FFCP PHASE1:Hg19::chr6:29910301..29910324,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr6:29910301..29910324,+ to FFCP PHASE1:Hg19::chr6:29910301..29910324,+: NSchange) |
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(10 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3105 | |EntrezGene=3105 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4931 | |HGNC=4931 | ||
|TSSclassifier=strong | |||
|UniProt=B4DVX9,P04439,P13746,P16188 | |UniProt=B4DVX9,P04439,P13746,P16188 | ||
|association_with_transcript=0bp_to_ENST00000355767,ENST00000376809,ENST00000496081_5end | |||
|cluster_id=chr6:29910301..29910324,+ | |||
|coexpression_cluster_id=C4586 | |||
|description=CAGE_peak_1_at_HLA-A_5end | |||
|id=chr6:29910301..29910324,+ | |||
|ontology_enrichment_celltype=CL:0000738!4.95e-43!140;CL:0002087!1.36e-36!119;CL:0002031!3.30e-34!124;CL:0000037!8.82e-26!172;CL:0000566!8.82e-26!172;CL:0000988!2.34e-25!182;CL:0000766!6.64e-25!76;CL:0002032!1.62e-24!165;CL:0000837!1.62e-24!165;CL:0002057!3.97e-21!42;CL:0002009!1.14e-20!65;CL:0000557!1.46e-20!71;CL:0002194!2.18e-20!63;CL:0000576!2.18e-20!63;CL:0000040!2.18e-20!63;CL:0000559!2.18e-20!63;CL:0000860!3.59e-19!45;CL:0000839!5.60e-19!70;CL:0000542!1.26e-14!53;CL:0000051!1.26e-14!53;CL:0000838!1.91e-14!52;CL:0000134!3.95e-11!358;CL:0000763!5.23e-11!112;CL:0000049!5.23e-11!112;CL:0000791!2.62e-10!18;CL:0000789!2.62e-10!18;CL:0002420!2.62e-10!18;CL:0002419!2.62e-10!18;CL:0000790!2.62e-10!18;CL:0002320!3.47e-10!365;CL:0000084!8.62e-09!25;CL:0000827!8.62e-09!25;CL:0000048!1.38e-08!430;CL:0000219!2.69e-08!390;CL:0000723!5.93e-08!436;CL:0000034!7.86e-08!444;CL:0000625!9.03e-07!11 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.99e-15;33!CL:0002057;1.99e-15;33!CL:0000473;7.55e-15;39!CL:0000234;7.55e-15;39!CL:0000576;6.96e-13;48!CL:0000766;1.57e-11;69!CL:0002087;2.36e-11;104!CL:0000791;2.64e-10;18!CL:0000789;2.64e-10;18!CL:0002419;2.64e-10;18!CL:0000738;3.33e-09;136!CL:0000084;8.66e-09;25!CL:0000542;1.17e-08;53!CL:0000625;9.08e-07;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,2.06e-44,136;CL:0002087,5.29e-38,115;CL:0002031,1.75e-35,120;CL:0000988,1.56e-26,177;CL:0000037,1.68e-26,168;CL:0000766,1.88e-26,72;CL:0002032,3.08e-25,161;CL:0000837,3.08e-25,161;CL:0000473,2.34e-23,48;CL:0000234,2.34e-23,48;CL:0002009,3.48e-22,61;CL:0000557,6.02e-22,67;CL:0002194,6.26e-22,59;CL:0000576,6.26e-22,59;CL:0000040,6.26e-22,59;CL:0000559,6.26e-22,59;CL:0000860,3.97e-21,42;CL:0002057,3.97e-21,42;CL:0000839,2.80e-20,66;CL:0000542,1.26e-14,53;CL:0000051,1.26e-14,53;CL:0000838,1.91e-14,52;CL:0000134,1.28e-11,354;CL:0000763,1.61e-11,108;CL:0000049,1.61e-11,108;CL:0002320,1.20e-10,361;CL:0000791,2.62e-10,18;CL:0000789,2.62e-10,18;CL:0002420,2.62e-10,18;CL:0002419,2.62e-10,18;CL:0000790,2.62e-10,18;CL:0000048,8.15e-09,427;CL:0000084,8.62e-09,25;CL:0000827,8.62e-09,25;CL:0000219,1.08e-08,386;CL:0000723,3.60e-08,433;CL:0000034,4.82e-08,441;CL:0000625,9.03e-07,11 | |||
|ontology_enrichment_development_v019=CL:0002057;1.82e-15;42!CL:0000790;2.64e-10;18!CL:0000051;1.17e-08;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!1.34e-26!112;UBERON:0002390!2.19e-26!102;UBERON:0003061!2.19e-26!102;UBERON:0002371!6.27e-19!80;UBERON:0002405!1.41e-17!115;UBERON:0001474!1.48e-17!86;UBERON:0004765!5.82e-13!101;UBERON:0001434!5.82e-13!101;UBERON:0003081!1.24e-10!216;UBERON:0002384!6.33e-10!375;UBERON:0000178!8.12e-07!15;UBERON:0000179!8.12e-07!15;UBERON:0000463!8.12e-07!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;8.12e-07;15!UBERON:0000179;8.12e-07;15!UBERON:0000463;8.12e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,1.01e-27,108;UBERON:0002390,1.31e-27,98;UBERON:0003061,1.31e-27,98;UBERON:0002405,5.70e-22,93;UBERON:0002371,4.53e-20,76;UBERON:0001474,1.50e-18,82;UBERON:0004765,5.67e-15,90;UBERON:0001434,8.38e-13,100;UBERON:0003081,1.45e-12,203;UBERON:0002384,2.26e-10,371;UBERON:0000926,6.25e-07,315;UBERON:0004120,6.25e-07,315;UBERON:0006603,6.25e-07,315;UBERON:0000178,8.12e-07,15;UBERON:0000179,8.12e-07,15;UBERON:0000463,8.12e-07,15 | |||
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| ||
|short_description=p1@HLA-A | |||
}} | }} |
Latest revision as of 15:02, 17 September 2015
Short description: | p1@HLA-A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_HLA-A_5end |
Coexpression cluster: | C4586_Eosinophils_CD14_myeloma_renal_CD4_smallcell_Neutrophils |
Association with transcript: | 0bp_to_ENST00000355767, ENST00000376809, ENST00000496081_5end |
EntrezGene: | HLA-A |
HGNC: | 4931 |
UniProt: | B4DVX9P04439P13746P16188 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 1.01e-27 | 108 |
hematopoietic system | 1.31e-27 | 98 |
blood island | 1.31e-27 | 98 |
immune system | 5.70e-22 | 93 |
bone marrow | 4.53e-20 | 76 |
bone element | 1.50e-18 | 82 |
skeletal element | 5.67e-15 | 90 |
skeletal system | 8.38e-13 | 100 |
lateral plate mesoderm | 1.45e-12 | 203 |
connective tissue | 2.26e-10 | 371 |
mesoderm | 6.25e-07 | 315 |
mesoderm-derived structure | 6.25e-07 | 315 |
presumptive mesoderm | 6.25e-07 | 315 |
blood | 8.12e-07 | 15 |
haemolymphatic fluid | 8.12e-07 | 15 |
organism substance | 8.12e-07 | 15 |