FFCP PHASE1:Hg19::chr2:173600214..173600253,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DPIdataset= | |DHSsupport=supported | ||
|DPIdataset=robust | |||
|EntrezGene=11069 | |EntrezGene=11069 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC=16626 | |HGNC=16626 | ||
|TSSclassifier= | |TSSclassifier=strong | ||
|UniProt=E7EVE5,Q8WZA2 | |UniProt=E7EVE5,Q8WZA2 | ||
|association_with_transcript=-271bp_to_ENST00000264111,NM_007023,uc002uhu.2,uc002uhv.3_5end | |association_with_transcript=-271bp_to_ENST00000264111,NM_007023,uc002uhu.2,uc002uhv.3_5end | ||
|cluster_id=chr2:173600214..173600253,+ | |||
|coexpression_cluster_id=C3 | |coexpression_cluster_id=C3 | ||
|description=CAGE_peak_7_at_RAPGEF4_5end | |description=CAGE_peak_7_at_RAPGEF4_5end | ||
Latest revision as of 05:32, 18 September 2015
| Short description: | p7@RAPGEF4 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_7_at_RAPGEF4_5end |
| Coexpression cluster: | C3_occipital_temporal_insula_medial_postcentral_frontal_amygdala |
| Association with transcript: | -271bp_to_ENST00000264111, NM_007023, uc002uhu.2, uc002uhv.3_5end |
| EntrezGene: | RAPGEF4 |
| HGNC: | 16626 |
| UniProt: | E7EVE5Q8WZA2 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p7@RAPGEF4 |
|---|
0.0
2.5
5.0
7.5
10.0
12.5
15.0
17.5
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| cerebral hemisphere | 3.84e-120 | 32 |
| telencephalon | 5.30e-113 | 34 |
| regional part of telencephalon | 5.30e-111 | 32 |
| regional part of forebrain | 1.52e-108 | 41 |
| forebrain | 1.52e-108 | 41 |
| anterior neural tube | 1.52e-108 | 41 |
| future forebrain | 1.52e-108 | 41 |
| brain grey matter | 2.18e-104 | 34 |
| gray matter | 2.18e-104 | 34 |
| regional part of cerebral cortex | 1.75e-102 | 22 |
Showing 1 to 10 of 82 entries
| Ontology term | p-value | n |
|---|---|---|
| skin squamous cell carcinoma | 4.90e-07 | 1 |
| keratoacanthoma | 4.90e-07 | 1 |
Showing 1 to 2 of 2 entries
