FFCP PHASE1:Hg19::chr1:156721446..156721494,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3068 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4856 | |||
|TSSclassifier=strong | |||
|UniProt=P51858 | |||
|association_with_transcript=41bp_to_ENST00000357325_5end | |||
|cluster_id=chr1:156721446..156721494,- | |||
|coexpression_cluster_id=C3883 | |||
|description=CAGE_peak_1_at_HDGF_5end | |||
|id=chr1:156721446..156721494,- | |||
|ontology_enrichment_celltype=CL:0000066!8.62e-38!254;CL:0000548!5.25e-28!679;CL:0000004!5.25e-28!679;CL:0000255!5.25e-28!679;CL:0000012!1.96e-27!682;CL:0000220!2.00e-23!246;CL:0002321!3.88e-23!248;CL:0000003!2.97e-18!722;CL:0000063!1.73e-15!578;CL:0000076!9.68e-15!62;CL:0000144!8.28e-11!625;CL:0000223!3.37e-10!59;CL:0000222!6.36e-10!119;CL:0002371!5.44e-09!591;CL:0002076!8.22e-09!43;CL:0000213!6.11e-08!57;CL:0000215!6.11e-08!57 | |||
|ontology_enrichment_celltype_v019=CL:0000076;1.41e-07;63 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,5.08e-38,253;CL:0002321,4.29e-23,250;CL:0000076,1.24e-14,63;CL:0000223,2.90e-10,58;CL:0000222,7.41e-10,121;CL:0002076,6.75e-09,42;CL:0000213,5.20e-08,58;CL:0000215,5.20e-08,58 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!3.82e-34!235;DOID:14566!3.36e-33!239;DOID:305!5.73e-19!106;DOID:0050687!1.90e-18!143;DOID:0050686!1.17e-15!137;DOID:1240!5.86e-11!39;DOID:8692!1.14e-10!31;DOID:2531!1.75e-10!51;DOID:0060083!1.75e-10!51 | |||
|ontology_enrichment_disease_v019=DOID:8692;2.03e-10;31!DOID:1240;2.15e-09;39!DOID:2531;3.40e-07;51!DOID:0060083;3.40e-07;51 | |||
|ontology_enrichment_disease_v019_2=DOID:162,3.82e-34,235;DOID:14566,3.36e-33,239;DOID:305,5.73e-19,106;DOID:0050687,1.90e-18,143;DOID:0050686,1.17e-15,137;DOID:1240,5.86e-11,39;DOID:8692,1.14e-10,31;DOID:2531,1.75e-10,51;DOID:0060083,1.75e-10,51 | |||
|ontology_enrichment_uberon=UBERON:0003104!1.44e-12!238;UBERON:0009142!1.44e-12!238;UBERON:0004119!8.96e-10!169;UBERON:0000925!8.96e-10!169;UBERON:0006595!8.96e-10!169;UBERON:0002100!9.53e-09!216;UBERON:0003914!3.41e-08!118;UBERON:0000077!8.15e-08!130;UBERON:0001041!1.62e-07!98;UBERON:0001007!1.64e-07!155;UBERON:0001555!1.64e-07!155;UBERON:0007026!1.64e-07!155;UBERON:0005177!1.99e-07!107;UBERON:0008947!2.55e-07!38;UBERON:0003258!2.55e-07!38;UBERON:0000072!4.16e-07!46;UBERON:0001737!4.28e-07!9;UBERON:0000490!5.21e-07!138;UBERON:0009569!5.64e-07!113;UBERON:0005256!5.70e-07!143 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;4.26e-07;9!UBERON:0001557;4.26e-07;9!UBERON:0000072;4.64e-07;37!UBERON:0006554;5.55e-07;30!UBERON:0001008;5.55e-07;30 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002100,6.37e-10,199;UBERON:0005177,7.88e-09,101;UBERON:0004119,1.13e-08,160;UBERON:0000925,1.13e-08,160;UBERON:0006595,1.13e-08,160;UBERON:0003914,2.52e-08,117;UBERON:0000490,2.65e-08,148;UBERON:0008947,2.55e-07,38;UBERON:0003258,2.55e-07,38;UBERON:0001737,4.28e-07,9;UBERON:0009569,5.65e-07,112;UBERON:0003104,6.46e-07,160;UBERON:0009142,6.46e-07,160;UBERON:0000072,6.97e-07,47 | |||
