FFCP PHASE1:Hg19::chr7:27205089..27205096,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3205 | |EntrezGene=3205 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5109 | |HGNC=5109 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-18bp_to_ENST00000242050_5end | |association_with_transcript=-18bp_to_ENST00000242050_5end | ||
|cluster_id=chr7:27205089..27205096,- | |||
|coexpression_cluster_id=C4681 | |coexpression_cluster_id=C4681 | ||
|description=CAGE_peak_4_at_HOXA9_5end | |description=CAGE_peak_4_at_HOXA9_5end | ||
|id=chr7:27205089..27205096,- | |id=chr7:27205089..27205096,- | ||
|ontology_enrichment_celltype=CL:0002543;3.08e-18;6!CL:1000497;4.00e-16;17!CL:0002518;4.00e-16;17!CL:1000507;4.87e-16;10!CL:1000494;4.87e-16;10!CL:1000449;4.87e-14;15!CL:0002139;4.19e-08;24!CL:0002569;3.71e-07;6!CL:0002618;8.28e-07;3 | |ontology_enrichment_celltype=CL:1000497!1.43e-11!18;CL:0002518!1.43e-11!18;CL:1000507!1.78e-10!12;CL:1000494!1.78e-10!12;CL:1000449!5.52e-10!16;CL:0002543!4.96e-08!6;CL:0002139!8.76e-08!24;CL:0002620!2.04e-07!23;CL:0002681!4.62e-07!13;CL:0002584!4.62e-07!13;CL:0002078!9.78e-07!44 | ||
| | |ontology_enrichment_celltype_v019=CL:0002543;3.08e-18;6!CL:1000497;4.00e-16;17!CL:0002518;4.00e-16;17!CL:1000507;4.87e-16;10!CL:1000494;4.87e-16;10!CL:1000449;4.87e-14;15!CL:0002139;4.19e-08;24!CL:0002569;3.71e-07;6!CL:0002618;8.28e-07;3 | ||
|ontology_enrichment_disease=DOID:8692;5.23e-08;31 | |ontology_enrichment_celltype_v019_2=CL:0002543,1.97e-18,6;CL:1000497,5.33e-16,17;CL:0002518,5.33e-16,17;CL:1000507,7.14e-16,10;CL:1000494,7.14e-16,10;CL:1000449,6.20e-14,15;CL:0002139,3.27e-08,24;CL:0002569,3.61e-07,6;CL:0002618,6.55e-07,3 | ||
|ontology_enrichment_uberon=UBERON:0004211;4.87e-16;10!UBERON:0009773;4.87e-16;10!UBERON:0001231;4.87e-16;10!UBERON:0004810;4.87e-16;10!UBERON:0006555;4.87e-14;15!UBERON:0004819;4.87e-14;15!UBERON:0001285;4.87e-14;15!UBERON:0007684;4.87e-14;15!UBERON:0002113;4.90e-14;24!UBERON:0011143;4.90e-14;24!UBERON:0006554;1.96e-13;30!UBERON:0001008;1.96e-13;30!UBERON:0001638;4.36e-12;9!UBERON:0003920;4.36e-12;9!UBERON:0004582;4.36e-12;9!UBERON:0000489;2.46e-11;29!UBERON:0003422;3.71e-07;6 | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:8692;5.23e-08;31 | |||
|ontology_enrichment_disease_v019_2=DOID:8692,3.10e-08,31 | |||
|ontology_enrichment_uberon=UBERON:0001008!2.13e-20!45;UBERON:0006554!1.38e-19!44;UBERON:0002113!7.02e-12!27;UBERON:0003918!7.02e-12!27;UBERON:0005095!7.02e-12!27;UBERON:0007687!7.02e-12!27;UBERON:0000489!3.14e-11!32;UBERON:0003064!1.76e-10!37;UBERON:0009773!1.78e-10!12;UBERON:0001231!1.78e-10!12;UBERON:0004810!1.78e-10!12;UBERON:0001638!4.99e-10!9;UBERON:0003920!4.99e-10!9;UBERON:0004582!4.99e-10!9;UBERON:0004211!5.52e-10!16;UBERON:0001285!5.52e-10!16;UBERON:0007684!5.52e-10!16;UBERON:0003220!5.52e-10!16;UBERON:0004208!5.52e-10!16;UBERON:0006555!3.71e-09!17;UBERON:0005103!3.71e-09!17;UBERON:0000083!3.71e-09!17;UBERON:0009201!3.71e-09!17;UBERON:0004819!3.71e-09!17;UBERON:0006553!3.71e-09!17;UBERON:0003074!3.71e-09!17;UBERON:0003060!3.71e-09!17;UBERON:0000080!2.00e-08!18;UBERON:0002120!2.00e-08!18;UBERON:0004875!2.00e-08!18;UBERON:0005721!2.00e-08!18;UBERON:0005754!2.00e-08!18;UBERON:0007297!2.00e-08!18;UBERON:0003887!1.44e-07!21;UBERON:0004876!3.39e-07!20;UBERON:0001225!4.62e-07!13;UBERON:0008987!4.62e-07!13;UBERON:0005910!5.15e-07!6 | |||
