FFCP PHASE1:Hg19::chr19:41257173..41257187,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6626 | |EntrezGene=6626 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11151 | |HGNC=11151 | ||
|TSSclassifier=strong | |||
|UniProt=B4DDC7 | |UniProt=B4DDC7 | ||
|association_with_transcript=47bp_to_ENST00000545469_5end | |association_with_transcript=47bp_to_ENST00000545469_5end | ||
|cluster_id=chr19:41257173..41257187,+ | |||
|coexpression_cluster_id=C3793 | |||
|description=CAGE_peak_4_at_SNRPA_5end | |description=CAGE_peak_4_at_SNRPA_5end | ||
|id=chr19:41257173..41257187,+ | |id=chr19:41257173..41257187,+ | ||
|ontology_enrichment_celltype=CL:0000066!1.01e-23!254;CL:0000012!2.38e-17!682;CL:0000548!2.79e-17!679;CL:0000004!2.79e-17!679;CL:0000255!2.79e-17!679;CL:0000003!7.97e-12!722;CL:0002321!7.01e-11!248;CL:0000220!2.95e-10!246;CL:0000063!1.37e-07!578;CL:0000076!8.83e-07!62;CL:0002319!9.19e-07!25 | |ontology_enrichment_celltype=CL:0000066!1.01e-23!254;CL:0000012!2.38e-17!682;CL:0000548!2.79e-17!679;CL:0000004!2.79e-17!679;CL:0000255!2.79e-17!679;CL:0000003!7.97e-12!722;CL:0002321!7.01e-11!248;CL:0000220!2.95e-10!246;CL:0000063!1.37e-07!578;CL:0000076!8.83e-07!62;CL:0002319!9.19e-07!25 | ||
|ontology_enrichment_celltype_v019=CL:1000449;2.85e-07;15!CL:0002319;7.90e-07;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,3.20e-24,253;CL:0002321,9.57e-11,250;CL:1000449,2.89e-07,15;CL:0002319,9.18e-07,25 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!3.17e-41!235;DOID:14566!1.84e-39!239;DOID:0050687!1.38e-22!143;DOID:305!1.12e-18!106;DOID:0050686!5.13e-18!137;DOID:2531!4.79e-15!51;DOID:0060083!4.79e-15!51;DOID:1240!3.07e-12!39;DOID:8692!4.62e-10!31;DOID:3095!4.80e-09!22;DOID:2994!4.80e-09!22 | |||
|ontology_enrichment_disease_v019=DOID:8692;1.01e-09;31!DOID:1240;1.05e-09;39!DOID:2531;2.95e-09;51!DOID:0060083;2.95e-09;51!DOID:3095;3.92e-09;22!DOID:2994;3.92e-09;22!DOID:305;5.16e-07;106 | |||
|ontology_enrichment_disease_v019_2=DOID:162,3.28e-41,235;DOID:14566,1.90e-39,239;DOID:0050687,1.37e-22,143;DOID:305,1.11e-18,106;DOID:0050686,5.29e-18,137;DOID:2531,4.78e-15,51;DOID:0060083,4.78e-15,51;DOID:1240,3.06e-12,39;DOID:8692,4.61e-10,31;DOID:3095,4.79e-09,22;DOID:2994,4.79e-09,22 | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019=UBERON:0006555;2.85e-07;15!UBERON:0004819;2.85e-07;15!UBERON:0001285;2.85e-07;15!UBERON:0007684;2.85e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004211,2.89e-07,15;UBERON:0009773,2.89e-07,15;UBERON:0001231,2.89e-07,15;UBERON:0001285,2.89e-07,15;UBERON:0007684,2.89e-07,15;UBERON:0004208,2.89e-07,15 | |||
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| ||
|short_description=p4@SNRPA | |short_description=p4@SNRPA | ||
}} | }} |
Latest revision as of 02:56, 18 September 2015
Short description: | p4@SNRPA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_SNRPA_5end |
Coexpression cluster: | C3793_iPS_testicular_Alveolar_Burkitt_transitionalcell_neuroblastoma_small |
Association with transcript: | 47bp_to_ENST00000545469_5end |
EntrezGene: | SNRPA |
HGNC: | 11151 |
UniProt: | B4DDC7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 3.20e-24 | 253 |
embryonic cell | 9.57e-11 | 250 |
epithelial cell of nephron | 2.89e-07 | 15 |
neural cell | 9.18e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
nephron epithelium | 2.89e-07 | 15 |
renal tubule | 2.89e-07 | 15 |
nephron tubule | 2.89e-07 | 15 |
nephron | 2.89e-07 | 15 |
uriniferous tubule | 2.89e-07 | 15 |
nephrogenic mesenchyme | 2.89e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
cancer | 3.28e-41 | 235 |
disease of cellular proliferation | 1.90e-39 | 239 |
cell type cancer | 1.37e-22 | 143 |
carcinoma | 1.11e-18 | 106 |
organ system cancer | 5.29e-18 | 137 |
hematologic cancer | 4.78e-15 | 51 |
immune system cancer | 4.78e-15 | 51 |
leukemia | 3.06e-12 | 39 |
myeloid leukemia | 4.61e-10 | 31 |
germ cell and embryonal cancer | 4.79e-09 | 22 |
germ cell cancer | 4.79e-09 | 22 |