FFCP PHASE1:Hg19::chr2:176994408..176994492,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3234 | |EntrezGene=3234 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5139 | |HGNC=5139 | ||
|TSSclassifier=strong | |||
|UniProt=P13378,F8WBG7,Q8IXZ1 | |UniProt=P13378,F8WBG7,Q8IXZ1 | ||
|association_with_transcript=0bp_to_ENST00000313173,ENST00000429017,NM_001199746,NM_001199747,NM_019558,uc002ukn.2,uc002uko.2,uc002ukp.2_5end | |association_with_transcript=0bp_to_ENST00000313173,ENST00000429017,NM_001199746,NM_001199747,NM_019558,uc002ukn.2,uc002uko.2,uc002ukp.2_5end | ||
|cluster_id=chr2:176994408..176994492,+ | |||
|description=CAGE_peak_1_at_HOXD8_5end | |description=CAGE_peak_1_at_HOXD8_5end | ||
|id=chr2:176994408..176994492,+ | |id=chr2:176994408..176994492,+ | ||
|ontology_enrichment_celltype=CL:1000497!3.02e-09!18;CL:0002518!3.02e-09!18;CL:0002620!7.96e-09!23;CL:1000449!6.36e-08!16;CL:1000507!5.29e-07!12;CL:1000494!5.29e-07!12;CL:0000055!7.28e-07!180;CL:0002078!9.88e-07!44 | |ontology_enrichment_celltype=CL:1000497!3.02e-09!18;CL:0002518!3.02e-09!18;CL:0002620!7.96e-09!23;CL:1000449!6.36e-08!16;CL:1000507!5.29e-07!12;CL:1000494!5.29e-07!12;CL:0000055!7.28e-07!180;CL:0002078!9.88e-07!44 | ||
|ontology_enrichment_celltype_v019=CL:1000497;1.69e-11;17!CL:0002518;1.69e-11;17!CL:1000449;5.37e-10;15!CL:0002620;4.23e-09;23!CL:1000507;2.06e-08;10!CL:1000494;2.06e-08;10!CL:0002681;6.16e-08;12!CL:0002584;6.16e-08;12 | |||
|ontology_enrichment_celltype_v019_2=CL:1000497,1.62e-11,17;CL:0002518,1.62e-11,17;CL:1000449,5.50e-10,15;CL:0002620,3.60e-09,23;CL:1000507,2.01e-08,10;CL:1000494,2.01e-08,10;CL:0002681,6.86e-08,12;CL:0002584,6.86e-08,12;CL:0002078,7.12e-08,45 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:120;2.79e-07;27!DOID:193;6.97e-07;29 | |||
|ontology_enrichment_disease_v019_2=DOID:120,2.38e-07,27;DOID:193,6.29e-07,29 | |||
|ontology_enrichment_uberon=UBERON:0000489!3.31e-13!32;UBERON:0001008!1.19e-12!45;UBERON:0002199!1.80e-12!45;UBERON:0002416!1.80e-12!45;UBERON:0006554!4.27e-12!44;UBERON:0002113!1.67e-11!27;UBERON:0003918!1.67e-11!27;UBERON:0005095!1.67e-11!27;UBERON:0007687!1.67e-11!27;UBERON:0002097!3.63e-11!40;UBERON:0004876!3.17e-10!20;UBERON:0000080!2.43e-09!18;UBERON:0002120!2.43e-09!18;UBERON:0004875!2.43e-09!18;UBERON:0005721!2.43e-09!18;UBERON:0005754!2.43e-09!18;UBERON:0007297!2.43e-09!18;UBERON:0003064!4.07e-09!37;UBERON:0003887!6.10e-09!21;UBERON:0006555!1.28e-08!17;UBERON:0005103!1.28e-08!17;UBERON:0000083!1.28e-08!17;UBERON:0009201!1.28e-08!17;UBERON:0004819!1.28e-08!17;UBERON:0006553!1.28e-08!17;UBERON:0003074!1.28e-08!17;UBERON:0003060!1.28e-08!17;UBERON:0003133!2.36e-08!48;UBERON:0005156!3.71e-08!59;UBERON:0000990!3.71e-08!59;UBERON:0004211!6.36e-08!16;UBERON:0001285!6.36e-08!16;UBERON:0007684!6.36e-08!16;UBERON:0003220!6.36e-08!16;UBERON:0004208!6.36e-08!16;UBERON:0003886!1.31e-07!63;UBERON:0009773!5.29e-07!12;UBERON:0001231!5.29e-07!12;UBERON:0004810!5.29e-07!12;UBERON:0002100!8.96e-07!216 | |||
