FFCP PHASE1:Hg19::chr2:238323007..238323038,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr2:238323007..238323038,-
|short_description=p3@COL6A3
|description=CAGE_peak_3_at_COL6A3_5end
|association_with_transcript=0bp_to_ENST00000295550_5end
|Entr...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1293 | |EntrezGene=1293 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2213 | |HGNC=2213 | ||
|TSSclassifier=strong | |||
|UniProt=P12111 | |UniProt=P12111 | ||
|association_with_transcript=0bp_to_ENST00000295550_5end | |||
|cluster_id=chr2:238323007..238323038,- | |||
|coexpression_cluster_id=C332 | |||
|description=CAGE_peak_3_at_COL6A3_5end | |||
|id=chr2:238323007..238323038,- | |||
|ontology_enrichment_celltype=CL:0000055!2.28e-41!180;CL:0000057!3.99e-30!75;CL:0000183!2.57e-18!59;CL:0000680!3.36e-18!57;CL:0000056!3.36e-18!57;CL:0000355!3.36e-18!57;CL:0000187!6.71e-18!54;CL:0000393!1.79e-14!60;CL:0000211!1.79e-14!60;CL:0000048!9.23e-14!430;CL:0002620!2.86e-13!23;CL:0000723!1.23e-12!436;CL:0000192!1.39e-12!42;CL:0000514!1.39e-12!42;CL:0000034!3.14e-11!444;CL:0000359!1.98e-08!32;CL:0002334!4.42e-07!12;CL:0002570!7.23e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0002620;1.59e-14;23!CL:0000057;8.88e-14;73!CL:0000134;5.46e-12;55!CL:0000723;9.12e-12;61!CL:0000187;1.42e-11;55!CL:0000048;1.34e-10;58!CL:0002320;3.28e-10;188!CL:0000192;1.55e-09;43!CL:0000393;4.39e-09;61!CL:0000211;4.39e-09;61!CL:0000034;3.16e-08;69!CL:0000359;4.07e-08;32!CL:0002334;1.24e-07;12!CL:0002570;2.12e-07;8!CL:0002494;3.09e-07;16 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,3.10e-34,76;CL:0000680,8.18e-20,58;CL:0000056,8.18e-20,58;CL:0000355,8.18e-20,58;CL:0000187,1.79e-19,55;CL:0000048,2.95e-19,427;CL:0000723,4.55e-18,433;CL:0000034,1.48e-16,441;CL:0000393,1.14e-15,61;CL:0000211,1.14e-15,61;CL:0002620,1.83e-14,23;CL:0000192,1.23e-13,43;CL:0000514,1.23e-13,43;CL:0002320,1.27e-08,361;CL:0000359,1.38e-08,32;CL:0002334,1.20e-07,12;CL:0000134,1.52e-07,354;CL:0002570,2.06e-07,8;CL:0002494,3.51e-07,16 | |||
|ontology_enrichment_development_v019=CL:0000355;1.37e-11;58!CL:0000514;1.55e-09;43 | |||
|ontology_enrichment_disease=DOID:2394!4.30e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;9.28e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,9.24e-08,14 | |||
|ontology_enrichment_uberon=UBERON:0000914!8.11e-24!83;UBERON:0002329!8.11e-24!83;UBERON:0003077!8.11e-24!83;UBERON:0003059!8.11e-24!83;UBERON:0007282!8.11e-24!83;UBERON:0009618!8.11e-24!83;UBERON:0007285!8.11e-24!83;UBERON:0004290!4.72e-23!70;UBERON:0002385!1.19e-19!63;UBERON:0001015!1.19e-19!63;UBERON:0000383!1.19e-19!63;UBERON:0001134!4.65e-19!61;UBERON:0002036!4.65e-19!61;UBERON:0003082!4.65e-19!61;UBERON:0000486!5.16e-18!82;UBERON:0005256!1.26e-16!143;UBERON:0002100!4.62e-12!216;UBERON:0003102!1.12e-11!95;UBERON:0000475!1.20e-11!365;UBERON:0002199!2.66e-11!45;UBERON:0002416!2.66e-11!45;UBERON:0002097!2.32e-09!40;UBERON:0004872!5.69e-09!84;UBERON:0007100!7.69e-09!27;UBERON:0003104!1.68e-08!238;UBERON:0009142!1.68e-08!238;UBERON:0001013!2.49e-08!14;UBERON:0000948!3.30e-08!24;UBERON:0005498!3.30e-08!24;UBERON:0004140!3.30e-08!24;UBERON:0009881!3.30e-08!24;UBERON:0004141!3.30e-08!24;UBERON:0003084!3.30e-08!24;UBERON:0007005!3.30e-08!24;UBERON:0004139!3.30e-08!24;UBERON:0004291!3.30e-08!24;UBERON:0000481!1.84e-07!347;UBERON:0000479!3.45e-07!787;UBERON:0000468!8.49e-07!659 | |||