|ontology_enrichment_uberon_v019=UBERON:0004211;4.87e-16;10!UBERON:0009773;4.87e-16;10!UBERON:0001231;4.87e-16;10!UBERON:0004810;4.87e-16;10!UBERON:0006555;4.87e-14;15!UBERON:0004819;4.87e-14;15!UBERON:0001285;4.87e-14;15!UBERON:0007684;4.87e-14;15!UBERON:0002113;4.90e-14;24!UBERON:0011143;4.90e-14;24!UBERON:0006554;1.96e-13;30!UBERON:0001008;1.96e-13;30!UBERON:0001638;4.36e-12;9!UBERON:0003920;4.36e-12;9!UBERON:0004582;4.36e-12;9!UBERON:0000489;2.46e-11;29!UBERON:0003422;3.71e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004810,7.14e-16,10;UBERON:0004211,6.20e-14,15;UBERON:0009773,6.20e-14,15;UBERON:0001231,6.20e-14,15;UBERON:0001285,6.20e-14,15;UBERON:0007684,6.20e-14,15;UBERON:0004208,6.20e-14,15;UBERON:0006555,5.28e-13,16;UBERON:0004819,5.28e-13,16;UBERON:0002113,1.00e-12,26;UBERON:0003918,1.00e-12,26;UBERON:0011143,1.00e-12,26;UBERON:0005095,1.00e-12,26;UBERON:0007687,1.00e-12,26;UBERON:0001638,3.26e-12,9;UBERON:0003920,3.26e-12,9;UBERON:0004582,3.26e-12,9;UBERON:0000489,2.05e-10,31;UBERON:0006554,7.21e-08,47;UBERON:0001008,1.15e-07,48;UBERON:0003422,3.61e-07,6 | |||
|phase1_expression=0.54503513781167,0,0,0,0,0,0,0,0.261185628199839,0,0,0,0,0.618831764800233,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293600439334847,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236482229888585,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16072558669708,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32171328579026,0,0.526768169550154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127986611154418,0,0,0,0,0,0,0,0,0,1.0843174571537,0.50133791063589,0.434539556882471,0.795285947051099,0.486634870302636,0,0,0,0,0,0,0.324547393654683,0,0,0,0,0,0,0,0,0,0,0,0.208994966536811,0,0,0.66944122552934,0.402829317109147,0.760272105718513,0.24406205754817,0,0.81014194788176,0.892997282840798,1.57170560838319,1.57656072676651,1.53316637465883,1.89853131913626,1.09921046358244,0,0,0.436094052142534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.298897361103602,0.352303495931295,0,0.280901613404497,0,0,0,0,0,0,1.43723628363248,0,0,0,0,0,0,0,0.358779271377724,0.427114777637135,0.211931901159562,0,0.515262646192195,0.772921620136887,0.37223371266318,0.168776332241266,0.584622030967192,0.504867548488229,0.368199594569197,0,0.355009592516614,0.806016785821122,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.368965315629341,0,0,0,1.40740561376283,0,0,0,0,0,0,1.87676382089396,0.925971025153221,1.33177906564219,0,0,0,0,0,0,0,0,0.985143749731331,0,0,0,0,0,0,0,0,0.381988425558278,0,0,0.102827492703324,0,0,0,0,0,0.387815147273333,0,0.845302752556,0.26593811658487,1.04007436911366,0.771622122786426,0,0.532844358032199,0,1.08524321078289,1.64648067356154,0.65147236858747,0,1.58390374586686,0,0,0,0,0,0,0,0,0,0,0.61642896765115,0,0.224170287987055,0,0,0,0,0,0,0,0,0,0,0,0.36807447515742,1.00034104211935,0.271265023699736,0,0,0,0,0,0,0,1.32845119707087,0.184369168541703,0.0868836144680828,0,0,0,0,0,0,0,0,0,0.153461973288062,0.561320188866147,0.128139149255701,0,0,0,0.154209693802656,0.177561725313127,0.0821271560138091,0,0,0.120859449591622,0.40101294060657,0.736647911487171,0.114814448164607,0.728364672026868,0,0.451199612907412,1.15523005656622,2.35304930753057,1.46139224653261,1.26661954671451,0,0.340187410553031,0.215915916102139,1.54227252690289,2.98041081298238,0.501689773854853,0.509752546090077,2.49322802678617,0.447749509444357,0,0,0,0,0,0,0.366277859273374,0.082509499920588,0,0.650060246036521,0,0.193341436584244,0,0,0.137836572484531,0.537101224341368,0.145016693914229,0.170453254832202,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179872457583315,0.274537029736055,0.353437207037059,0,0,0,0,0.974853958525138,0,0,0.282810863907425,0,0,0,0,0,0,0,0.6196469961995,0,0.717056761020258,0.491245205065606,0.35667105148125,0,0.211107635297664,0.329294892959902,0,0,0,0,0,0.0941438007767792,0.86101074534246,1.68471475667626,0.886860307073351,0.918893600827838,0,0,0,0,0,0,0,0,0.640944426764839,0,0,0,0,0,0,1.59663497146253,2.10655907145603,0.635020748171649,0,0.561594356226918,0.684704037099577,0,0,2.53937666702405,0.1605880751037,0.201799707191048,3.40676990152261,3.43505344755765,1.22896305723383,1.3420566473545,1.33479313369527,0.586164286206121,0,0,0,0,0,0.18714054040822,0.293016