FFCP PHASE1:Hg19::chr20:36531379..36531393,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=128434 | |EntrezGene=128434 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16096 | |HGNC=16096 | ||
|TSSclassifier=strong | |||
|UniProt=F2Z3I3,Q96N03 | |UniProt=F2Z3I3,Q96N03 | ||
|association_with_transcript=-105bp_to_ENST00000373458,NM_080607,uc002xhk.3_5end | |association_with_transcript=-105bp_to_ENST00000373458,NM_080607,uc002xhk.3_5end | ||
|cluster_id=chr20:36531379..36531393,+ | |||
|coexpression_cluster_id=C2617 | |coexpression_cluster_id=C2617 | ||
|description=CAGE_peak_4_at_VSTM2L_5end | |description=CAGE_peak_4_at_VSTM2L_5end | ||
|id=chr20:36531379..36531393,+ | |id=chr20:36531379..36531393,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000064;2.51e-09;3!CL:0000067;2.51e-09;3!CL:0005012;2.51e-09;3!CL:0002304;2.51e-09;3!CL:0002603;3.68e-09;3!CL:0000349;9.05e-08;19!CL:0002536;4.81e-07;2!CL:0002368;9.39e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000064,2.86e-09,3;CL:0000067,2.86e-09,3;CL:0005012,2.86e-09,3;CL:0002304,2.86e-09,3;CL:0002603,4.91e-09,3;CL:0000349,1.20e-07,19;CL:0002536,4.76e-07,2;CL:0002368,8.04e-07,13 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019=UBERON:0000488;2.28e-11;4!UBERON:0002037;5.56e-11;6!UBERON:0000305;6.16e-10;7!UBERON:0005631;2.35e-09;10!UBERON:0000158;2.35e-09;10!UBERON:0001778;2.51e-09;3!UBERON:0001775;2.51e-09;3!UBERON:0007625;2.56e-08;11!UBERON:0002203;1.47e-07;6!UBERON:0001768;1.47e-07;6!UBERON:0002200;1.47e-07;6!UBERON:0002680;3.47e-07;9!UBERON:0001895;3.47e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000488,2.09e-11,4;UBERON:0005631,6.79e-11,14;UBERON:0000158,6.79e-11,14;UBERON:0002037,7.62e-11,6;UBERON:0006215,7.62e-11,6;UBERON:0004121,1.03e-10,171;UBERON:0000924,1.03e-10,171;UBERON:0006601,1.03e-10,171;UBERON:0010371,1.55e-10,104;UBERON:0000305,9.94e-10,7;UBERON:0002346,1.39e-09,86;UBERON:0001778,2.86e-09,3;UBERON:0001775,2.86e-09,3;UBERON:0003075,3.18e-09,82;UBERON:0007284,3.18e-09,82;UBERON:0004871,1.86e-08,8;UBERON:0007625,2.16e-08,11;UBERON:0005085,6.55e-08,31;UBERON:0001048,9.73e-08,160;UBERON:0002203,1.39e-07,6;UBERON:0001768,1.39e-07,6;UBERON:0002200,1.39e-07,6;UBERON:0002680,4.25e-07,9;UBERON:0001895,4.25e-07,9;UBERON:0010092,4.25e-07,9 | |||
|phase1_expression=0.181678379270557,0.428201047781966,0.140954404095971,0,0,0,0,0,0,1.96587149201207,9.76921635161399,6.77168253603534,8.44054330331051,0,0,0.672325146451775,0,1.46062018077475,0,2.21617904538218,3.06001036866379,5.32873026512749,0.286235987131057,0.136874425072884,0.125542639594803,0,0,0,0,0,0,0,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111410456885174,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.11964896641424,3.1042115644759,5.88493064143945,0.261958150995425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.3082821564276,0,0.886413581652058,0,0,0,0.560677600142307,0,0.49333509683432,0.311211035399766,0,0,0.756787138224657,0,0,0,0.570471821544449,0,0.352303495931295,0.323745888736263,0.561803226808994,0,