|ontology_enrichment_uberon_v019=UBERON:0002385;1.78e-12;31!UBERON:0001015;1.78e-12;31!UBERON:0000383;1.78e-12;31!UBERON:0002384;8.76e-11;198!UBERON:0007100;2.83e-09;25!UBERON:0001013;5.02e-09;14!UBERON:0002097;7.53e-09;41!UBERON:0002199;1.18e-08;46!UBERON:0002416;1.18e-08;46!UBERON:0000948;1.52e-08;22!UBERON:0003102;5.53e-08;50!UBERON:0002204;1.73e-07;70!UBERON:0001134;2.74e-07;16!UBERON:0002036;2.74e-07;16!UBERON:0001135;5.23e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002329,3.66e-25,71;UBERON:0003059,3.66e-25,71;UBERON:0007282,3.66e-25,71;UBERON:0004290,3.66e-25,71;UBERON:0009618,3.66e-25,71;UBERON:0007524,1.71e-24,73;UBERON:0003077,1.88e-24,72;UBERON:0007285,1.88e-24,72;UBERON:0007503,3.79e-23,78;UBERON:0002385,2.03e-21,64;UBERON:0001015,2.03e-21,64;UBERON:0000383,2.03e-21,64;UBERON:0001134,9.11e-21,62;UBERON:0002036,9.11e-21,62;UBERON:0003082,9.11e-21,62;UBERON:0000486,3.06e-19,83;UBERON:0005256,5.03e-19,122;UBERON:0003104,8.04e-17,160;UBERON:0009142,8.04e-17,160;UBERON:0002199,2.04e-13,46;UBERON:0002416,2.04e-13,46;UBERON:0003102,8.24e-13,99;UBERON:0000926,1.37e-11,315;UBERON:0004120,1.37e-11,315;UBERON:0006603,1.37e-11,315;UBERON:0002097,3.09e-11,41;UBERON:0002100,1.03e-10,199;UBERON:0000490,5.20e-10,148;UBERON:0007100,1.39e-09,27;UBERON:0004872,4.22e-09,83;UBERON:0002384,4.66e-09,371;UBERON:0001013,5.06e-09,14;UBERON:0000948,6.89e-09,24;UBERON:0005498,6.89e-09,24;UBERON:0004140,6.89e-09,24;UBERON:0009881,6.89e-09,24;UBERON:0004141,6.89e-09,24;UBERON:0003084,6.89e-09,24;UBERON:0007005,6.89e-09,24;UBERON:0004139,6.89e-09,24;UBERON:0004291,6.89e-09,24;UBERON:0000479,4.87e-08,773;UBERON:0001135,4.75e-07,15 | |||
|phase1_expression=20.3479784783023,22.0523539607713,6.3429481843187,5.00366491765652,5.81049422755474,2.61701557230111,10.1319951267324,13.2661173419635,4.70134130759709,11.7952289520724,0,6.11635841964482,3.9565046734268,7.4259811776028,6.2965501388304,8.74022690387308,10.2458069764076,2.92124036154949,9.27072317701963,0.861847406537515,2.85600967741954,0.940364164434263,0.286235987131057,0.136874425072884,0.87879847716362,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,39.0090986102339,6.03630773733273,5.37022759742827,5.06014813338393,12.0321098552613,4.92478164466801,33.4020097761462,14.5990461090791,0.0945348171640679,0,0.175669571386252,5.6975897841505,0,0,0,0,0,0,0,0,0,1.72046919021225,0,0,0,0,0,0,2.13459757612026,0.33472061276467,0,0,0.488124115096339,0,0,0,0,0,0,0,0,0,0,0,19.8788780678127,10.5103324681601,17.3456026865317,61.3830368402461,13.4773985235376,4.48542080113846,6.4049397437823,3.7000132262574,15.2493407345885,10.1033004052266,6.70193802765181,19.9791804491309,29.9611480729599,10.3101430006871,13.1107232268735,8.55707732316674,7.02408798593465,7.04606991862589,8.7411389958791,8.56749920883716,26.9483506056459,13.757443538918,21.595088265735,11.8800285728205,9.64341024186372,40.0470999252732,22.9957805381196,11.6151918628306,8.63317787116553,17.4550392755035,11.8523957637826,11.0335606487647,6.91095070970345,5.44474479168101,90.5917660228753,31.606493545148,22.4647815229136,80.4244137506198,32.4615467101083,57.4538404301753,21.5895553344644,60.0843742778908,26.8926134244908,64.3706124322492,26.6024207076245,2.58633690910099,65.321765023057,15.8180794217395,19.8385893003271,0,0,0,0,0,0,0,0,0,61.0153176086282,29.5890831568727,23.4829366299217,12.0735661288315,12.271951188383,0,0,0,0,0,0,0,0,0,0,11.2193419042757,10.7009242946164,10.2906097969879,0,0,0.590789906681404,0,0,2.74508496477641,0,0,0,0,14.6613737389646,16.6389565644733,0,0,2.93521735589554,0,0,0,0,0,0,0,0,0,0.16798212819886,0,0,0,0,0,0,0.414656231081544,0,0.37872730027914,0.380987365753014,0,0,1.71072446022705,3.496134751913,0,0,13.1193368684072,7.41132117016576,11.5874491597101,12.6686281442622,71.5312891703765,32.966807349684,26.3278735419022,27.0419335969552,20.0621751924471,1.41849132023278,22.1130408583362,21.0177650677477,23.8753506372235,30.4598924608884,37.1339250094858,31.274491489344,19.0068449504023,0,0,0.099972991182057,0,0,0,4.31324739884849,3.44585807502342,1.42636905