FFCP PHASE1:Hg19::chr16:56691650..56691719,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr16:56691650..56691719,+ to FFCP PHASE1:Hg19::chr16:56691650..56691719,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=4494 | |EntrezGene=4494 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7398 | |HGNC=7398 | ||
|TSSclassifier=strong | |||
|UniProt=P04733,A8MWH4 | |UniProt=P04733,A8MWH4 | ||
|association_with_transcript=-135bp_to_ENST00000334350,ENST00000394501,NM_005949,uc002ejt.2_5end | |||
|cluster_id=chr16:56691650..56691719,+ | |||
|description=CAGE_peak_5_at_MT1F_5end | |||
|id=chr16:56691650..56691719,+ | |||
|ontology_enrichment_celltype=CL:0000066!1.17e-24!254;CL:0002076!1.04e-12!43;CL:0000223!2.06e-12!59;CL:0002368!3.39e-07!13 | |||
|ontology_enrichment_celltype_v019=CL:0002076;3.20e-10;42!CL:0002202;2.02e-09;9!CL:0002632;2.02e-09;9!CL:0002368;1.78e-08;13!CL:1000507;7.90e-08;10!CL:1000494;7.90e-08;10!CL:1000497;1.81e-07;17!CL:0002518;1.81e-07;17 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,2.83e-25,253;CL:0002076,5.35e-14,42;CL:0000223,2.26e-12,58;CL:0002202,3.75e-09,9;CL:0002632,3.75e-09,9;CL:0002368,2.66e-08,13;CL:1000507,9.20e-08,10;CL:1000494,9.20e-08,10;CL:1000497,2.07e-07,17;CL:0002518,2.07e-07,17 | |||
|ontology_enrichment_development_v019=UBERON:0008947;7.67e-09;29!CL:0000223;2.06e-08;58!UBERON:0006595;4.43e-07;86 | |||
|ontology_enrichment_disease=DOID:305!1.49e-19!106;DOID:0050687!4.31e-13!143;DOID:1749!2.35e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:1749;5.71e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.42e-18,106;DOID:0050687,1.82e-12,143;DOID:1749,7.70e-08,14 | |||
|ontology_enrichment_uberon=UBERON:0004119!1.16e-19!169;UBERON:0000925!1.16e-19!169;UBERON:0006595!1.16e-19!169;UBERON:0000062!1.12e-18!511;UBERON:0001007!1.10e-17!155;UBERON:0001555!1.10e-17!155;UBERON:0007026!1.10e-17!155;UBERON:0004921!2.71e-17!129;UBERON:0004185!2.71e-17!129;UBERON:0000077!1.86e-14!130;UBERON:0007023!5.46e-14!115;UBERON:0000064!3.78e-13!219;UBERON:0001004!7.02e-13!72;UBERON:0001041!5.88e-12!98;UBERON:0005911!3.19e-11!82;UBERON:0000065!4.78e-11!53;UBERON:0008947!2.02e-10!38;UBERON:0003258!2.02e-10!38;UBERON:0000466!7.89e-10!126;UBERON:0000072!1.62e-09!46;UBERON:0000464!1.63e-08!104;UBERON:0000481!1.94e-08!347;UBERON:0005177!2.66e-08!107;UBERON:0005153!2.73e-08!37;UBERON:0000063!8.49e-08!97;UBERON:0001049!1.82e-07!57;UBERON:0005068!1.82e-07!57;UBERON:0006241!1.82e-07!57;UBERON:0007135!1.82e-07!57;UBERON:0005157!1.93e-07!51;UBERON:0001008!2.07e-07!45;UBERON:0006554!3.83e-07!44 | |||
|ontology_enrichment_uberon_v019=UBERON:0000072;3.32e-10;37!UBERON:0000065;2.52e-09;44!UBERON:0001737;2.07e-08;9!UBERON:0001557;2.07e-08;9!UBERON:0004807;3.63e-08;22!UBERON:0004211;7.90e-08;10!UBERON:0009773;7.90e-08;10!UBERON:0001231;7.90e-08;10!UBERON:0004810;7.90e-08;10!UBERON:0005911;9.55e-08;36!UBERON:0006554;2.79e-07;30!UBERON:0001008;2.79e-07;30 