FFCP PHASE1:Hg19::chr2:70780951..70780966,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7039 | |EntrezGene=7039 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11765 | |HGNC=11765 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000418333,ENST00000460808_5end | |association_with_transcript=0bp_to_ENST00000418333,ENST00000460808_5end | ||
|cluster_id=chr2:70780951..70780966,- | |||
|coexpression_cluster_id=C356 | |coexpression_cluster_id=C356 | ||
|description=CAGE_peak_1_at_TGFA_5end | |description=CAGE_peak_1_at_TGFA_5end | ||
|id=chr2:70780951..70780966,- | |id=chr2:70780951..70780966,- | ||
|ontology_enrichment_celltype=CL:0000066!2.12e-19!254;CL:0002076!6.06e-15!43;CL:0000223!8.16e-15!59;CL:0002368!2.12e-08!13 | |ontology_enrichment_celltype=CL:0000066!2.12e-19!254;CL:0002076!6.06e-15!43;CL:0000223!8.16e-15!59;CL:0002368!2.12e-08!13 | ||
|ontology_enrichment_celltype_v019=CL:0002076;1.65e-12;42!CL:0002368;6.29e-09;13!CL:0002251;6.06e-07;20 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,4.32e-22,253;CL:0002076,6.85e-17,42;CL:0000223,2.31e-16,58;CL:0002368,6.67e-09,13;CL:0002251,6.69e-07,20 | |||
|ontology_enrichment_development_v019=CL:0000223;5.03e-09;58 | |||
|ontology_enrichment_disease=DOID:305!1.16e-13!106;DOID:0050687!8.36e-09!143;DOID:299!8.34e-08!25;DOID:1749!9.37e-08!14 | |ontology_enrichment_disease=DOID:305!1.16e-13!106;DOID:0050687!8.36e-09!143;DOID:299!8.34e-08!25;DOID:1749!9.37e-08!14 | ||
|ontology_enrichment_disease_v019=DOID:1749;9.50e-09;14!DOID:299;1.62e-08;25 | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.39e-13,106;DOID:1749,1.27e-08,14;DOID:299,1.51e-08,25;DOID:0050687,2.95e-08,143 | |||
|ontology_enrichment_uberon=UBERON:0007023!2.47e-13!115;UBERON:0000467!2.73e-13!625;UBERON:0000480!3.02e-13!626;UBERON:0000468!1.61e-12!659;UBERON:0004111!7.62e-11!241;UBERON:0000922!2.04e-10!612;UBERON:0004119!6.71e-10!169;UBERON:0000925!6.71e-10!169;UBERON:0006595!6.71e-10!169;UBERON:0002050!7.90e-10!605;UBERON:0005423!7.90e-10!605;UBERON:0000062!1.13e-09!511;UBERON:0000923!1.44e-09!604;UBERON:0005291!1.44e-09!604;UBERON:0006598!1.44e-09!604;UBERON:0002532!1.44e-09!604;UBERON:0000475!5.73e-09!365;UBERON:0001049!2.25e-08!57;UBERON:0005068!2.25e-08!57;UBERON:0006241!2.25e-08!57;UBERON:0007135!2.25e-08!57;UBERON:0000025!2.50e-08!194;UBERON:0005177!4.68e-08!107;UBERON:0005911!7.72e-08!82;UBERON:0002780!2.80e-07!41;UBERON:0001890!2.80e-07!41;UBERON:0006240!2.80e-07!41;UBERON:0001007!3.97e-07!155;UBERON:0001555!3.97e-07!155;UBERON:0007026!3.97e-07!155;UBERON:0001893!6.25e-07!34;UBERON:0000477!6.95e-07!286;UBERON:0002020!7.21e-07!34;UBERON:0003528!7.21e-07!34;UBERON:0003080!8.82e-07!42;UBERON:0002791!9.88e-07!33 | |ontology_enrichment_uberon=UBERON:0007023!2.47e-13!115;UBERON:0000467!2.73e-13!625;UBERON:0000480!3.02e-13!626;UBERON:0000468!1.61e-12!659;UBERON:0004111!7.62e-11!241;UBERON:0000922!2.04e-10!612;UBERON:0004119!6.71e-10!169;UBERON:0000925!6.71e-10!169;UBERON:0006595!6.71e-10!169;UBERON:0002050!7.90e-10!605;UBERON:0005423!7.90e-10!605;UBERON:0000062!1.13e-09!511;UBERON:0000923!1.44e-09!604;UBERON:0005291!1.44e-09!604;UBERON:0006598!1.44e-09!604;UBERON:0002532!1.44e-09!604;UBERON:0000475!5.73e-09!365;UBERON:0001049!2.25e-08!57;UBERON:0005068!2.25e-08!57;UBERON:0006241!2.25e-08!57;UBERON:0007135!2.25e-08!57;UBERON:0000025!2.50e-08!194;UBERON:0005177!4.68e-08!107;UBERON:0005911!7.72e-08!82;UBERON:0002780!2.80e-07!41;UBERON:0001890!2.80e-07!41;UBERON:0006240!2.80e-07!41;UBERON:0001007!3.97e-07!155;UBERON:0001555!3.97e-07!155;UBERON:0007026!3.97e-07!155;UBERON:0001893!6.25e-07!34;UBERON:0000477!6.95e-07!286;UBERON:0002020!7.21e-07!34;UBERON:0003528!7.21e-07!34;UBERON:0003080!8.82e-07!42;UBERON:0002791!9.88e-07!33 | ||
|ontology_enrichment_uberon_v019= | |||
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| ||
|short_description=p1@TGFA | |short_description=p1@TGFA | ||
}} | }} |
Latest revision as of 06:55, 18 September 2015
Short description: | p1@TGFA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TGFA_5end |
Coexpression cluster: | C356_renal_Smooth_Chondrocyte_thyroid_serous_Small_mesenchymal |
Association with transcript: | 0bp_to_ENST00000418333, ENST00000460808_5end |
EntrezGene: | TGFA |
HGNC: | 11765 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 4.32e-22 | 253 |
endo-epithelial cell | 6.85e-17 | 42 |
endodermal cell | 2.31e-16 | 58 |
respiratory epithelial cell | 6.67e-09 | 13 |
epithelial cell of alimentary canal | 6.69e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
anatomical conduit | 9.42e-12 | 240 |
adult organism | 1.54e-11 | 114 |
embryo | 6.86e-10 | 592 |
tube | 2.17e-09 | 192 |
endoderm-derived structure | 4.15e-09 | 160 |
endoderm | 4.15e-09 | 160 |
presumptive endoderm | 4.15e-09 | 160 |
neural tube | 7.00e-09 | 56 |
neural rod | 7.00e-09 | 56 |
future spinal cord | 7.00e-09 | 56 |
neural keel | 7.00e-09 | 56 |
developing anatomical structure | 1.20e-08 | 581 |
organ system subdivision | 1.29e-08 | 223 |
ecto-epithelium | 1.31e-08 | 104 |
trunk region element | 2.47e-08 | 101 |
regional part of nervous system | 5.07e-08 | 53 |
regional part of brain | 5.07e-08 | 53 |
endo-epithelium | 2.93e-07 | 82 |
epithelium | 4.50e-07 | 306 |
regional part of forebrain | 5.01e-07 | 41 |
forebrain | 5.01e-07 | 41 |
anterior neural tube | 5.01e-07 | 41 |
future forebrain | 5.01e-07 | 41 |
telencephalon | 8.47e-07 | 34 |
brain grey matter | 9.84e-07 | 34 |
gray matter | 9.84e-07 | 34 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.39e-13 | 106 |
squamous cell carcinoma | 1.27e-08 | 14 |
adenocarcinoma | 1.51e-08 | 25 |
cell type cancer | 2.95e-08 | 143 |