FFCP PHASE1:Hg19::chr5:179757923..179757948,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9945 | |EntrezGene=9945 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4242 | |HGNC=4242 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000518185_5end | |association_with_transcript=0bp_to_ENST00000518185_5end | ||
|cluster_id=chr5:179757923..179757948,- | |||
|coexpression_cluster_id=C221 | |coexpression_cluster_id=C221 | ||
|description=CAGE_peak_3_at_GFPT2_5end | |description=CAGE_peak_3_at_GFPT2_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000077!1.91e-08!19 | |ontology_enrichment_celltype=CL:0000077!1.91e-08!19 | ||
|ontology_enrichment_celltype_v019=CL:0000054;2.00e-08;2!CL:0000137;2.00e-08;2!CL:0000092;2.00e-08;2!CL:0002262;2.57e-08;2!CL:1000398;2.57e-08;2 | |ontology_enrichment_celltype_v019=CL:0000054;2.00e-08;2!CL:0000137;2.00e-08;2!CL:0000092;2.00e-08;2!CL:0002262;2.57e-08;2!CL:1000398;2.57e-08;2 | ||
|ontology_enrichment_celltype_v019_2=CL:0000054,2.00e-08,2;CL:0000137,2.00e-08,2;CL:0000092,2.00e-08,2;CL:0002262,2.31e-08,2;CL:1000398,2.31e-08,2 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:3347;9.99e-16;1!DOID:0060085;1.54e-15;1!DOID:3165;1.54e-15;1!DOID:0060121;1.54e-15;1!DOID:2438;1.54e-15;1!DOID:4418;1.54e-15;1!DOID:3908;2.06e-12;5!DOID:201;1.73e-10;6!DOID:0060100;1.73e-10;6!DOID:3910;1.20e-08;2!DOID:200;2.00e-08;2!DOID:4305;2.00e-08;2!DOID:3905;2.72e-07;9 | |ontology_enrichment_disease_v019=DOID:3347;9.99e-16;1!DOID:0060085;1.54e-15;1!DOID:3165;1.54e-15;1!DOID:0060121;1.54e-15;1!DOID:2438;1.54e-15;1!DOID:4418;1.54e-15;1!DOID:3908;2.06e-12;5!DOID:201;1.73e-10;6!DOID:0060100;1.73e-10;6!DOID:3910;1.20e-08;2!DOID:200;2.00e-08;2!DOID:4305;2.00e-08;2!DOID:3905;2.72e-07;9 | ||
|ontology_enrichment_disease_v019_2=DOID:3347,9.99e-16,1;DOID:0060085,1.54e-15,1;DOID:3165,1.54e-15,1;DOID:0060121,1.54e-15,1;DOID:2438,1.54e-15,1;DOID:4418,1.54e-15,1;DOID:3908,2.12e-12,5;DOID:201,1.73e-10,6;DOID:0060100,1.73e-10,6;DOID:3910,1.20e-08,2;DOID:200,2.00e-08,2;DOID:4305,2.00e-08,2;DOID:3905,2.77e-07,9 | |||
|ontology_enrichment_uberon=UBERON:0004872!1.26e-07!84;UBERON:0004535!3.03e-07!110;UBERON:0001009!7.56e-07!113 | |ontology_enrichment_uberon=UBERON:0004872!1.26e-07!84;UBERON:0004535!3.03e-07!110;UBERON:0001009!7.56e-07!113 | ||
|ontology_enrichment_uberon_v019=UBERON:0001264;2.24e-23;10!UBERON:0001280;1.39e-19;3!UBERON:0004647;1.39e-19;3!UBERON:0001282;2.56e-15;1!UBERON:0009842;2.56e-15;1!UBERON:0003704;2.56e-15;1!UBERON:0001171;2.56e-15;1!UBERON:0001172;2.56e-15;1!UBERON:0002075;3.84e-13;18!UBERON:0000949;2.08e-09;43!UBERON:0004903;1.20e-08;2!UBERON:0002173;1.20e-08;2!UBERON:0002186;1.20e-08;2!UBERON:0001281;2.57e-08;2!UBERON:0003497;2.57e-08;2!UBERON:0003909;2.57e-08;2!UBERON:0003835;2.57e-08;2 | |ontology_enrichment_uberon_v019=UBERON:0001264;2.24e-23;10!UBERON:0001280;1.39e-19;3!UBERON:0004647;1.39e-19;3!UBERON:0001282;2.56e-15;1!UBERON:0009842;2.56e-15;1!UBERON:0003704;2.56e-15;1!UBERON:0001171;2.56e-15;1!UBERON:0001172;2.56e-15;1!UBERON:0002075;3.84e-13;18!UBERON:0000949;2.08e-09;43!UBERON:0004903;1.20e-08;2!UBERON:0002173;1.20e-08;2!UBERON:0002186;1.20e-08;2!UBERON:0001281;2.57e-08;2!UBERON:0003497;2.57e-08;2!UBERON:0003909;2.57e-08;2!UBERON:0003835;2.57e-08;2 