FFCP PHASE1:Hg19::chr17:71398188..71398201,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=54549 | |EntrezGene=54549 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=19308 | |HGNC=19308 | ||
|TSSclassifier=strong | |||
|UniProt=Q58EX2 | |UniProt=Q58EX2 | ||
|association_with_transcript=78bp_to_BC045763_5end | |association_with_transcript=78bp_to_BC045763_5end | ||
|cluster_id=chr17:71398188..71398201,- | |||
|coexpression_cluster_id=C1 | |||
|description=CAGE_peak_6_at_SDK2_5end | |description=CAGE_peak_6_at_SDK2_5end | ||
|id=chr17:71398188..71398201,- | |id=chr17:71398188..71398201,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000123;5.69e-21;2!CL:0000242;5.69e-21;2!CL:0000333;3.22e-09;5!CL:0000312;3.22e-09;5!CL:0000240;6.78e-08;6!CL:0000311;6.78e-08;6!CL:0000079;6.78e-08;6!CL:0000237;6.78e-08;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000242,4.66e-21,2;CL:0000312,2.97e-09,5;CL:0000240,6.34e-08,6;CL:0000311,6.34e-08,6;CL:0000079,6.34e-08,6;CL:0000237,6.34e-08,6;CL:0000036,6.34e-08,6;CL:0000357,6.34e-08,6;CL:0000114,6.34e-08,6 | |||
|ontology_enrichment_development_v019=UBERON:0009117;5.90e-17;10!UBERON:0005564;5.90e-17;10!CL:0000357;6.78e-08;6!CL:0000114;6.78e-08;6 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:169;6.78e-08;6 | |||
|ontology_enrichment_disease_v019_2=DOID:169,6.78e-08,6 | |||
|ontology_enrichment_uberon=UBERON:0001049!2.35e-34!57;UBERON:0005068!2.35e-34!57;UBERON:0006241!2.35e-34!57;UBERON:0007135!2.35e-34!57;UBERON:0002616!6.11e-30!59;UBERON:0000073!7.15e-29!94;UBERON:0001016!7.15e-29!94;UBERON:0007023!2.00e-27!115;UBERON:0005743!2.18e-27!86;UBERON:0000955!4.80e-27!69;UBERON:0006238!4.80e-27!69;UBERON:0001017!1.27e-26!82;UBERON:0002780!2.98e-26!41;UBERON:0001890!2.98e-26!41;UBERON:0006240!2.98e-26!41;UBERON:0003080!1.50e-25!42;UBERON:0003075!2.12e-25!86;UBERON:0007284!2.12e-25!86;UBERON:0001893!1.27e-24!34;UBERON:0002020!1.92e-24!34;UBERON:0003528!1.92e-24!34;UBERON:0002346!5.04e-24!90;UBERON:0001869!7.79e-23!32;UBERON:0002791!6.38e-22!33;UBERON:0003056!1.26e-18!61;UBERON:0002619!7.42e-17!22;UBERON:0000033!7.01e-16!123;UBERON:0001950!6.13e-15!20;UBERON:0000153!6.87e-15!129;UBERON:0007811!6.87e-15!129;UBERON:0004121!8.86e-15!169;UBERON:0000956!1.08e-14!25;UBERON:0000203!1.08e-14!25;UBERON:0000924!2.71e-14!173;UBERON:0006601!2.71e-14!173;UBERON:0002298!3.14e-13!8;UBERON:0000988!3.51e-13!3;UBERON:0002308!4.33e-12!9;UBERON:0000125!4.33e-12!9;UBERON:0000369!8.37e-11!4;UBERON:0002435!8.37e-11!4;UBERON:0000204!8.37e-11!4;UBERON:0010082!8.37e-11!4;UBERON:0000007!2.32e-10!2;UBERON:0003076!8.04e-10!15;UBERON:0003057!8.04e-10!15;UBERON:0002148!1.90e-09!2;UBERON:0009662!1.90e-09!2;UBERON:0001871!5.67e-09!7;UBERON:0004733!9.77e-09!12;UBERON:0002028!9.77e-09!12;UBERON:0007277!9.77e-09!12;UBERON:0000349!9.96e-09!5;UBERON:0000025!3.84e-08!194;UBERON:0002420!3.88e-08!9;UBERON:0007245!3.88e-08!9;UBERON:0010009!3.88e-08!9;UBERON:0010011!3.88e-08!9;UBERON:0000454!3.88e-08!9;UBERON:0004732!4.81e-08!13;UBERON:0000119!4.21e-07!312;UBERON:0005383!6.37e-07!3;UBERON:0005382!6.37e-07!3;UBERON:0001896!7.83e-07!3;UBERON:0005290!7.83e-07!3;UBERON:0010096!7.83e-07!3 | |ontology_enrichment_uberon=UBERON:0001049!2.35e-34!57;UBERON:0005068!2.35e-34!57;UBERON:0006241!2.35e-34!57;UBERON:0007135!2.35e-34!57;UBERON:0002616!6.11e-30!59;UBERON:0000073!7.15e-29!94;UBERON:0001016!7.15e-29!94;UBERON:0007023!2.00e-27!115;UBERON:0005743!2.18e-27!86;UBERON:0000955!4.80e-27!69;UBERON:0006238!4.80e-27!69;UBERON:0001017!1.27e-26!82;UBERON:0002780!2.98e-26!41;UBERON:0001890!2.98e-26!41;UBERON:0006240!2.98e-26!41;UBERON:0003080!1.50e-25!42;UBERON:0003075!2.12e-25!86;UBERON:0007284!2.12e-25!86;UBERON:0001893!1.27e-24!34;UBERON:0002020!1.92e-24!34;UBERON:0003528!1.92e-24!34;UBERON:0002346!5.04e-24!90;UBERON:0001869!7.79e-23!32;UBERON:0002791!6.38e-22!33;UBERON:0003056!1.26e-18!61;UBERON:0002619!7.42e-17!22;UBERON:0000033!7.01e-16!123;UBERON:0001950!6.13e-15!20;UBERON:0000153!6.87e-15!129;UBERON:0007811!6.87e-15!129;UBERON:0004121!8.86e-15!169;UBERON:0000956!1.08e-14!25;UBERON:0000203!1.08e-14!25;UBERON:0000924!2.71e-14!173;UBERON:0006601!2.71e-14!173;UBERON:0002298!3.14e-13!8;UBERON:0000988!3.51e-13!3;UBERON:0002308!4.33e-12!9;UBERON:0000125!4.33e-12!9;UBERON:0000369!8.37e-11!4;UBERON:0002435!8.37e-11!4;UBERON:0000204!8.37e-11!4;UBERON:0010082!8.37e-11!4;UBERON:0000007!2.32e-10!2;UBERON:0003076!8.04e-10!15;UBERON:0003057!8.04e-10!15;UBERON:0002148!1.90e-09!2;UBERON:0009662!1.90e-09!2;UBERON:0001871!5.67e-09!7;UBERON:0004733!9.77e-09!12;UBERON:0002028!9.77e-09!12;UBERON:0007277!9.77e-09!12;UBERON:0000349!9.96e-09!5;UBERON:0000025!3.84e-08!194;UBERON:0002420!3.88e-08!9;UBERON:0007245!3.88e-08!9;UBERON:0010009!3.88e-08!9;UBERON:0010011!3.88e-08!9;UBERON:0000454!3.88e-08!9;UBERON:0004732!4.81e-08!13;UBERON:0000119!4.21e-07!312;UBERON:0005383!6.37e-07!3;UBERON:0005382!6.37e-07!3;UBERON:0001896!7.83e-07!3;UBERON:0005290!7.83e-07!3;UBERON:0010096!7.83e-07!3 | ||
|ontology_enrichment_uberon_v019=UBERON:0000473;6.64e-21;8!UBERON:0003135;1.62e-15;11!UBERON:0000013;3.22e-09;5!UBERON:0002410;3.22e-09;5!UBERON:0000991;1.27e-08;21!UBERON:0003101;2.82e-08;22!UBERON:0000079;2.82e-08;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,6.64e-21,8;UBERON:0003135,1.62e-15,11;UBERON:0000013,3.22e-09,5;UBERON:0002410,3.22e-09,5;UBERON:0000991,1.27e-08,21;UBERON:0009196,1.27e-08,21;UBERON:0009117,1.27e-08,21;UBERON:0005564,1.27e-08,21;UBERON:0004176,2.82e-08,22;UBERON:0003101,2.82e-08,22;UBERON:0000079,2.82e-08,22 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0478326039817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131084345361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343143423810856,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.200506470303285,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179872457583315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144269212976445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.185536196323703,0,0,0,0,0,0,0,0,0,0,0,0.241192877250816,0,0,0,0,0,0,0,0,0,0,0.108647371922008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134802265961354,0,0,0,0,0,0,0,0.30607276163049,0.189559738885464,0.150323419414493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223171457441873,0.0671834724867263,0,0,0,0,0,0,0,0,0.272406812223151,0,0,0,0,0,0.0607495566580247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0.310482014706917,0,0,0,0,0,0,1.44921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.07824811396682,0.157265941855896,0,0,0,0,0,0,0,0,0,0,0.256916900385838,0,0,0.205116364240755,0,0.138314504928436,0.161475645631851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270150338473579,0,0,0.0634158101939068,0,0,0,0,0,0,0,0.606965