|phase1_expression=91.9292599109016,94.2042305120326,88.096502559982,54.0395811106904,48.2717981981471,46.2339417773195,58.2589719787114,168.037486331537,72.8707902677549,226.075221581388,473.806993053278,183.053869845084,181.999214977633,151.118716964217,95.1110468339118,215.144046864568,215.764641032584,243.923570189383,190.781724327088,146.637180169454,173.604588248859,190.267015937199,111.345798993981,180.81111552128,142.239810660912,111.487158986261,129.472629562564,127.039201040278,103.454804811262,113.613501836775,90.5674321399045,428.45029060718,502.110266603343,339.064427322944,116.510669672774,164.205463522972,266.295598476706,119.109012834354,94.6569792059069,93.748696149248,58.4419387766203,54.7380295572075,46.878753309422,79.823633089981,69.1512976950521,81.0230764367306,146.895151324393,87.5787601486489,77.4265927237759,72.7861752575041,80.4344618501376,65.9785421389153,95.4945535640433,73.5852539285562,111.04971900736,103.533286748433,74.7762851158497,101.125568000288,113.557124069605,93.3903468791432,92.703883240861,70.2583269397705,69.6128165099495,67.3435105841657,154.971733427664,161.704789036975,191.829252690637,70.8521236024016,78.2224377630302,73.4098295103294,148.928277647809,131.843393683548,150.003171646979,81.5445405164095,89.2938059853183,58.0754448058201,83.4601729418459,79.7439300988399,68.3083743462591,62.7028036230747,75.7872540128533,69.4123784305609,15.839662001519,21.8455444504853,21.3482220927253,30.297845802222,18.4182154036566,23.5648500381338,15.8650769468367,21.9432363543134,17.0763890732835,25.8384363323213,21.789574003138,60.7988111463519,49.3247535423752,156.450146356396,36.7847270112868,46.3752700044014,49.3443597598822,58.0137139005653,36.1773715963285,31.2475551784924,38.9653456815823,87.3457981979761,43.3070683988011,45.1929144950587,54.1607727530031,133.855429113331,105.738249566181,112.639964653518,116.067007470056,87.8103349777209,29.360739506088,24.8812970123433,20.9071047609954,93.5935170681897,41.0045928154056,45.0151953582245,31.8804811944574,34.4050647470024,27.3455050619696,25.6622052001061,25.5977702432214,16.3822862277656,31.2326816380865,38.3579148311307,31.2028638829998,41.7325958475196,64.4530871838253,46.6334580502613,92.6466091993054,217.977779403682,89.3759307286277,119.997798591676,121.825112284521,106.027651879323,95.4343136461319,87.5942766544745,162.505350705033,140.354708593803,124.725395684239,71.1871275330068,491.070048618347,440.862702470687,40.5684242068354,52.9354401389772,70.3347611144797,99.9275715839383,76.075323133757,56.4615402020939,257.59607994725,237.42474824929,303.05365790343,235.733411782312,250.441163417314,282.546229072449,270.64848166517,116.287541626198,108.508710119447,86.3579180932849,159.117580258113,180.944761161006,182.314356988483,150.37419986146,273.017836436153,172.25917585999,188.380143633356,189.975567575365,274.436781063931,261.048056381235,237.246258389877,93.5640963796049,120.211881885981,439.146710507532,133.188483054345,153.476180137471,41.3116644137243,55.6463044252699,137.256663910764,191.191061648527,271.142449153451,170.940611053092,86.8278788765348,128.379270482413,133.711836746809,105.193412213227,131.36811078144,303.914897088434,301.85879429492,284.094967129136,264.67361325724,164.05599460534,175.470271695055,165.170148681844,140.866378165876,182.286126890664,151.165617860145,150.876362874821,197.566276493567,137.434365652642,279.542457166517,187.189758716922,206.946031868229,106.946748576895,135.205107231