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,1.58e-21,160;UBERON:0000925,1.58e-21,160;UBERON:0006595,1.58e-21,160;UBERON:0001007,1.62e-20,145;UBERON:0001555,1.62e-20,145;UBERON:0007026,1.62e-20,145;UBERON:0004921,5.26e-20,118;UBERON:0011216,2.33e-14,223;UBERON:0001041,6.20e-14,87;UBERON:0008947,1.05e-12,38;UBERON:0003258,1.05e-12,38;UBERON:0001004,2.98e-12,74;UBERON:0005177,5.36e-11,101;UBERON:0000072,5.77e-11,47;UBERON:0005911,5.88e-11,82;UBERON:0000065,7.10e-11,54;UBERON:0005157,1.77e-10,47;UBERON:0005153,4.39e-10,37;UBERON:0001008,1.75e-09,48;UBERON:0009569,2.33e-09,112;UBERON:0006554,4.40e-09,47;UBERON:0001737,1.04e-08,9;UBERON:0005423,2.75e-08,581;UBERON:0004810,9.20e-08,10;UBERON:0000922,2.10e-07,592;UBERON:0007023,5.95e-07,114;UBERON:0005178,6.13e-07,34;UBERON:0002224,6.13e-07,34;UBERON:0001048,6.79e-07,160 | |||
|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,1.22866968250754,8.37361401566913,3.9319446983431,4.22027165165526,0,0,0,0,0,0,0,0.612002073732759,0,0,0,0,0,0.0821005894499457,0,0,0,0.464448369948228,5.51652734687356,3.0120591877825,1.10926203050036,0,0,0,0,0,0.651032612147555,0.223915474239924,0.32389366601898,0.77272670290256,0.726991193897824,0,0.242584061187816,0.232429036905685,0,0,0,0,0,0,0.645484683583826,1.35426486594342,0,0.272906150057846,0.224723484445085,0,0,0,0.329851300186716,0,0.426224750532694,0.290209238628584,0,0,0.251248665256743,0.521482918420201,0,0.605399502633369,0.368277635987565,0.316462387440884,0,0,0,1.12328631146495,0.600707571366025,0.16072558669708,0.570025487482497,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196709770113833,0,0.205601498999509,0,0,0.473447805734733,0,0,1.76763544484902,0.664601683750863,0.270803863765016,0.128091319725675,0,0.164437904603676,0.276350017785848,0.289803085735052,0.14828656316206,0.535081656179426,0,0.113309342697566,0.383220493601921,0,0.253019692019503,0.318565414324097,0.651083453856419,0,0.451725357233318,0,0,0.710331756132051,0.821127996921047,0.201606743224732,1.33720097891754,0.289648807765598,0,0,0,0,0,0,0,0,0.0945348171640679,0,0.351339142772504,0.458426764241994,8.37879163072847,2.22470665670658,0.324547393654683,0,0.531831842075461,0,0,0,0,0,0,0,0,0.275118041940067,0,0,0,0,0,0,0,0,0,0,0.22452937262617,0,0,0,0.183201743930407,0,0,6.54141078213801,0,0,0,0,0.354668382198357,0,0,0.49333509683432,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122834317311768,0,0,0,0,0,0,0,0,0,0,0.150238058906597,0,0,0.213557388818567,0,0,0,0,0.18611685633159,0,0,0,0,0,0,0,0,3.28543450377605,2.72746120590835,2.00763216772303,0.731842236777572,0.397589304964456,0.929551542956147,0.518305275076852,0.504641701751257,0.36497735907583,0,0,0,0,0,3.07597680103594,2.69735504124963,1.68707720918437,3.30881918197182,2.83243277320128,1.89816495288877,4.04493924480493,3.53198637225623,2.69323009862473,0,0,0.4115740113314,0,3.80265104465493,9.82827216677626,12.4065880403095,0,4.18160691046586,1.02940686179115,1.20725313949488,5.62008766288098,1.70899253099772,2.40729957412177,0,1.03993478527958,0,0,0,0.288732895522148,0,0.380508304469197,4.74122638775565,5.15091697256924,1.23108503043699,1.17002132569619,1.78357394746474,2.81201501960331,2.01578553838631,1.98485136139341,3.85101647622248,4.65014301622339,3.4504441124869,0,0.352193736052904,0.621984346622316,1.15295962733569,0.6312121671319,0.253991577168676,0.763976851116555,2.34434894420094,0,0.205654985406647,0,0,0.448524337381443,0,0.07333828582095,0,0,0,0,0,0.257207374262142,0,0,0,0,0,0,0,1.58390374586686,0.301