FFCP PHASE1:Hg19::chr8:28748157..28748175,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr8:28748157..28748175,+ to FFCP PHASE1:Hg19::chr8:28748157..28748175,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=79618 | |EntrezGene=79618 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26137 | |HGNC=26137 | ||
|TSSclassifier=strong | |||
|UniProt=E5RGZ2 | |UniProt=E5RGZ2 | ||
|association_with_transcript=15bp_to_ENST00000519047,ENST00000521516_5end | |||
|cluster_id=chr8:28748157..28748175,+ | |||
|description=CAGE_peak_3_at_HMBOX1_5end | |||
|id=chr8:28748157..28748175,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:1036;4.96e-15;8!DOID:3095;7.27e-07;22!DOID:2994;7.27e-07;22 | |||
|ontology_enrichment_disease_v019_2=DOID:1036,7.99e-16,8;DOID:8692,4.49e-07,31;DOID:3095,7.43e-07,22;DOID:2994,7.43e-07,22;DOID:1240,7.67e-07,39;DOID:171,8.89e-07,10 | |||
|ontology_enrichment_uberon=UBERON:0001049!1.65e-16!57;UBERON:0005068!1.65e-16!57;UBERON:0006241!1.65e-16!57;UBERON:0007135!1.65e-16!57;UBERON:0001017!3.01e-16!82;UBERON:0000073!1.39e-15!94;UBERON:0001016!1.39e-15!94;UBERON:0002780!3.95e-15!41;UBERON:0001890!3.95e-15!41;UBERON:0006240!3.95e-15!41;UBERON:0005743!5.33e-15!86;UBERON:0002616!1.60e-14!59;UBERON:0003080!2.80e-14!42;UBERON:0002346!3.26e-14!90;UBERON:0000955!3.69e-14!69;UBERON:0006238!3.69e-14!69;UBERON:0007023!2.04e-13!115;UBERON:0003075!4.02e-13!86;UBERON:0007284!4.02e-13!86;UBERON:0002020!2.55e-12!34;UBERON:0003528!2.55e-12!34;UBERON:0001893!2.88e-12!34;UBERON:0002791!5.37e-12!33;UBERON:0003056!9.92e-12!61;UBERON:0001869!2.25e-11!32;UBERON:0002619!1.57e-08!22;UBERON:0000956!2.16e-08!25;UBERON:0000203!2.16e-08!25;UBERON:0001950!3.64e-08!20;UBERON:0000924!5.74e-08!173;UBERON:0006601!5.74e-08!173;UBERON:0000153!1.03e-07!129;UBERON:0007811!1.03e-07!129;UBERON:0004121!3.17e-07!169;UBERON:0000033!6.92e-07!123 | |||
|ontology_enrichment_uberon_v019=UBERON:0000922;7.45e-11;49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,6.44e-10,89;UBERON:0001049,1.72e-09,56;UBERON:0005068,1.72e-09,56;UBERON:0006241,1.72e-09,56;UBERON:0007135,1.72e-09,56;UBERON:0001017,9.54e-09,81;UBERON:0000073,4.39e-08,53;UBERON:0002616,4.39e-08,53;UBERON:0002780,6.15e-08,41;UBERON:0001890,6.15e-08,41;UBERON:0003080,6.15e-08,41;UBERON:0006240,6.15e-08,41;UBERON:0000955,7.41e-07,68;UBERON:0006238,7.41e-07,68 | |||
|phase1_expression=0,0,0,1.0007329835313,0.893922188854576,0.872338524100369,0,0,0.261185628199839,0,0,0.218441372130172,0,0.247532705920093,0,0.672325146451775,0,0,0,0.61560529038394,0.204000691244253,0,0.572471974262113,0.273748850145768,0.251085279189606,0.152826811495903,0.0821005894499457,0,0,0.383829398097213,0.309632246632152,0,0.30120591877825,0.369754010166788,0.852139206383318,0,0.587200878669695,0.553995408531877,0.401088894940283,0.217010870715852,1.11957737119962,0.32389366601898,1.03030227053675,0.145398238779565,0.755751887377619,0.727752183563449,0.232429036905685,0,0.619412741790207,0,0,0.236482229888585,0,0.645484683583826,0,0.376484679085209,0.545812300115692,0.449446968890169,0.306083892370903,0.320929027076094,0,0,0.598390972864896,0.426224750532694,0.290209238628584,0,0,0,0.521482918420201,0.217188844705117,0,0.368277635987565,0.632924774881769,0.845021145247767,0.425208599930087,0.419317291016752,0.112328631146495,0.300353785683013,0.64290234678832,0,0,0.365328307529268,0,0,0,0.426730222566507,0,1.14950487990897,0,0,0,0,0.382273228125229,1.32171328579026,1.68152568894461,0.790152254325231,0.590129310341499,0.393010762749165,0,0.501559486172034,0,0,0,0.334231370655521,0,0.221533894583621,0.812411591295047,0.384273959177026,0.260118695119756,0.164437904603676,0,0.869409257205157,0.444859689486181,0.535081656179426,1.04535523804977,0.226618685395132,0.383220493601921,0.34362744548263,1.01207876807801,0,0,0,0.451725357233318,0.383959833463255,0,0.236777252044017,0,0.201606743224732,0.267440195783507,0,0,0,0.255725123687061,0,0,0,0.795285947051099,0,0.567208902984407,0.665188192387692,0.43917392846563,1.24430121722827,0.364295288292542,0.370784442784429,1.29818957461873,0.348259474598534,0.664789802594326,1.66943437013739,0.571994910780128,2.22874500797739,0.79504962946682,0,0,0,0.419499436209906,0,0.208994966536811,0,0.35576626268671,0.33472061276467,0,0,0.488124115096339,0.735326