FFCP PHASE1:Hg19::chr5:179499007..179499018,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55819 | |EntrezGene=55819 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18280 | |HGNC=18280 | ||
|TSSclassifier=strong | |||
|UniProt=Q86XS8 | |UniProt=Q86XS8 | ||
|association_with_transcript=82bp_to_ENST00000261947_5end | |association_with_transcript=82bp_to_ENST00000261947_5end | ||
|cluster_id=chr5:179499007..179499018,- | |||
|description=CAGE_peak_5_at_RNF130_5end | |description=CAGE_peak_5_at_RNF130_5end | ||
|id=chr5:179499007..179499018,- | |id=chr5:179499007..179499018,- | ||
|ontology_enrichment_celltype=CL:0000763!4.54e-23!112;CL:0000049!4.54e-23!112;CL:0000766!5.63e-22!76;CL:0002194!1.97e-19!63;CL:0000576!1.97e-19!63;CL:0000040!1.97e-19!63;CL:0000559!1.97e-19!63;CL:0000557!4.85e-19!71;CL:0000839!1.97e-18!70;CL:0002009!9.92e-18!65;CL:0002057!8.40e-17!42;CL:0000860!3.55e-14!45;CL:0000988!1.96e-13!182;CL:0000037!2.93e-12!172;CL:0000566!2.93e-12!172;CL:0002032!6.08e-11!165;CL:0000837!6.08e-11!165;CL:0000738!2.81e-08!140;CL:0000219!2.32e-07!390;CL:0002087!8.29e-07!119 | |ontology_enrichment_celltype=CL:0000763!4.54e-23!112;CL:0000049!4.54e-23!112;CL:0000766!5.63e-22!76;CL:0002194!1.97e-19!63;CL:0000576!1.97e-19!63;CL:0000040!1.97e-19!63;CL:0000559!1.97e-19!63;CL:0000557!4.85e-19!71;CL:0000839!1.97e-18!70;CL:0002009!9.92e-18!65;CL:0002057!8.40e-17!42;CL:0000860!3.55e-14!45;CL:0000988!1.96e-13!182;CL:0000037!2.93e-12!172;CL:0000566!2.93e-12!172;CL:0002032!6.08e-11!165;CL:0000837!6.08e-11!165;CL:0000738!2.81e-08!140;CL:0000219!2.32e-07!390;CL:0002087!8.29e-07!119 | ||
|ontology_enrichment_celltype_v019=CL:0000473;3.38e-20;39!CL:0000234;3.38e-20;39!CL:0000576;9.79e-20;48!CL:0000860;5.17e-18;33!CL:0002057;5.17e-18;33!CL:0000766;1.80e-16;69!CL:0000763;2.57e-16;100!CL:0000235;6.31e-08;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000763,3.32e-42,108;CL:0000049,3.32e-42,108;CL:0000766,7.61e-39,72;CL:0002194,1.67e-36,59;CL:0000576,1.67e-36,59;CL:0000040,1.67e-36,59;CL:0000559,1.67e-36,59;CL:0000557,1.63e-35,67;CL:0002009,9.50e-35,61;CL:0000473,1.39e-34,48;CL:0000234,1.39e-34,48;CL:0000839,2.50e-34,66;CL:0000860,5.65e-28,42;CL:0002057,5.65e-28,42;CL:0000988,1.47e-26,177;CL:0000037,1.67e-25,168;CL:0002032,1.40e-23,161;CL:0000837,1.40e-23,161;CL:0000738,3.03e-17,136;CL:0002087,1.59e-14,115;CL:0002031,2.57e-14,120;CL:0002393,1.43e-09,9;CL:0002397,1.43e-09,9;CL:0000219,1.48e-09,386;CL:0002320,5.10e-09,361;CL:0000134,2.29e-08,354;CL:0000235,2.50e-08,6 | |||
|ontology_enrichment_development_v019=CL:0002057;5.27e-20;42!CL:0000049;1.55e-12;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:8692;6.18e-08;31 | |||
|ontology_enrichment_disease_v019_2=DOID:8692,1.29e-08,31;DOID:1240,2.86e-07,39 | |||
|ontology_enrichment_uberon=UBERON:0002371!1.88e-17!80;UBERON:0001474!9.48e-16!86;UBERON:0002405!3.72e-15!115;UBERON:0002193!1.53e-14!112;UBERON:0002390!1.79e-14!102;UBERON:0003061!1.79e-14!102;UBERON:0004765!1.11e-13!101;UBERON:0001434!1.11e-13!101;UBERON:0003081!9.52e-07!216 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,3.77e-32,76;UBERON:0001474,6.13e-30,82;UBERON:0004765,3.21e-28,90;UBERON:0002405,2.87e-25,93;UBERON:0002390,3.26e-25,98;UBERON:0003061,3.26e-25,98;UBERON:0001434,1.41e-24,100;UBERON:0002193,2.56e-22,108;UBERON:0003081,3.68e-11,203;UBERON:0002204,7.23e-11,167;UBERON:0002384,3.10e-09,371 | |||