604236632,0.227662191351298,0,0,0,0.0679697329768317,0,0,0,0,0.157115589916002,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102662806856247,0,0,0,0,0.118920090777569,0,0,0,0,0,0,0,0,0.196308467114945,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135982980381829,0,0,0,0,0,0,0,0,0,0,0,0,2.95536923051134,4.55539021265503,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.406896178315738,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0478326039817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131084345361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343143423810856,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.200506470303285,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179872457583315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144269212976445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.185536196323703,0,0,0,0,0,0,0,0,0,0,0,0.241192877250816,0,0,0,0,0,0,0,0,0,0,0.108647371922008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134802265961354,0,0,0,0,0,0,0,0.30607276163049,0.189559738885464,0.150323419414493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223171457441873,0.0671834724867263,0,0,0,0,0,0,0,0,0.272406812223151,0,0,0,0,0,0.0607495566580247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0.310482014706917,0,0,0,0,0,0,1.44921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.07824811396682,0.157265941855896,0,0,0,0,0,0,0,0,0,0,0.256916900385838,0,0,0.205116364240755,0,0.138314504928436,0.161475645631851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270150338473579,0,0,0.0634158101939068,0,0,0,0,0,0,0,0.606965604236632,0.227662191351298,0,0,0,0.0679697329768317,0,0,0,0,0.157115589916002,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102662806856247,0,0,0,0,0.118920090777569,0,0,0,0,0,0,0,0,0.196308467114945,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135982980381829,0,0,0,0,0,0,0,0,0,0,0,0,2.95536923051134,4.55539021265503,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.406896178315738,0,0,0 | ||
|short_description=p6@SDK2 | |short_description=p6@SDK2 | ||
}} | }} |
Latest revision as of 05:47, 17 September 2015
Short description: | p6@SDK2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_SDK2_5end |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | 78bp_to_BC045763_5end |
EntrezGene: | SDK2 |
HGNC: | 19308 |
UniProt: | Q58EX2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Merkel cell | 4.66e-21 | 2 |
keratinocyte | 2.97e-09 | 5 |
stratified squamous epithelial cell | 6.34e-08 | 6 |
keratin accumulating cell | 6.34e-08 | 6 |
stratified epithelial cell | 6.34e-08 | 6 |
keratinizing barrier epithelial cell | 6.34e-08 | 6 |
epithelial fate stem cell | 6.34e-08 | 6 |
stratified epithelial stem cell | 6.34e-08 | 6 |
surface ectodermal cell | 6.34e-08 | 6 |
Ontology term | p-value | n |
---|---|---|
testis | 6.64e-21 | 8 |
male reproductive organ | 1.62e-15 | 11 |
sympathetic nervous system | 3.22e-09 | 5 |
autonomic nervous system | 3.22e-09 | 5 |
gonad | 1.27e-08 | 21 |
indifferent external genitalia | 1.27e-08 | 21 |
indifferent gonad | 1.27e-08 | 21 |
gonad primordium | 1.27e-08 | 21 |
external genitalia | 2.82e-08 | 22 |
male organism | 2.82e-08 | 22 |
male reproductive system | 2.82e-08 | 22 |
Ontology term | p-value | n |
---|---|---|
neuroendocrine tumor | 6.78e-08 | 6 |