160691737,0,0.714397826272638,0.22452937262617,0.337834441449967,0,0,0,0,0,0,0.496971951695318,0.12663051166458,0.132409180813219,1.43418310374407,0,0.560677600142307,1.06748995729705,0.24666754841716,0,0.67355336034844,0,0.302714855289863,0.576175924479999,0.937285727335186,0,0,0,0.352303495931295,0.161872944368132,0,0.408308342509787,0.122834317311768,0,0,0,0.910161361938026,0,0,0,0.277064115484183,0.438977620880838,0,0,0.113432183160021,0,0,0,0,0.103052529238439,0,0.558350568994769,0.506328996723799,0.292311015483596,0.504867548488229,0.0920498986422993,0.969876340912871,0.355009592516614,0.503760491138201,0,0,0,0,0.365921118388786,0.662648841607426,0.348581828608555,1.14027160516907,0,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,0,0,0,1.32438929824395,0.614942192715568,0.171567810298526,0.109750285408626,0,0.100528972411631,0,0.977424915930974,0,0,0.463721619900307,0.234817388471643,0.577465791044295,0.462985512576611,0.380508304469197,0,0,1.23108503043699,0,0.445893486866185,0,0,0.283550194484773,0.0895585227028483,0,0,0.985326475791887,0.528290604079356,1.86595303986695,1.8735593944205,1.00993946741104,0.444485260045183,0,1.17217447210047,0,0.411309970813294,0.300343057843917,1.14330573052231,0.448524337381443,0,0.07333828582095,0.258543431515556,0,0,1.06375246633948,0,0,0,0,0,0,0,0,0,0,0.301439377059586,0,0.199945982364114,0,0.502257091432126,0,0,1.14861935834114,0,0.144781306667579,0.61642896765115,0.179060963239896,0,0.197030760201927,0,0.385029108839245,0.508189248444927,0,0.773288812777695,0.167516265334349,0.637938751653163,0,2.99161459204025,1.65766205374414,0.12269149171914,0,0.542530047399471,0.207970861530807,0,0.315404830067869,0.35142424497814,0,0,0,0,0.184369168541703,0.0868836144680828,0.587403472388222,0,0.206768026122887,0.431428401637234,0.320182673410333,0,0,0,0,0.767309866440312,0.280660094433074,0,0,0.321707842287215,0,0.154209693802656,0.177561725313127,0,0,0,0.241718899183244,0,0.920809889358963,0.114814448164607,0,0.262248829918848,0,0.231046011313244,0,0,0.105551628892876,0,0.340187410553031,0,0,0,0,0,0,0,0.438519753291869,0,0,0,0,0.721287081534056,0.27470839445503,0,0,0,0,0.193341436584244,0.924291702687866,0.15350367472613,0.137836572484531,0.214840489736547,0,0.340906509664404,0.623224249527161,0.165284915360978,0.192190067365106,1.02090169995667,0.2023155617111,0.464845549297286,1.25924938732256,0,0,0,0,0,0,0,0.632758849437452,0.190630193923825,0,0.42793898803392,0,0.78494864019923,0.179872457583315,0,0.353437207037059,0,0,0,0.48763373908959,0.731140468893853,0,0.409499734223957,0.141405431953713,0,0,0,0,0,0,0.202910376962704,0,0,0.143411352204052,0.392996164052485,0,0,0,0,0.379473173765715,0.349934720244983,0,0,0,0.941438007767792,0,0,0,0.459446800413919,0,0.764637207142375,0,0,0.411362273086194,0,1.08006287447623,0.79312517629427,0.427296284509893,0,0,0.185803175125719,0.577076851905779,1.06712765022621,0.318852545457645,0.399158742865633,0.191505370132367,0.635020748171649,1.62310970137278,0,0.228234679033192,0,0,0.677167111206413,0.1605880751037,0.201799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| ||
|short_description=p3@HMBOX1 | |||
}} | }} |
Latest revision as of 21:03, 17 September 2015
Short description: | p3@HMBOX1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_HMBOX1_5end |
Coexpression cluster: | NA |
Association with transcript: | 15bp_to_ENST00000519047, ENST00000521516_5end |
EntrezGene: | HMBOX1 |
HGNC: | 26137 |
UniProt: | E5RGZ2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
nervous system | 6.44e-10 | 89 |
neural tube | 1.72e-09 | 56 |
neural rod | 1.72e-09 | 56 |
future spinal cord | 1.72e-09 | 56 |
neural keel | 1.72e-09 | 56 |
central nervous system | 9.54e-09 | 81 |
regional part of nervous system | 4.39e-08 | 53 |
regional part of brain | 4.39e-08 | 53 |
regional part of forebrain | 6.15e-08 | 41 |
forebrain | 6.15e-08 | 41 |
anterior neural tube | 6.15e-08 | 41 |
future forebrain | 6.15e-08 | 41 |
brain | 7.41e-07 | 68 |
future brain | 7.41e-07 | 68 |
Ontology term | p-value | n |
---|---|---|
chronic leukemia | 7.99e-16 | 8 |
myeloid leukemia | 4.49e-07 | 31 |
germ cell and embryonal cancer | 7.43e-07 | 22 |
germ cell cancer | 7.43e-07 | 22 |
leukemia | 7.67e-07 | 39 |
neuroectodermal tumor | 8.89e-07 | 10 |