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|phase1_expression=0.181678379270557,0.428201047781966,0.704772020479856,2.00146596706261,0.446961094427288,1.74467704820074,0,0,0.261185628199839,0.737201809504527,0,0.655324116390517,0.791300934685361,0.495065411840187,1.65698687863958,0.672325146451775,0,1.46062018077475,0,1.10808952269109,2.24400760368678,1.25381888591235,0.572471974262113,0.410623275218653,1.25542639594803,0,0,0,0.786728553697808,0.383829398097213,3.2511385896376,0,0,0,0,0,4.69760702935756,4.43196326825502,1.60435557976113,1.95309783644267,6.94137970143765,3.56283032620878,4.12120908214698,2.32637182047304,3.02300754951048,2.66842467306598,3.0215774797739,1.6446715520873,1.54853185447552,2.01384674625505,3.07392847834921,1.18241114944293,2.41321976515633,1.29096936716765,0,2.63539275359647,3.27487380069415,1.79778787556068,2.44867113896722,2.88836124368484,1.91801137739712,1.31940520074686,1.99463657621632,0.852449501065388,2.61188314765726,1.13477044938228,0,1.50749199154046,1.0429658368404,0.434377689410233,2.42159801053347,0.736555271975129,0.949387162322653,2.5350634357433,1.27562579979026,1.67726916406701,1.57260083605093,2.25265339262259,1.28580469357664,1.42506371870624,1.79025009479181,1.27864907635244,0,0,0.889509253863555,0,0,1.14950487990897,0,0.954053754535364,0.569212969109448,0.587237189370939,0,9.25199300053181,7.8471198817415,3.16060901730092,0,0.393010762749165,0.205601498999509,0,0.32592226663359,0.946895611469467,0,0,0.294605907474837,0,0,0,0,0,0,0,0.444859689486181,0,1.04535523804977,0,0,0,0,0.637130828648193,0.651083453856419,0,0.752875595388864,0.255973222308837,0,0.473554504088034,0,0,0,0.434473211648397,0,1.34140171940727,0.767175371061182,0.361439152384566,0.50133791063589,1.15877215168659,0.795285947051099,0.973269740605272,0.283604451492204,1.10864698731282,0.175669571386252,0.982343066232845,0.364295288292542,0,1.29818957461873,1.74129737299267,0.930705723632056,0.953962497221368,2.85997455390064,4.08603251462521,0.39752481473341,0,0.347140501607594,0.56530794192401,1.25849830862972,0.275118041940067,0.208994966536811,0.775250277507987,0.71153252537342,0,4.02829317109147,0.760272105718513,1.70843440283719,1.10298924103761,0.81014194788176,0.17859945656816,0.44905874525234,0.675668882899933,0,0,0.366403487860815,3.9534125230819,7.75560528296651,0,0,0.25326102332916,0.264818361626438,0.286836620748814,0.709336764396714,0,0,0.24666754841716,0.933633106199299,0.538842688278752,0.326923806226917,1.05950199351452,1.72852777344,0.468642863667593,0,1.1409436430889,0,0.939475989150119,0.161872944368132,0.702254033511242,0.204154171254893,0.491337269247072,0.103325781175765,0,0.247266929278557,0,0.718618141816238,0.336672227908132,0.375355559615893,0.554128230968366,0,0,1.35214253015937,0.453728732640084,0.358779271377724,0.427114777637135,0.423863802319124,0.600182192168805,0.412210116953756,0.772921620136887,0.37223371266318,0,0.292311015483596,0.252433774244115,0.644349290496095,0.484938170456436,0,0.806016785821122,0.339121184620975,0.193260853163297,0.272746120590835,0,0.243947412259191,0.132529768321485,0.348581828608555,1.0366105501537,0.252320850875628,0.36497735907583,0,0,0,0,0,0,0,0.482022059766964,0,0,0,0.134831308160164,0,0,2.95262181849859,0,1.6462960453256,2.94017422771084,1.26755034821831,0,0.590789906681404,0,0.122988438543114,0.343135620597051,0.109750285408626,1.1240175325762,0,0.0925884451585296,0,1.03993478527958,0,1.27523445472584,0.234817388471643,0.288732895522148,0.925971025153221,0.951270761172991,0.790204397959275,0.858486162094873,3.20082107913617,1.8720341211139,1.63494278517601,1.87467667973554,0.335964256397719,0,0.179117045405697,0,0,0,0.