FFCP PHASE1:Hg19::chr1:156084491..156084510,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4000 | |EntrezGene=4000 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6636 | |HGNC=6636 | ||
|TSSclassifier=strong | |||
|UniProt=P02545,Q6UYC3 | |UniProt=P02545,Q6UYC3 | ||
|association_with_transcript=0bp_to_ENST00000368300,ENST00000469565,ENST00000470199,ENST00000478063,uc009wro.1_5end | |association_with_transcript=0bp_to_ENST00000368300,ENST00000469565,ENST00000470199,ENST00000478063,uc009wro.1_5end | ||
|cluster_id=chr1:156084491..156084510,+ | |||
|coexpression_cluster_id=C1839 | |coexpression_cluster_id=C1839 | ||
|description=CAGE_peak_1_at_LMNA_5end | |description=CAGE_peak_1_at_LMNA_5end | ||
|id=chr1:156084491..156084510,+ | |id=chr1:156084491..156084510,+ | ||
|ontology_enrichment_celltype=CL:0000055!3.01e-28!180;CL:0002371!5.30e-24!591;CL:0000144!3.60e-23!625;CL:0000548!6.37e-23!679;CL:0000004!6.37e-23!679;CL:0000255!6.37e-23!679;CL:0000012!1.38e-22!682;CL:0000057!3.25e-21!75;CL:0000222!9.60e-16!119;CL:0000220!8.02e-13!246;CL:0002321!3.61e-12!248;CL:0002620!4.99e-11!23;CL:0000183!1.69e-10!59;CL:0000063!2.30e-10!578;CL:0000003!7.67e-10!722;CL:0000680!1.47e-09!57;CL:0000056!1.47e-09!57;CL:0000355!1.47e-09!57;CL:0000187!2.63e-09!54;CL:0000192!1.75e-08!42;CL:0000514!1.75e-08!42;CL:0000723!2.32e-08!436;CL:0000048!3.62e-08!430;CL:0000034!3.31e-07!444;CL:0000393!9.22e-07!60;CL:0000211!9.22e-07!60 | |ontology_enrichment_celltype=CL:0000055!3.01e-28!180;CL:0002371!5.30e-24!591;CL:0000144!3.60e-23!625;CL:0000548!6.37e-23!679;CL:0000004!6.37e-23!679;CL:0000255!6.37e-23!679;CL:0000012!1.38e-22!682;CL:0000057!3.25e-21!75;CL:0000222!9.60e-16!119;CL:0000220!8.02e-13!246;CL:0002321!3.61e-12!248;CL:0002620!4.99e-11!23;CL:0000183!1.69e-10!59;CL:0000063!2.30e-10!578;CL:0000003!7.67e-10!722;CL:0000680!1.47e-09!57;CL:0000056!1.47e-09!57;CL:0000355!1.47e-09!57;CL:0000187!2.63e-09!54;CL:0000192!1.75e-08!42;CL:0000514!1.75e-08!42;CL:0000723!2.32e-08!436;CL:0000048!3.62e-08!430;CL:0000034!3.31e-07!444;CL:0000393!9.22e-07!60;CL:0000211!9.22e-07!60 | ||
|ontology_enrichment_celltype_v019=CL:0002620;5.00e-11;23!CL:0000057;1.30e-08;73!CL:0000192;7.11e-07;43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,6.38e-21,76;CL:0000222,2.21e-16,121;CL:0002321,1.14e-12,250;CL:0002620,4.99e-11,23;CL:0000680,6.29e-10,58;CL:0000056,6.29e-10,58;CL:0000355,6.29e-10,58;CL:0000187,1.12e-09,55;CL:0000192,7.29e-09,43;CL:0000514,7.29e-09,43;CL:0000723,1.86e-08,433;CL:0000048,2.92e-08,427;CL:0000034,2.72e-07,441;CL:0000393,4.44e-07,61;CL:0000211,4.44e-07,61 | |||
|ontology_enrichment_development_v019=CL:0000514;7.11e-07;43 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000926!2.73e-18!448;UBERON:0004120!2.73e-18!448;UBERON:0006603!2.73e-18!448;UBERON:0000914!1.92e-15!83;UBERON:0002329!1.92e-15!83;UBERON:0003077!1.92e-15!83;UBERON:0003059!1.92e-15!83;UBERON:0007282!1.92e-15!83;UBERON:0009618!1.92e-15!83;UBERON:0007285!1.92e-15!83;UBERON:0003102!4.00e-13!95;UBERON:0004290!5.65e-13!70;UBERON:0000486!7.85e-13!82;UBERON:0004872!1.11e-12!84;UBERON:0001981!5.01e-12!60;UBERON:0007500!5.01e-12!60;UBERON:0004537!5.01e-12!60;UBERON:0006965!5.01e-12!60;UBERON:0002204!5.43e-12!167;UBERON:0002199!8.10e-12!45;UBERON:0002416!8.10e-12!45;UBERON:0000468!9.40e-12!659;UBERON:0005256!1.68e-11!143;UBERON:0000055!2.05e-11!69;UBERON:0001637!2.91e-11!42;UBERON:0003509!2.91e-11!42;UBERON:0004572!2.91e-11!42;UBERON:0002049!3.88e-11!79;UBERON:0007798!3.88e-11!79;UBERON:0002097!6.88e-11!40;UBERON:0003914!9.75e-11!118;UBERON:0000467!1.50e-10!625;UBERON:0003081!1.59e-10!216;UBERON:0000480!2.06e-10!626;UBERON:0002100!1.08e-09!216;UBERON:0001134!3.33e-09!61;UBERON:0002036!3.33e-09!61;UBERON:0003082!3.33e-09!61;UBERON:0002385!9.90e-09!63;UBERON:0001015!9.90e-09!63;UBERON:0000383!9.90e-09!63;UBERON:0003104!1.01e-08!238;UBERON:0009142!1.01e-08!238;UBERON:0004573!2.06e-08!33;UBERON:0004571!2.06e-08!33 | |ontology_enrichment_uberon=UBERON:0000926!2.73e-18!448;UBERON:0004120!2.73e-18!448;UBERON:0006603!2.73e-18!448;UBERON:0000914!1.92e-15!83;UBERON:0002329!1.92e-15!83;UBERON:0003077!1.92e-15!83;UBERON:0003059!1.92e-15!83;UBERON:0007282!1.92e-15!83;UBERON:0009618!1.92e-15!83;UBERON:0007285!1.92e-15!83;UBERON:0003102!4.00e-13!95;UBERON:0004290!5.65e-13!70;UBERON:0000486!7.85e-13!82;UBERON:0004872!1.11e-12!84;UBERON:0001981!5.01e-12!60;UBERON:0007500!5.01e-12!60;UBERON:0004537!5.01e-12!60;UBERON:0006965!5.01e-12!60;UBERON:0002204!5.43e-12!167;UBERON:0002199!8.10e-12!45;UBERON:0002416!8.10e-12!45;UBERON:0000468!9.40e-12!659;UBERON:0005256!1.68e-11!143;UBERON:0000055!2.05e-11!69;UBERON:0001637!2.91e-11!42;UBERON:0003509!2.91e-11!42;UBERON:0004572!2.91e-11!42;UBERON:0002049!3.88e-11!79;UBERON:0007798!3.88e-11!79;UBERON:0002097!6.88e-11!40;UBERON:0003914!9.75e-11!118;UBERON:0000467!1.50e-10!625;UBERON:0003081!1.59e-10!216;UBERON:0000480!2.06e-10!626;UBERON:0002100!1.08e-09!216;UBERON:0001134!3.33e-09!61;UBERON:0002036!3.33e-09!61;UBERON:0003082!3.33e-09!61;UBERON:0002385!9.90e-09!63;UBERON:0001015!9.90e-09!63;UBERON:0000383!9.90e-09!63;UBERON:0003104!1.01e-08!238;UBERON:0009142!1.01e-08!238;UBERON:0004573!2.06e-08!33;UBERON:0004571!2.06e-08!33 | ||
|ontology_enrichment_uberon_v019=UBERON:0003102;4.25e-09;50!UBERON:0002097;7.51e-09;41!UBERON:0002199;1.21e-08;46!UBERON:0002416;1.21e-08;46!UBERON:0001637;1.54e-08;42!UBERON:0003509;1.54e-08;42!UBERON:0004572;1.54e-08;42!UBERON:0004573;1.17e-07;33!UBERON:0004571;1.17e-07;33!UBERON:0007500;1.44e-07;56!UBERON:0001981;1.44e-07;56!UBERON:0004537;1.44e-07;56 | |||
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| ||
|short_description=p1@LMNA | |short_description=p1@LMNA | ||
}} | }} |
Latest revision as of 14:56, 17 September 2015
Short description: | p1@LMNA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LMNA_5end |
Coexpression cluster: | C1839_Mast_immature_Fibroblast_Mesenchymal_Hair_tenocyte_Keratocytes |
Association with transcript: | 0bp_to_ENST00000368300, ENST00000469565, ENST00000470199, ENST00000478063, uc009wro.1_5end |
EntrezGene: | LMNA |
HGNC: | 6636 |
UniProt: | P02545Q6UYC3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 6.38e-21 | 76 |
mesodermal cell | 2.21e-16 | 121 |
embryonic cell | 1.14e-12 | 250 |
skin fibroblast | 4.99e-11 | 23 |
muscle precursor cell | 6.29e-10 | 58 |
myoblast | 6.29e-10 | 58 |
multi-potent skeletal muscle stem cell | 6.29e-10 | 58 |
muscle cell | 1.12e-09 | 55 |
smooth muscle cell | 7.29e-09 | 43 |
smooth muscle myoblast | 7.29e-09 | 43 |
somatic stem cell | 1.86e-08 | 433 |
multi fate stem cell | 2.92e-08 | 427 |
stem cell | 2.72e-07 | 441 |
electrically responsive cell | 4.44e-07 | 61 |
electrically active cell | 4.44e-07 | 61 |