FFCP PHASE1:Hg19::chr6:31239852..31239876,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr6:31239852..31239876,-
|short_description=p1@HLA-C
|description=CAGE_peak_1_at_HLA-C_5end
|association_with_transcript=0bp_to_ENST00000376228,ENST00000383329...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3107 | |EntrezGene=3107 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4933 | |HGNC=4933 | ||
|TSSclassifier=strong | |||
|UniProt=P10321,A2AEA2,A2AEA4 | |UniProt=P10321,A2AEA2,A2AEA4 | ||
|association_with_transcript=0bp_to_ENST00000376228,ENST00000383329,ENST00000396254,ENST00000484378,uc003nsy.2,uc003nsz.2,uc003nta.2,uc010jsl.2,uc011dnl.1_5end | |||
|cluster_id=chr6:31239852..31239876,- | |||
|coexpression_cluster_id=C4591 | |||
|description=CAGE_peak_1_at_HLA-C_5end | |||
|id=chr6:31239852..31239876,- | |||
|ontology_enrichment_celltype=CL:0000738!1.95e-26!140;CL:0000766!2.75e-23!76;CL:0002057!1.28e-22!42;CL:0002087!1.68e-21!119;CL:0002031!4.97e-21!124;CL:0000557!1.63e-19!71;CL:0002009!1.70e-19!65;CL:0000860!3.07e-19!45;CL:0002194!5.65e-19!63;CL:0000576!5.65e-19!63;CL:0000040!5.65e-19!63;CL:0000559!5.65e-19!63;CL:0000839!2.90e-18!70;CL:0002032!3.03e-14!165;CL:0000837!3.03e-14!165;CL:0000037!3.45e-14!172;CL:0000566!3.45e-14!172;CL:0000988!7.38e-14!182;CL:0000763!1.46e-10!112;CL:0000049!1.46e-10!112;CL:0000134!1.23e-07!358 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.32e-16;33!CL:0002057;1.32e-16;33!CL:0000473;1.50e-14;39!CL:0000234;1.50e-14;39!CL:0000576;5.36e-13;48!CL:0000766;2.99e-12;69!CL:0002087;1.65e-07;104!CL:0000738;4.73e-07;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,1.45e-28,136;CL:0000766,2.76e-26,72;CL:0002087,1.44e-23,115;CL:0000473,2.28e-23,48;CL:0000234,2.28e-23,48;CL:0002031,5.20e-23,120;CL:0000860,1.28e-22,42;CL:0002057,1.28e-22,42;CL:0002009,1.86e-22,61;CL:0000557,2.73e-22,67;CL:0002194,6.04e-22,59;CL:0000576,6.04e-22,59;CL:0000040,6.04e-22,59;CL:0000559,6.04e-22,59;CL:0000839,6.14e-21,66;CL:0002032,1.59e-15,161;CL:0000837,1.59e-15,161;CL:0000037,1.96e-15,168;CL:0000988,2.89e-15,177;CL:0000763,6.84e-12,108;CL:0000049,6.84e-12,108;CL:0000134,2.61e-08,354;CL:0002320,2.63e-07,361;CL:0000048,3.13e-07,427;CL:0000219,5.73e-07,386;CL:0000034,8.06e-07,441 | |||
|ontology_enrichment_development_v019=CL:0002057;2.25e-16;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!4.16e-22!112;UBERON:0002390!3.25e-20!102;UBERON:0003061!3.25e-20!102;UBERON:0002371!1.08e-15!80;UBERON:0002405!2.63e-15!115;UBERON:0001474!1.14e-14!86;UBERON:0003081!1.48e-13!216;UBERON:0004765!1.58e-10!101;UBERON:0001434!1.58e-10!101 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,2.66e-24,108;UBERON:0002390,2.05e-22,98;UBERON:0003061,2.05e-22,98;UBERON:0002405,7.07e-21,93;UBERON:0002371,7.09e-18,76;UBERON:0001474,1.20e-16,82;UBERON:0003081,2.11e-14,203;UBERON:0004765,9.10e-13,90;UBERON:0001434,1.62e-10,100;UBERON:0000926,2.67e-08,315;UBERON:0004120,2.67e-08,315;UBERON:0006603,2.67e-08,315;UBERON:0002384,8.93e-07,371 | |||
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| ||
|short_description=p1@HLA-C | |||
}} | }} |
Latest revision as of 20:08, 17 September 2015
Short description: | p1@HLA-C |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_HLA-C_5end |
Coexpression cluster: | C4591_Neutrophils_Basophils_Eosinophils_migratory_CD14_CD4_CD8 |
Association with transcript: | 0bp_to_ENST00000376228, ENST00000383329, ENST00000396254, ENST00000484378, uc003nsy.2, uc003nsz.2, uc003nta.2, uc010jsl.2, uc011dnl.1_5end |
EntrezGene: | HLA-C |
HGNC: | 4933 |
UniProt: | P10321A2AEA2A2AEA4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 1.45e-28 | 136 |
myeloid leukocyte | 2.76e-26 | 72 |
nongranular leukocyte | 1.44e-23 | 115 |
defensive cell | 2.28e-23 | 48 |
phagocyte | 2.28e-23 | 48 |
hematopoietic lineage restricted progenitor cell | 5.20e-23 | 120 |
classical monocyte | 1.28e-22 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.28e-22 | 42 |
macrophage dendritic cell progenitor | 1.86e-22 | 61 |
granulocyte monocyte progenitor cell | 2.73e-22 | 67 |
monopoietic cell | 6.04e-22 | 59 |
monocyte | 6.04e-22 | 59 |
monoblast | 6.04e-22 | 59 |
promonocyte | 6.04e-22 | 59 |
myeloid lineage restricted progenitor cell | 6.14e-21 | 66 |
hematopoietic oligopotent progenitor cell | 1.59e-15 | 161 |
hematopoietic multipotent progenitor cell | 1.59e-15 | 161 |
hematopoietic stem cell | 1.96e-15 | 168 |
hematopoietic cell | 2.89e-15 | 177 |
myeloid cell | 6.84e-12 | 108 |
common myeloid progenitor | 6.84e-12 | 108 |
mesenchymal cell | 2.61e-08 | 354 |
connective tissue cell | 2.63e-07 | 361 |
multi fate stem cell | 3.13e-07 | 427 |
motile cell | 5.73e-07 | 386 |
stem cell | 8.06e-07 | 441 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 2.66e-24 | 108 |
hematopoietic system | 2.05e-22 | 98 |
blood island | 2.05e-22 | 98 |
immune system | 7.07e-21 | 93 |
bone marrow | 7.09e-18 | 76 |
bone element | 1.20e-16 | 82 |
lateral plate mesoderm | 2.11e-14 | 203 |
skeletal element | 9.10e-13 | 90 |
skeletal system | 1.62e-10 | 100 |
mesoderm | 2.67e-08 | 315 |
mesoderm-derived structure | 2.67e-08 | 315 |
presumptive mesoderm | 2.67e-08 | 315 |
connective tissue | 8.93e-07 | 371 |