0,0,0,0,0.910161361938026,0,0,0.125118519871964,0,0,0,0,0.113432183160021,0,0,0.211931901159562,0,0,0.257640540045629,0.18611685633159,0,0.0974370051611986,0,0,0,0,0,0,0.193260853163297,0,0.286804595389004,0,0.132529768321485,0,0.207322110030741,0,0,1.56449532329816,0,0,1.85747171212792,3.60939740834793,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,1.47008711385542,0,0.982827216677626,0.590789906681404,0,0.614942192715568,1.54411029268673,0.219500570817251,0,0,0.185176890317059,0,0,1.44331342025273,0.231860809950154,3.99189560401794,0,0,0,0,0,0,0,0,0,0.16798212819886,0.141775097242386,0.895585227028483,1.16253575405585,0.383382679165211,0,0,0,0.144119953416961,0.50496973370552,0,0,0,3.4214489204541,0,0,0,0.112131084345361,0.87192013766656,0.07333828582095,0,3.57656445851882,0,0,1.04007436911366,0.257207374262142,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0,0.716243852959582,0,0,0,0,0.254094624222463,2.60279707715243,0,0.335032530668698,0,0,0,0,0,0,0.271265023699736,0,0.178428988797162,0.157702415033935,0,0,0,0,0,0,0,0.391602314925481,2.05886054286514,0,0,0,0.606255142892519,1.66435439510497,2.41912234663744,0.248107807818777,0,0,0,0,0.321707842287215,0,0,0.177561725313127,0,0,0,0,0,0.184161977871793,0.114814448164607,0,0.262248829918848,0.451199612907412,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309123034943167,0,0,1.14853107599234,0,0,0,0,0,0,0.214840489736547,0.290033387828457,0.170453254832202,0.178064071293475,2.31398881505369,0.768760269460425,2.80747967488085,1.31505115112215,0,0,0.6970372701606,0,0,0,0.18532421910392,0.143124886741991,0,0,0.762520775695299,0.511795582622668,0,0,0,0.719489830333259,0.54907405947211,0.235624804691373,0,1.58510321173008,0.421258456238981,0,0,0,0,0.282810863907425,0,0,0,0.876901770507525,0.578775534266688,0,0,0,0,0,0.196498082026242,0,0,0,0,0,0.349934720244983,0.577332676353072,0.670302275535787,2.17781969722645,0.376575203107117,2.58303223602738,0,0.886860307073351,1.37834040124176,0,0,0,0,0,0,0,0,0.534120355637366,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1605880751037,0.201799707191048,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.10367830158997,0,3.07160702099232,0,0.140669416410513,0,0,0,0.19924798825107,0,4.28285671352269,0,0,0,0.0898683511473268,0.179021174675609,0,0,0,0,0.969332746095218,0.185536196323703,21.9575177801314,0,0,0,0,14.7467117169804,0,0,0,0,0,0.241192877250816,1.52581736317083,0.110579259931225,1.18219047581419,0.658156191461918,0,0,0.0769502585037971,1.25336261431701,0,0,0.54323685961004,0.638002319463839,0.183195186803725,1.06606955203727,0,0,0,0,0,0,0,0,0,0,0,0,0,0.265372693510018,0,0,0.247127877893006,0.104421949505455,0.067401132980677,0,1.1713222286267,0,0,0.242780379534093,6.70793484843964,0,1.53036380815245,0.126373159256976,0.300646838828985,0,0,0,0,0,0,0,0,0,0.0870592065804026,0.873633341210151,0,0,0,0,0.678923115418936,2.64768380074501,0,0,0,0.696418755514666,0,1.44285876452761,7.04394882639863,0,0,0,3.94668495082519,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