968532774145487,2.07328115540772,2.73827911492227,0.88369703398466,0.571481048629521,0.381988425558278,1.17217447210047,1.71072446022705,1.7480673759565,0.300343057843917,2.28661146104463,1.34557301214433,5.66748089483264,0.4400297149257,0,0,0.845302752556,0.797814349754612,1.04007436911366,0.257207374262142,0,0.266422179016099,0.142977993658148,1.08524321078289,0,0.325736184293735,0.355391948742546,0,0.301439377059586,0,0.099972991182057,9.72990245129524,3.01354254859276,4.21667878966063,0.958499421966331,2.29723871668228,0,0.144781306667579,0.205476322550383,0.537182889719687,0,0.591092280605782,0.431255149719035,0.256686072559497,0.76228387266739,1.30139853857622,0,1.00509759200609,0.637938751653163,3.74503511973591,0,1.24324654030811,0.858840442033979,0,0.813795071099207,0.415941723061614,0.356857977594324,0,0,0.300946099727719,0,2.0694614258501,0,0.184369168541703,0.173767228936166,1.56640925970192,3.0882908142977,0.82707210449155,1.07857100409308,0.74709290462411,0,0,0.604780586659361,0.496215615637554,0.306923946576125,0.561320188866147,0.256278298511402,1.02341449813341,0.160853921143607,0,0.462629081407967,0.355123450626254,0.328508624055237,0,0.348631135379878,0.120859449591622,0,0,0.114814448164607,0.182091168006717,1.04899531967539,0.451199612907412,0,0,1.46139224653261,0.316654886678627,0,1.19065593693561,0.215915916102139,0,0.54189287508770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| ||
|short_description=p5@RNF130 | |short_description=p5@RNF130 | ||
}} | }} |
Latest revision as of 10:12, 17 September 2015
Short description: | p5@RNF130 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_RNF130_5end |
Coexpression cluster: | NA |
Association with transcript: | 82bp_to_ENST00000261947_5end |
EntrezGene: | RNF130 |
HGNC: | 18280 |
UniProt: | Q86XS8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid cell | 3.32e-42 | 108 |
common myeloid progenitor | 3.32e-42 | 108 |
myeloid leukocyte | 7.61e-39 | 72 |
monopoietic cell | 1.67e-36 | 59 |
monocyte | 1.67e-36 | 59 |
monoblast | 1.67e-36 | 59 |
promonocyte | 1.67e-36 | 59 |
granulocyte monocyte progenitor cell | 1.63e-35 | 67 |
macrophage dendritic cell progenitor | 9.50e-35 | 61 |
defensive cell | 1.39e-34 | 48 |
phagocyte | 1.39e-34 | 48 |
myeloid lineage restricted progenitor cell | 2.50e-34 | 66 |
classical monocyte | 5.65e-28 | 42 |
CD14-positive, CD16-negative classical monocyte | 5.65e-28 | 42 |
hematopoietic cell | 1.47e-26 | 177 |
hematopoietic stem cell | 1.67e-25 | 168 |
hematopoietic oligopotent progenitor cell | 1.40e-23 | 161 |
hematopoietic multipotent progenitor cell | 1.40e-23 | 161 |
leukocyte | 3.03e-17 | 136 |
nongranular leukocyte | 1.59e-14 | 115 |
hematopoietic lineage restricted progenitor cell | 2.57e-14 | 120 |
intermediate monocyte | 1.43e-09 | 9 |
CD14-positive, CD16-positive monocyte | 1.43e-09 | 9 |
motile cell | 1.48e-09 | 386 |
connective tissue cell | 5.10e-09 | 361 |
mesenchymal cell | 2.29e-08 | 354 |
macrophage | 2.50e-08 | 6 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 3.77e-32 | 76 |
bone element | 6.13e-30 | 82 |
skeletal element | 3.21e-28 | 90 |
immune system | 2.87e-25 | 93 |
hematopoietic system | 3.26e-25 | 98 |
blood island | 3.26e-25 | 98 |
skeletal system | 1.41e-24 | 100 |
hemolymphoid system | 2.56e-22 | 108 |
lateral plate mesoderm | 3.68e-11 | 203 |
musculoskeletal system | 7.23e-11 | 167 |
connective tissue | 3.10e-09 | 371 |
Ontology term | p-value | n |
---|---|---|
myeloid leukemia | 1.29e-08 | 31 |
leukemia | 2.86e-07 | 39 |