298,164.890434139873,183.440669924955,191.813821723596,57.9428523275024,125.998859402955,147.504603207055,57.9175815442896,108.720418346553,37.6155188466619,133.259669133418,63.7974535871986,106.011461615384,55.5354303337052,203.430275999482,68.2146359775386,48.6363141747762,88.0573338509576,206.863922618795,257.809978119838,250.926430943568,234.319354432816,106.726992863396,132.662298089807,119.795955098473,105.319631895616,122.123291823804,140.516283244195,284.738148840265,259.869339029926,266.600398210287,136.988538769434,156.6478475223,450.867214951845,424.664834306738,392.124945620425,478.344959740393,408.959716561446,389.36108596131,466.785988850489,455.822463486179,419.759148228512,120.319339103818,225.789255823548,188.08932317845,194.051499028915,131.825236214704,196.565443335525,115.794821709555,167.755977777567,161.729796684194,119.068060347177,378.309233803532,428.25067991153,295.052534028137,331.374045222377,394.879666036114,351.497957424498,206.393819096141,99.584217873591,47.1982950828003,271.986387581863,337.053453155773,216.128716938504,320.822985571466,338.24354786538,67.2172426618595,73.0093307234422,101.960977330068,154.660826078182,128.002381687531,235.913761811331,242.166245388502,282.786822174085,326.64204264876,36.9497428421958,43.3198295345072,38.1483732595021,34.4446688666538,36.7365481270766,40.1306691926508,79.0716040905635,114.873098265846,119.750712215894,107.866039845786,98.8128660306488,71.170781725014,121.886488683407,71.9334113574912,157.310623085938,134.95967125112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| |||
|short_description=p1@HDGF | |||
}} |
Latest revision as of 17:55, 17 September 2015
Short description: | p1@HDGF |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_HDGF_5end |
Coexpression cluster: | C3883_Reticulocytes_teratocarcinoma_Renal_transitionalcell_mesothelioma_Tracheal_Alveolar |
Association with transcript: | 41bp_to_ENST00000357325_5end |
EntrezGene: | HDGF |
HGNC: | 4856 |
UniProt: | P51858 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 5.08e-38 | 253 |
embryonic cell | 4.29e-23 | 250 |
squamous epithelial cell | 1.24e-14 | 63 |
endodermal cell | 2.90e-10 | 58 |
mesodermal cell | 7.41e-10 | 121 |
endo-epithelial cell | 6.75e-09 | 42 |
lining cell | 5.20e-08 | 58 |
barrier cell | 5.20e-08 | 58 |
Ontology term | p-value | n |
---|---|---|
trunk | 6.37e-10 | 199 |
trunk region element | 7.88e-09 | 101 |
endoderm-derived structure | 1.13e-08 | 160 |
endoderm | 1.13e-08 | 160 |
presumptive endoderm | 1.13e-08 | 160 |
epithelial tube | 2.52e-08 | 117 |
unilaminar epithelium | 2.65e-08 | 148 |
respiratory primordium | 2.55e-07 | 38 |
endoderm of foregut | 2.55e-07 | 38 |
larynx | 4.28e-07 | 9 |
subdivision of trunk | 5.65e-07 | 112 |
mesenchyme | 6.46e-07 | 160 |
entire embryonic mesenchyme | 6.46e-07 | 160 |
segment of respiratory tract | 6.97e-07 | 47 |
Ontology term | p-value | n |
---|---|---|
cancer | 3.82e-34 | 235 |
disease of cellular proliferation | 3.36e-33 | 239 |
carcinoma | 5.73e-19 | 106 |
cell type cancer | 1.90e-18 | 143 |
organ system cancer | 1.17e-15 | 137 |
leukemia | 5.86e-11 | 39 |
myeloid leukemia | 1.14e-10 | 31 |
hematologic cancer | 1.75e-10 | 51 |
immune system cancer | 1.75e-10 | 51 |