439377059586,0,0.299918973546171,0,0,6.32501818449095,0,0,0,0,0,0.179060963239896,0.336255431980582,0,0.646882724578552,0,0,0,0,0.502548796003046,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320182673410333,0.909382714338778,0,2.11673205330776,0,0,0,0,0,0.160853921143607,1.48418066444991,0,0,0.0821271560138091,0,0,2.53804844142407,3.80962293576241,2.4861867012692,0,0,0,2.25599806453706,2.69553679865452,3.92174884588428,2.92278449306521,2.32213583564327,0,0.340187410553031,0.215915916102139,0,0.541892875087706,1.00337954770971,7.39141191830611,4.98645605357235,4.02974558499921,0,0,0,0.328014645699706,0.325378394664303,1.23649213977267,0,0,0.574265537996172,2.60024098414608,0,0,0,0,0,0,0,0,0,2.97512847649761,0.960950336825531,0.510450849978337,1.2138933702666,0,0,0,0,0,0,0,0,0.372158369359667,0,0,0,0,0,0,0,0,0.117812402345686,0,0,0,0,0,0,0.136499911407986,0.141405431953713,1.13008116620243,0,0,0.438450885253763,0,0,0,0,0,0,0,0,0.354761064070598,0,0,0,0,2.21310859268678,5.3624182042863,8.71127878890581,1.03558180854457,7.31859133541091,0,7.98174276366016,9.41865940848534,0,0,1.13929437434833,0,0,0,0,0,0,0,4.16568367167754,0,0.577076851905779,0,0,0,0,0,0,0,0.456469358066384,0,0,0,0,0.403599414382095,0.425846237690326,10.9921710321845,2.15068535015921,1.11838053946208,2.0021897005429,1.9538809540204,0,0,0,0,0,2.61996756571508,1.75809815126273,0,0.222886768554957,3.97790605528978,3.34242278632766,3.56357616999166,0.921482106297696,3.97659059106519,1.1253553312841,0.111308705022906,0,0.422250816255987,0,0.552567831062295,0,0.511343412510774,0,0,4.13394415277704,0.179021174675609,0,0.493217028184668,0,0,1.93866549219044,1.66982576691332,0,7.55240507147176,4.89775999978696,0.724999575434793,4.21035758656349,10.6786533122962,1.65471377237555,2.06846023944879,0,0,0.885741385813839,1.32656082487949,9.15490417902499,1.54810963903714,2.65992857058193,2.63262476584767,0.32681539055697,4.46155981691531,0.538651809526579,0.113942055847001,0.23056390438806,0.628303510868405,0.217294743844016,3.82801391678303,0.549585560411174,1.06606955203727,0,0,0.498635045700469,0,0,0,0,0.158936578980379,0.632994193584081,2.61172493054636,0.848118428603645,0.649165919226273,11.9431431729421,9.73033209536731,9.16545217400438,0,0,0,0.539209063845416,0,0.702793337176017,0,2.15231080825299,0,2.76209081994573,2.41981432097328,0,0.379119477770928,0.450970258243478,0.2073763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| |phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,1.22866968250754,8.37361401566913,3.9319446983431,4.22027165165526,0,0,0,0,0,0,0,0.612002073732759,0,0,0,0,0,0.0821005894499457,0,0,0,0.464448369948228,5.51652734687356,3.0120591877825,1.10926203050036,0,0,0,0,0,0.651032612147555,0.223915474239924,0.32389366601898,0.77272670290256,0.726991193897824,0,0.242584061187816,0.232429036905685,0,0,0,0,0,0,0.645484683583826,1.35426486594342,0,0.272906150057846,0.224723484445085,0,0,0,0.329851300186716,0,0.426224750532694,0.290209238628584,0,0,0.251248665256743,0.521482918420201,0,0.605399502633369,0.368277635987565,0.316462387440884,0,0,0,1.12328631146495,0.600707571366025,0.16072558669708,0.570025487482497,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196709