,2.51354161145029,0,0.717873024576814,1.59743200399193,1.71690419254628,3.12440040418622,2.01550417460179,0,0,0,0,0,0.0984274815147488,0,0.795229689809303,0.544813624446302,0,0,0,0.449947783103001,0.77380195455795,0.668245123238271,0,0.236417121897595,0.0524545881349981,0,0,0,3.57347663186684,0.662091970365432,0,0,0,0.326587360109409,0,0,0.170388021785422,0,0.146552233678082,0,0.775697738169303,0.26446520348538,0.342173675768659,0.704815022316672,2.34932307648928,0.943225830597996,0.414239055347196,0,1.38328142328561,0,0,0,0,0,0,0,0,0.244052529803926,0.1251909307065,0,0,0.683060432355218,0,0.499921631848426,0,0.285465333544967,0,0,0,0,0,0,0.378806010550178,0,0,0,0,0,0,0,0,0,0,0,0.521745061811734,0,0,0,0,0,0,0.796191777397232,1.20008329398946,0,0,0,0,0.857766365499703,0,0,0.231522474323834,0,0,0.308801447160972,0,0,0,0.168942440653073,0,0,0,0.276516872303462,0.194860308839388,0.265729680626726,0,0.327609848846413,0,0,0.59996218756479,0,0,0,0,0,0.622077260032973,0.383683113910955,0,0,0.109209638192014,0.848662649770126,0.425149840203366,2.35477952092104,0,0,0,0,0,0.918736432059601,0.385375350578757,0,0,0.205116364240755,38.8190412181446,1.037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| ||
|short_description=p4@VSTM2L | |short_description=p4@VSTM2L | ||
}} | }} |
Latest revision as of 02:15, 16 September 2015
Short description: | p4@VSTM2L |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_VSTM2L_5end |
Coexpression cluster: | C2617_brain_occipital_Alveolar_parietal_hippocampus_temporal_left |
Association with transcript: | -105bp_to_ENST00000373458, NM_080607, uc002xhk.3_5end |
EntrezGene: | VSTM2L |
HGNC: | 16096 |
UniProt: | F2Z3I3Q96N03 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ciliated cell | 2.86e-09 | 3 |
ciliated epithelial cell | 2.86e-09 | 3 |
multi-ciliated epithelial cell | 2.86e-09 | 3 |
non-pigmented ciliary epithelial cell | 2.86e-09 | 3 |
astrocyte of the cerebellum | 4.91e-09 | 3 |
extraembryonic cell | 1.20e-07 | 19 |
amniotic epithelial cell | 4.76e-07 | 2 |
respiratory epithelial cell | 8.04e-07 | 13 |
Ontology term | p-value | n |
---|---|---|
atypical epithelium | 2.09e-11 | 4 |
extraembryonic membrane | 6.79e-11 | 14 |
membranous layer | 6.79e-11 | 14 |
cerebellum | 7.62e-11 | 6 |
rhombic lip | 7.62e-11 | 6 |
ectoderm-derived structure | 1.03e-10 | 171 |
ectoderm | 1.03e-10 | 171 |
presumptive ectoderm | 1.03e-10 | 171 |
ecto-epithelium | 1.55e-10 | 104 |
amnion | 9.94e-10 | 7 |
neurectoderm | 1.39e-09 | 86 |
ciliary epithelium | 2.86e-09 | 3 |
ciliary body | 2.86e-09 | 3 |
neural plate | 3.18e-09 | 82 |
presumptive neural plate | 3.18e-09 | 82 |
somatic layer of lateral plate mesoderm | 1.86e-08 | 8 |
pigment epithelium of eye | 2.16e-08 | 11 |
ectodermal placode | 6.55e-08 | 31 |
primordium | 9.73e-08 | 160 |
vasculature of eye | 1.39e-07 | 6 |
uvea | 1.39e-07 | 6 |
vasculature of head | 1.39e-07 | 6 |
regional part of metencephalon | 4.25e-07 | 9 |
metencephalon | 4.25e-07 | 9 |
future metencephalon | 4.25e-07 | 9 |