358543788,0,0,0.284136146806413,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.511572370226872,0.197286811273867,0,0,0,0,0,0,0,0.724999575434793,0,0,0,0,0,0.173624994933292,0,0,0,0,0,0,0,0.139423744278603,0.0769502585037971,0,0,0,0,0,0.183195186803725,0,0,0,0,0,0,0,0,0.158936578980379,0,2.44849212238722,0,0,0,0.265372693510018,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150323419414493,2.17745201934219,0,0,0,0,0.284609546029793,0,3.99187398170801,1.7638631534588,0.261177619741208,0,0.687944129886466,0,0,0,0,0,0,0.274083849293502,0,0,0,0,0,0,0,0,0.171594997861965,0,0,1.64985824231757,1.9026588850306,1.77824838730966,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670869375198532,0.236417121897595,0.472091293214983,0,0,0.191915197319445,0,0,0,0,0,0.326587360109409,0,0.574647645245373,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.655745261419609,0,0,0,0,0,0,0,0,0,0,0,0,0.468334905806882,0,0.149254802886874,0,0,0.189403005275089,0,0.889811221596536,0,0,0,0,0,0,0,0,0,0,0,0.380805212168795,0.406870733204662,0,0.107410557042488,0,0,0,0.343395705182793,0,0,0,0,0,0,0,0.244736704506468,0,0,0,0,0,0,0,0,0,0,0,0,0,0.327609848846413,0,0,0,0.853533837553127,0,0,1.10463570151104,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.381382095467167,0,0,0.0752103283492573,0.60511520611056,0,0,0,0.147856086217045,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,0,0,0,0,0.444925607568277,0.39246546425257,0,0,0.913158720509496,0.215927591218621,3.34426181520935,0,0,0,0,0,0,0,0,0,0.354996002191696,0.596493833314104,0,0,0,0,0,0,0,0.647428837187895,0.410651227424988,0,0,0,0.795803100645473,0.118920090777569,3.9531128713636,0,0,0,0.218559560503957,2.82190377816914,0.245148321753905,0.235676547101626,0,0,0,0.339854229375634,0.0939839179798536,0,0,1.60698544745092,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151557396436479,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.651226148887796,0.320182037633146,0,0,0,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0.977931553462932,0.406896178315738,0.665756774185513,0.201273793591026,0 | ||
|short_description=p4@HOXA9 | |short_description=p4@HOXA9 | ||
}} | }} |
Latest revision as of 01:42, 18 September 2015
Short description: | p4@HOXA9 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_HOXA9_5end |
Coexpression cluster: | C4681_smallcell_acute_small_clear_renal_endometrioid_embryonic |
Association with transcript: | -18bp_to_ENST00000242050_5end |
EntrezGene: | HOXA9 |
HGNC: | 5109 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
vein endothelial cell | 1.97e-18 | 6 |
kidney cell | 5.33e-16 | 17 |
kidney epithelial cell | 5.33e-16 | 17 |
kidney tubule cell | 7.14e-16 | 10 |
nephron tubule epithelial cell | 7.14e-16 | 10 |
epithelial cell of nephron | 6.20e-14 | 15 |
endothelial cell of vascular tree | 3.27e-08 | 24 |
mesenchymal stem cell of umbilical cord | 3.61e-07 | 6 |
endothelial cell of umbilical vein | 6.55e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
nephron tubule epithelium | 7.14e-16 | 10 |
nephron epithelium | 6.20e-14 | 15 |
renal tubule | 6.20e-14 | 15 |
nephron tubule | 6.20e-14 | 15 |
nephron | 6.20e-14 | 15 |
uriniferous tubule | 6.20e-14 | 15 |
nephrogenic mesenchyme | 6.20e-14 | 15 |
excretory tube | 5.28e-13 | 16 |
kidney epithelium | 5.28e-13 | 16 |
kidney | 1.00e-12 | 26 |
kidney mesenchyme | 1.00e-12 | 26 |
upper urinary tract | 1.00e-12 | 26 |
kidney rudiment | 1.00e-12 | 26 |
kidney field | 1.00e-12 | 26 |
vein | 3.26e-12 | 9 |
venous blood vessel | 3.26e-12 | 9 |
venous system | 3.26e-12 | 9 |
cavitated compound organ | 2.05e-10 | 31 |
urinary system structure | 7.21e-08 | 47 |
renal system | 1.15e-07 | 48 |
mesenchyme of umbilical cord | 3.61e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
myeloid leukemia | 3.10e-08 | 31 |