0.822724546172388,1.29694662238543,2.16012574895246,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.994147647766298,0,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213574825135389,0,0,0,0,0,0,0,0,0.306345576763462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.227662191351298,0.266107110487916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0939839179798536,0.0644578879735772,0,0,0,0,0,0,0.143339583151451,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103432995861895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p14@RNF13 | |||
}} | }} |
Latest revision as of 22:38, 15 September 2015
Short description: | p14@RNF13 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_14_at_RNF13_5end |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | 0bp_to_ENST00000466795_5end |
EntrezGene: | RNF13 |
HGNC: | 10057 |
UniProt: | C9J8T4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 1.43e-80 | 48 |
phagocyte | 1.43e-80 | 48 |
classical monocyte | 1.58e-79 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.58e-79 | 42 |
myeloid leukocyte | 7.18e-78 | 72 |
monopoietic cell | 2.70e-73 | 59 |
monocyte | 2.70e-73 | 59 |
monoblast | 2.70e-73 | 59 |
promonocyte | 2.70e-73 | 59 |
macrophage dendritic cell progenitor | 9.50e-71 | 61 |
myeloid lineage restricted progenitor cell | 4.79e-65 | 66 |
granulocyte monocyte progenitor cell | 5.25e-64 | 67 |
myeloid cell | 3.51e-50 | 108 |
common myeloid progenitor | 3.51e-50 | 108 |
leukocyte | 1.09e-38 | 136 |
nongranular leukocyte | 3.78e-35 | 115 |
hematopoietic lineage restricted progenitor cell | 1.86e-33 | 120 |
hematopoietic oligopotent progenitor cell | 8.91e-32 | 161 |
hematopoietic multipotent progenitor cell | 8.91e-32 | 161 |
hematopoietic stem cell | 3.31e-30 | 168 |
hematopoietic cell | 2.28e-28 | 177 |
eosinophil | 3.92e-12 | 2 |
granulocyte | 2.78e-11 | 8 |
mesenchymal cell | 4.39e-11 | 354 |
connective tissue cell | 9.57e-11 | 361 |
motile cell | 1.50e-09 | 386 |
neutrophil | 2.70e-08 | 3 |
blood cell | 3.10e-08 | 11 |
multi fate stem cell | 4.34e-08 | 427 |
somatic stem cell | 6.91e-08 | 433 |
stem cell | 1.26e-07 | 441 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 7.34e-56 | 76 |
hematopoietic system | 4.13e-52 | 98 |
blood island | 4.13e-52 | 98 |
bone element | 2.07e-51 | 82 |
hemolymphoid system | 8.78e-47 | 108 |
skeletal element | 2.18e-46 | 90 |
immune system | 1.01e-44 | 93 |
skeletal system | 3.17e-41 | 100 |
musculoskeletal system | 1.82e-22 | 167 |
lateral plate mesoderm | 3.60e-22 | 203 |
mesoderm | 4.18e-12 | 315 |
mesoderm-derived structure | 4.18e-12 | 315 |
presumptive mesoderm | 4.18e-12 | 315 |
connective tissue | 2.77e-10 | 371 |