|ontology_enrichment_uberon_v019=UBERON:0006554;9.74e-15;30!UBERON:0001008;9.74e-15;30!UBERON:0000489;2.03e-14;29!UBERON:0002113;1.78e-12;24!UBERON:0011143;1.78e-12;24!UBERON:0006555;5.37e-10;15!UBERON:0004819;5.37e-10;15!UBERON:0001285;5.37e-10;15!UBERON:0007684;5.37e-10;15!UBERON:0002097;3.93e-09;41!UBERON:0004211;2.06e-08;10!UBERON:0009773;2.06e-08;10!UBERON:0001231;2.06e-08;10!UBERON:0004810;2.06e-08;10!UBERON:0002199;2.15e-08;46!UBERON:0002416;2.15e-08;46!UBERON:0001225;6.16e-08;12!UBERON:0008987;6.16e-08;12!UBERON:0001013;2.76e-07;14!UBERON:0001851;3.20e-07;15!UBERON:0003102;4.88e-07;50!UBERON:0001473;8.80e-07;8!UBERON:0004536;8.80e-07;8!UBERON:0006558;8.80e-07;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000489,6.37e-16,31;UBERON:0002113,4.95e-14,26;UBERON:0003918,4.95e-14,26;UBERON:0011143,4.95e-14,26;UBERON:0005095,4.95e-14,26;UBERON:0007687,4.95e-14,26;UBERON:0002199,2.13e-13,46;UBERON:0002416,2.13e-13,46;UBERON:0002097,6.17e-12,41;UBERON:0001008,6.77e-12,48;UBERON:0006554,2.56e-11,47;UBERON:0006555,8.54e-11,16;UBERON:0004819,8.54e-11,16;UBERON:0004211,5.50e-10,15;UBERON:0009773,5.50e-10,15;UBERON:0001231,5.50e-10,15;UBERON:0001285,5.50e-10,15;UBERON:0007684,5.50e-10,15;UBERON:0004208,5.50e-10,15;UBERON:0004810,2.01e-08,10;UBERON:0001225,6.86e-08,12;UBERON:0008987,6.86e-08,12;UBERON:0003133,1.36e-07,48;UBERON:0001851,3.46e-07,15;UBERON:0005156,3.99e-07,59;UBERON:0000990,3.99e-07,59;UBERON:0001013,4.19e-07,14;UBERON:0004876,6.18e-07,11;UBERON:0001473,9.55e-07,8;UBERON:0004536,9.55e-07,8;UBERON:0006558,9.55e-07,8 | |||
|phase1_expression=8.3572054464456,8.99222200342129,0.986680828671798,4.00293193412522,2.68176656656373,6.10636966870258,5.06599756336621,5.68547886084148,2.08948502559871,0,0,0,0,3.09415882400117,1.32558950291166,0,0,0,0.487932798790507,0.123121058076788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111410456885174,0,0,0,0,0,0,0,0,0,0.267540828089713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.87613732627923,0,0,6.86734389530676,5.0133791063589,9.27017721349272,1.5905718941022,5.35298357332899,0,0,0.175669571386252,10.6093051153147,0,0,0,0,0.132957960518865,0,0,0,0,1.72046919021225,0,0,0,0.275118041940067,1.25396979922086,7.49408601591054,6.75955899104749,9.0374565446461,5.23678112241891,7.60272105718513,16.3521578557274,9.92690316933846,5.67099363517232,8.75137337183982,9.20570427767296,8.55847251673249,4.5994991239765,2.84779697870439,4.946447086121,0,0,0,4.96971951695318,0,0,0,0.709336764396714,0,0,0,0,0.269421344139376,0.163461903113459,0,0,0,4.68240115245481,1.71141546463335,6.42629326372