770113833,0,0.205601498999509,0,0,0.473447805734733,0,0,1.76763544484902,0.664601683750863,0.270803863765016,0.128091319725675,0,0.164437904603676,0.276350017785848,0.289803085735052,0.14828656316206,0.535081656179426,0,0.113309342697566,0.383220493601921,0,0.253019692019503,0.318565414324097,0.651083453856419,0,0.451725357233318,0,0,0.710331756132051,0.821127996921047,0.201606743224732,1.33720097891754,0.289648807765598,0,0,0,0,0,0,0,0,0.0945348171640679,0,0.351339142772504,0.458426764241994,8.37879163072847,2.22470665670658,0.324547393654683,0,0.531831842075461,0,0,0,0,0,0,0,0,0.275118041940067,0,0,0,0,0,0,0,0,0,0,0.22452937262617,0,0,0,0.183201743930407,0,0,6.54141078213801,0,0,0,0,0.354668382198357,0,0,0.49333509683432,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122834317311768,0,0,0,0,0,0,0,0,0,0,0.150238058906597,0,0,0.213557388818567,0,0,0,0,0.18611685633159,0,0,0,0,0,0,0,0,3.28543450377605,2.72746120590835,2.00763216772303,0.731842236777572,0.397589304964456,0.929551542956147,0.518305275076852,0.504641701751257,0.36497735907583,0,0,0,0,0,3.07597680103594,2.69735504124963,1.68707720918437,3.30881918197182,2.83243277320128,1.89816495288877,4.04493924480493,3.53198637225623,2.69323009862473,0,0,0.4115740113314,0,3.80265104465493,9.82827216677626,12.4065880403095,0,4.18160691046586,1.02940686179115,1.20725313949488,5.62008766288098,1.70899253099772,2.40729957412177,0,1.03993478527958,0,0,0,0.288732895522148,0,0.380508304469197,4.74122638775565,5.15091697256924,1.23108503043699,1.17002132569619,1.78357394746474,2.81201501960331,2.01578553838631,1.98485136139341,3.85101647622248,4.65014301622339,3.4504441124869,0,0.352193736052904,0.621984346622316,1.15295962733569,0.6312121671319,0.253991577168676,0.763976851116555,2.34434894420094,0,0.205654985406647,0,0,0.448524337381443,0,0.07333828582095,0,0,0,0,0,0.257207374262142,0,0,0,0,0,0,0,1.58390374586686,0.301439377059586,0,0.299918973546171,0,0,6.32501818449095,0,0,0,0,0,0.179060963239896,0.336255431980582,0,0.646882724578552,0,0,0,0,0.502548796003046,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320182673410333,0.909382714338778,0,2.11673205330776,0,0,0,0,0,0.160853921143607,1.48418066444991,0,0,0.0821271560138091,0,0,2.53804844142407,3.80962293576241,2.4861867012692,0,0,0,2.25599806453706,2.69553679865452,3.92174884588428,2.92278449306521,2.32213583564327,0,0.340187410553031,0.215915916102139,0,0.541892875087706,1.00337954770971,7.39141191830611,4.98645605357235,4.02974558499921,0,0,0,0.328014645699706,0.325378394664303,1.23649213977267,0,0,0.574265537996172,2.60024098414608,0,0,0,0,0,0,0,0,0,2.97512847649761,0.960950336825531,0.510450849978337,1.2138933702666,0,0,0,0,0,0,0,0,0.372158369359667,0,0,0,0,0,0,0,0,0.117812402345686,0,0,0,0,0,0,0.136499911407986,0.141405431953713,1.13008116620243,0,0,0.438450885253763,0,0,0,0,0,0,0,0,0.354761064070598,0,0,0,0,2.21310859268678,5.3624182042863,8.71127878890581,1.03558180854457,7.31859133541091,0,7.98174276366016,9.41865940848534,0,0,1.13929437434833,0,0,0,0,0,0,0,4.16568367167754,0,0.577076851905779,0,0,0,0,0,0,0,0.456469358066384,0,0,0,0,0.403599414382095,0.425846237690326,10.9921710321845,2.15068535015921,1.11838053946208,2.0021897005429,1.9538809