040718,8.10775317338444,2.4657158706046,1.25342674267927,0,0,0,0,0.508189248444927,1.30139853857622,0,0.167516265334349,0,0,0,0,7.72956397830581,1.50051156317903,4.34024037919577,6.23912584592421,7.49401752948079,4.88877486605197,9.37131319941706,6.01892199455438,4.5481500811197,3.10419213877515,11.9560607736379,8.11224341583494,14.0751455438294,9.20265440074881,5.49029478097369,0,0,0,0,3.32870879020994,0.907170879989041,6.4508030032882,34.8358679363902,15.7169652882521,6.66323576129645,10.2341449813341,18.8199087738021,7.42090332224955,29.6082612101099,16.5132404541208,14.7007609264718,20.2509227381612,16.8505048766941,0,0,0,36.1665511718511,22.5793048328329,7.21184282276833,0,0.308061348417659,0,0,0.316654886678627,0,0,1.51141141271498,0,8.94123243894714,6.52196706011309,0,0,0,0,0,0,0,0.650756789328606,4.73988653579522,0,0,2.87132768998086,1.30012049207304,12.8547143875328,12.5671933779759,24.0315842698845,24.867595305633,11.9917818061542,56.2882083109754,29.0033387828457,19.6021243057032,12.197388883603,0,0,0,0,1.85938219718914,59.1847212041603,11.1525963225696,8.00887308457831,6.38767236380426,10.4391959049009,5.93037501132544,1.71749864090389,11.16475108079,3.16379424718726,6.1001662055624,5.62975140884935,16.261681545289,15.5919591483709,5.49464048139461,12.9508169459987,21.1393512896762,19.3212339846926,4.65019707618627,3.17020642346017,7.58265221230166,10.2403085208814,2.43713489631284,2.11300293513511,21.8399858252777,26.584221207298,6.78048699721457,12.6814029015609,3.3171948762061,0.876901770507525,10.4179596168004,10.4943160327461,6.69604243976923,4.64735247149625,4.7888252430481,7.88762437122283,5.69844437876103,4.9933947207375,9.22378766583554,4.43326034125095,2.96365403663912,9.48682934414288,8.39843328587959,0.0962221127255121,0,0,4.89547764039252,0,0,0.443430153536676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,20.2181287395214,0,0.222886768554957,0,0.23874448473769,0,0,0,0,0,0,0,3.78571177677032,5.52567831062295,0,0,0,9.33118762985422,0,0,0,16.6707355526418,0,6.66821940867821,0,0.185536196323703,0,0,0,25.3749851402178,0,0,0,0,0,0.520874984799877,0,0,0,0.110579259931225,0,0.658156191461918,0,0,15.0822506667442,0,0,1.34636466614658,0,3.82801391678303,19.0522994275874,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0,0,5.97157158647103,8.75729888583058,3.66618086960175,0,0,0,0.134802265961354,4.01288823649394,0,0,0,0.242780379534093,8.2862724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| ||
|short_description=p3@COL6A3 | |||
}} | }} |
Latest revision as of 03:50, 16 September 2015
Short description: | p3@COL6A3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_COL6A3_5end |
Coexpression cluster: | C332_Fibroblast_Smooth_Mesenchymal_mesenchymal_Chondrocyte_Skeletal_Pericytes |
Association with transcript: | 0bp_to_ENST00000295550_5end |
EntrezGene: | COL6A3 |
HGNC: | 2213 |
UniProt: | P12111 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 3.10e-34 | 76 |
muscle precursor cell | 8.18e-20 | 58 |
myoblast | 8.18e-20 | 58 |
multi-potent skeletal muscle stem cell | 8.18e-20 | 58 |
muscle cell | 1.79e-19 | 55 |
multi fate stem cell | 2.95e-19 | 427 |
somatic stem cell | 4.55e-18 | 433 |
stem cell | 1.48e-16 | 441 |
electrically responsive cell | 1.14e-15 | 61 |
electrically active cell | 1.14e-15 | 61 |
skin fibroblast | 1.83e-14 | 23 |
smooth muscle cell | 1.23e-13 | 43 |
smooth muscle myoblast | 1.23e-13 | 43 |
connective tissue cell | 1.27e-08 | 361 |
vascular associated smooth muscle cell | 1.38e-08 | 32 |
preadipocyte | 1.20e-07 | 12 |
mesenchymal cell | 1.52e-07 | 354 |
mesenchymal stem cell of adipose | 2.06e-07 | 8 |
cardiocyte | 3.51e-07 | 16 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 9.24e-08 | 14 |