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001264,2.24e-23,10;UBERON:0001280,1.53e-19,3;UBERON:0004647,1.53e-19,3;UBERON:0005171,1.53e-19,3;UBERON:0001282,3.66e-15,1;UBERON:0009842,3.66e-15,1;UBERON:0003704,3.66e-15,1;UBERON:0001171,3.66e-15,1;UBERON:0001172,3.66e-15,1;UBERON:0002075,3.85e-13,18;UBERON:0000949,3.67e-11,45;UBERON:0002394,2.90e-10,6;UBERON:0003928,2.90e-10,6;UBERON:0004903,1.20e-08,2;UBERON:0002173,1.20e-08,2;UBERON:0002186,1.20e-08,2;UBERON:0001281,2.31e-08,2;UBERON:0003497,2.31e-08,2;UBERON:0003909,2.31e-08,2;UBERON:0003835,2.31e-08,2;UBERON:0005177,2.49e-08,101;UBERON:0000058,2.65e-07,19;UBERON:0002294,3.90e-07,9;UBERON:0001173,3.90e-07,9;UBERON:0004912,3.90e-07,9 | |||
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| ||
|short_description=p3@GFPT2 | |short_description=p3@GFPT2 | ||
}} | }} |
Latest revision as of 10:27, 17 September 2015
Short description: | p3@GFPT2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_GFPT2_5end |
Coexpression cluster: | C221_alveolar_Osteoblast_Myoblast_mesenchymal_liposarcoma_Smooth_hepatocellular |
Association with transcript: | 0bp_to_ENST00000518185_5end |
EntrezGene: | GFPT2 |
HGNC: | 4242 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
bone matrix secreting cell | 2.00e-08 | 2 |
osteocyte | 2.00e-08 | 2 |
osteoclast | 2.00e-08 | 2 |
endothelial cell of sinusoid | 2.31e-08 | 2 |
endothelial cell of hepatic sinusoid | 2.31e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
pancreas | 2.24e-23 | 10 |
liver parenchyma | 1.53e-19 | 3 |
liver lobule | 1.53e-19 | 3 |
hepatic duct | 1.53e-19 | 3 |
intralobular bile duct | 3.66e-15 | 1 |
acinus | 3.66e-15 | 1 |
intrahepatic bile duct | 3.66e-15 | 1 |
portal lobule | 3.66e-15 | 1 |
hepatic acinus | 3.66e-15 | 1 |
viscus | 3.85e-13 | 18 |
endocrine system | 3.67e-11 | 45 |
bile duct | 2.90e-10 | 6 |
digestive system duct | 2.90e-10 | 6 |
bronchoalveolar duct junction | 1.20e-08 | 2 |
alveolar duct | 1.20e-08 | 2 |
bronchiole | 1.20e-08 | 2 |
hepatic sinusoid | 2.31e-08 | 2 |
abdomen blood vessel | 2.31e-08 | 2 |
sinusoid | 2.31e-08 | 2 |
abdominal segment blood vessel | 2.31e-08 | 2 |
trunk region element | 2.49e-08 | 101 |
duct | 2.65e-07 | 19 |
biliary system | 3.90e-07 | 9 |
biliary tree | 3.90e-07 | 9 |
biliary bud | 3.90e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
osteosarcoma | 9.99e-16 | 1 |
organ system benign neoplasm | 1.54e-15 | 1 |
skin benign neoplasm | 1.54e-15 | 1 |
integumentary system benign neoplasm | 1.54e-15 | 1 |
dermis tumor | 1.54e-15 | 1 |
cutaneous fibrous histiocytoma | 1.54e-15 | 1 |
non-small cell lung carcinoma | 2.12e-12 | 5 |
connective tissue cancer | 1.73e-10 | 6 |
musculoskeletal system cancer | 1.73e-10 | 6 |
lung adenocarcinoma | 1.20e-08 | 2 |
giant cell tumor | 2.00e-08 | 2 |
bone giant cell tumor | 2.00e-08 | 2 |
lung carcinoma | 2.77e-07 | 9 |