540204,0,0,0,0,0,2.61996756571508,1.75809815126273,0,0.222886768554957,3.97790605528978,3.34242278632766,3.56357616999166,0.921482106297696,3.97659059106519,1.1253553312841,0.111308705022906,0,0.422250816255987,0,0.552567831062295,0,0.511343412510774,0,0,4.13394415277704,0.179021174675609,0,0.493217028184668,0,0,1.93866549219044,1.66982576691332,0,7.55240507147176,4.89775999978696,0.724999575434793,4.21035758656349,10.6786533122962,1.65471377237555,2.06846023944879,0,0,0.885741385813839,1.32656082487949,9.15490417902499,1.54810963903714,2.65992857058193,2.63262476584767,0.32681539055697,4.46155981691531,0.538651809526579,0.113942055847001,0.23056390438806,0.628303510868405,0.217294743844016,3.82801391678303,0.549585560411174,1.06606955203727,0,0,0.498635045700469,0,0,0,0,0.158936578980379,0.632994193584081,2.61172493054636,0.848118428603645,0.649165919226273,11.9431431729421,9.73033209536731,9.16545217400438,0,0,0,0.539209063845416,0,0.702793337176017,0,2.15231080825299,0,2.76209081994573,2.41981432097328,0,0.379119477770928,0.450970258243478,0.2073763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| ||
|short_description=p5@MT1F | |||
}} | }} |
Latest revision as of 02:11, 17 September 2015
Short description: | p5@MT1F |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_MT1F_5end |
Coexpression cluster: | NA |
Association with transcript: | -135bp_to_ENST00000334350, ENST00000394501, NM_005949, uc002ejt.2_5end |
EntrezGene: | MT1F |
HGNC: | 7398 |
UniProt: | P04733A8MWH4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 2.83e-25 | 253 |
endo-epithelial cell | 5.35e-14 | 42 |
endodermal cell | 2.26e-12 | 58 |
epithelial cell of tracheobronchial tree | 3.75e-09 | 9 |
epithelial cell of lower respiratory tract | 3.75e-09 | 9 |
respiratory epithelial cell | 2.66e-08 | 13 |
kidney tubule cell | 9.20e-08 | 10 |
nephron tubule epithelial cell | 9.20e-08 | 10 |
kidney cell | 2.07e-07 | 17 |
kidney epithelial cell | 2.07e-07 | 17 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 1.58e-21 | 160 |
endoderm | 1.58e-21 | 160 |
presumptive endoderm | 1.58e-21 | 160 |
digestive system | 1.62e-20 | 145 |
digestive tract | 1.62e-20 | 145 |
primitive gut | 1.62e-20 | 145 |
subdivision of digestive tract | 5.26e-20 | 118 |
organ system subdivision | 2.33e-14 | 223 |
foregut | 6.20e-14 | 87 |
respiratory primordium | 1.05e-12 | 38 |
endoderm of foregut | 1.05e-12 | 38 |
respiratory system | 2.98e-12 | 74 |
trunk region element | 5.36e-11 | 101 |
segment of respiratory tract | 5.77e-11 | 47 |
endo-epithelium | 5.88e-11 | 82 |
respiratory tract | 7.10e-11 | 54 |
epithelial fold | 1.77e-10 | 47 |
epithelial bud | 4.39e-10 | 37 |
renal system | 1.75e-09 | 48 |
subdivision of trunk | 2.33e-09 | 112 |
urinary system structure | 4.40e-09 | 47 |
larynx | 1.04e-08 | 9 |
developing anatomical structure | 2.75e-08 | 581 |
nephron tubule epithelium | 9.20e-08 | 10 |
embryo | 2.10e-07 | 592 |
adult organism | 5.95e-07 | 114 |
thoracic cavity element | 6.13e-07 | 34 |
thoracic cavity | 6.13e-07 | 34 |
primordium | 6.79e-07 | 160 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.42e-18 | 106 |
cell type cancer | 1.82e-12 | 143 |
squamous cell carcinoma | 7.70e-08 | 14 |