FFCP PHASE1:Hg19::chr1:158224402..158224413,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=909 | |EntrezGene=909 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1634 | |HGNC=1634 | ||
|TSSclassifier=strong | |||
|UniProt=P06126 | |UniProt=P06126 | ||
|association_with_transcript=475bp_to_ENST00000289429,NM_001763,uc001frt.2_5end | |association_with_transcript=475bp_to_ENST00000289429,NM_001763,uc001frt.2_5end | ||
|cluster_id=chr1:158224402..158224413,+ | |||
|coexpression_cluster_id=C28 | |coexpression_cluster_id=C28 | ||
|description=CAGE_peak_11_at_CD1A_5end | |description=CAGE_peak_11_at_CD1A_5end | ||
|id=chr1:158224402..158224413,+ | |id=chr1:158224402..158224413,+ | ||
|ontology_enrichment_celltype=CL:0000840!2.85e-44!5;CL:0001029!2.85e-44!5;CL:0000990!1.07e-29!8;CL:0000451!2.18e-24!10;CL:0001014!1.44e-09!2;CL:0001016!1.44e-09!2 | |ontology_enrichment_celltype=CL:0000840!2.85e-44!5;CL:0001029!2.85e-44!5;CL:0000990!1.07e-29!8;CL:0000451!2.18e-24!10;CL:0001014!1.44e-09!2;CL:0001016!1.44e-09!2 | ||
|ontology_enrichment_celltype_v019=CL:0000840;1.95e-65;5!CL:0000990;6.92e-44;8!CL:0000451;4.87e-36;10!CL:0001014;1.21e-13;2!CL:0001016;1.21e-13;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000840,2.31e-65,5;CL:0001029,2.31e-65,5;CL:0000990,7.73e-44,8;CL:0000451,5.34e-36,10;CL:0001014,1.55e-13,2;CL:0001016,1.55e-13,2;CL:0002009,9.07e-07,61 | |||
|ontology_enrichment_development_v019=UBERON:0006965;1.21e-13;2 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004177!4.59e-22!7;UBERON:0002370!6.79e-18!4;UBERON:0005058!6.79e-18!4;UBERON:0009113!6.79e-18!4;UBERON:0003295!6.79e-18!4;UBERON:0005562!6.79e-18!4;UBERON:0000974!1.06e-15!10;UBERON:0003351!2.91e-12!6;UBERON:0000341!1.57e-09!2;UBERON:0003408!1.02e-07!10;UBERON:0001042!1.02e-07!10;UBERON:0009145!1.02e-07!10;UBERON:0002390!1.67e-07!102;UBERON:0003061!1.67e-07!102;UBERON:0006562!4.30e-07!11;UBERON:0009722!4.30e-07!11;UBERON:0007690!4.30e-07!11;UBERON:0002193!8.51e-07!112 | |ontology_enrichment_uberon=UBERON:0004177!4.59e-22!7;UBERON:0002370!6.79e-18!4;UBERON:0005058!6.79e-18!4;UBERON:0009113!6.79e-18!4;UBERON:0003295!6.79e-18!4;UBERON:0005562!6.79e-18!4;UBERON:0000974!1.06e-15!10;UBERON:0003351!2.91e-12!6;UBERON:0000341!1.57e-09!2;UBERON:0003408!1.02e-07!10;UBERON:0001042!1.02e-07!10;UBERON:0009145!1.02e-07!10;UBERON:0002390!1.67e-07!102;UBERON:0003061!1.67e-07!102;UBERON:0006562!4.30e-07!11;UBERON:0009722!4.30e-07!11;UBERON:0007690!4.30e-07!11;UBERON:0002193!8.51e-07!112 | ||
|ontology_enrichment_uberon_v019=UBERON:0002370;8.82e-51;2!UBERON:0005058;8.82e-51;2!UBERON:0009113;8.82e-51;2!UBERON:0004177;4.91e-21;5!UBERON:0005057;4.91e-21;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,5.23e-26,4;UBERON:0005058,5.23e-26,4;UBERON:0009113,5.23e-26,4;UBERON:0003295,5.23e-26,4;UBERON:0005562,5.23e-26,4;UBERON:0003351,1.03e-17,6;UBERON:0004177,2.47e-15,7;UBERON:0005057,2.47e-15,7;UBERON:0000974,4.89e-11,10;UBERON:0003408,4.89e-11,10;UBERON:0001042,4.89e-11,10;UBERON:0009145,4.89e-11,10;UBERON:0006562,4.03e-10,11;UBERON:0009722,4.03e-10,11;UBERON:0007690,4.03e-10,11;UBERON:0002405,1.38e-09,93;UBERON:0002390,4.18e-09,98;UBERON:0003061,4.18e-09,98;UBERON:0002193,2.85e-08,108 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.29818957461873,1.21890816109487,1.99436940778298,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.441463099414651,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.34768083049767,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.1248694577575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193373663920732,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.952257725854961,16.7285276475256,9.68365543015383,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.61019034872821,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.29818957461873,1.21890816109487,1.99436940778298,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.441463099414651,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.34768083049767,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.1248694577575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193373663920732,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.952257725854961,16.7285276475256,9.68365543015383,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.61019034872821,0 | ||
|short_description=p11@CD1A | |short_description=p11@CD1A | ||
}} | }} |
Latest revision as of 20:13, 17 September 2015
Short description: | p11@CD1A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_11_at_CD1A_5end |
Coexpression cluster: | C28_thymus_acute_vein_Hodgkin_chronic_throat_Dendritic |
Association with transcript: | 475bp_to_ENST00000289429, NM_001763, uc001frt.2_5end |
EntrezGene: | CD1A |
HGNC: | 1634 |
UniProt: | P06126 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
immature conventional dendritic cell | 2.31e-65 | 5 |
common dendritic progenitor | 2.31e-65 | 5 |
conventional dendritic cell | 7.73e-44 | 8 |
dendritic cell | 5.34e-36 | 10 |
CD1a-positive Langerhans cell | 1.55e-13 | 2 |
immature CD1a-positive Langerhans cell | 1.55e-13 | 2 |
macrophage dendritic cell progenitor | 9.07e-07 | 61 |
Ontology term | p-value | n |
---|---|---|
thymus | 5.23e-26 | 4 |
hemolymphoid system gland | 5.23e-26 | 4 |
thymic region | 5.23e-26 | 4 |
pharyngeal gland | 5.23e-26 | 4 |
thymus primordium | 5.23e-26 | 4 |
pharyngeal epithelium | 1.03e-17 | 6 |
hemopoietic organ | 2.47e-15 | 7 |
immune organ | 2.47e-15 | 7 |
neck | 4.89e-11 | 10 |
gland of gut | 4.89e-11 | 10 |
chordate pharynx | 4.89e-11 | 10 |
pharyngeal region of foregut | 4.89e-11 | 10 |
pharynx | 4.03e-10 | 11 |
entire pharyngeal arch endoderm | 4.03e-10 | 11 |
early pharyngeal endoderm | 4.03e-10 | 11 |
immune system | 1.38e-09 | 93 |
hematopoietic system | 4.18e-09 | 98 |
blood island | 4.18e-09 | 98 |
hemolymphoid system | 2.85e-08 | 108 |