745,9.51219439014496,8.7411389958791,9.5506548557529,0,0,0,0,0,14.5625817910084,10.0606539854273,0,0,0,0,0.30648779579902,0.300476117813194,0.226864366320042,4.12596162084383,12.3863285514769,6.78182083710598,3.30100205692843,8.86251751450575,5.41045134095821,9.86419338557426,3.71307930930786,10.0360115316035,3.02920529092937,9.48113956015683,0.323292113637624,5.68015348026583,9.47069723339819,1.3564847384839,0,0,0,0,0,0.116193942869518,0,0,0,4.69348596989448,10.2918550110862,6.90674606762403,15.3241416250553,14.4375896333917,1.77460200059766,2.19160097101532,2.16909926895134,1.98529150918309,1.74303555273925,1.89816495288877,1.48314438976181,0.98110732562673,0.769494313892781,0.738155454624648,4.20725321410337,1.6462960453256,4.41026134156626,0,0,0.590789906681404,0,0,0,0,0,0.100528972411631,0,0,0,0,0,0,10.3943842387973,17.5934494779112,12.3665198952489,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0,0.12624243342638,7.42925363218378,7.63976851116555,7.03304683260282,8.55362230113526,3.08482478109971,8.10926256178577,6.28818151787272,0.112131084345361,0,0.22001485746285,1.68053230485111,35.7656445851882,4.22651376278,3.72313363218819,0,5.65856223376713,8.5109479213967,6.66055447540248,0.57191197463259,5.96883765930587,9.05564370458846,5.21177894869976,0,5.543663110534,0.602878754119172,2.61460037580088,0,0,0,0,0,0,2.85273810081437,2.17171960001369,0.205476322550383,3.40215830155802,0,0,0,0,0,0,0,0,0,0,0,0,3.80343624329334,4.00136416847742,1.08506009479894,0,0,0,0,5.41702979509894,9.09630016223939,10.3473071292505,7.3064815838898,4.60922921354258,0.173767228936166,0,0,0,0,0,0.303127571446259,0,0.30239029332968,10.4205279283886,4.45039722535381,7.57782254969299,1.15325234330131,4.09365799253363,0.64341568457443,4.45254199334973,4.78050050788232,7.63515418846446,8.37696991340853,0.519254429183621,6.15915005837784,0.120859449591622,3.80962293576241,17.0349829531408,0,0,2.62248829918848,14.4383876130372,8.24064107017238,10.980896768476,13.1525302187935,9.60519822925169,13.6480060885076,8.33459155854927,10.3639639729027,12.3381802152231,6.23176806350862,11.5388647986616,13.7633187444321,13.2972161428596,12.536986264442,0.219259876645935,0.261435451024901,0,0,0,2.06082023295445,1.64825036673018,1.32015199872941,0.574265537996172,0,8.03419649220798,8.50702320970673,7.70243085573222,7.52168006158035,5.51346289938122,10.204923262486,5.94568445048337,6.47722368362367,5.51998621009772,0.165284915360978,0.192190067365106,0,0,0,0,0,0.616067160352178,0.532306030317022,0,0.74129687641568,0,0,0.316379424718726,0,0,0,0,0.78494864019923,4.31693898199955,3.29444435683266,1.88499843753098,0.202182481573316,0,0.421258456238981,0,2.43713489631284,3.16950440270266,2.18399858252777,1.55545975149084,0,3.30819206127675,0,0,0.578775534266688,0,0.202910376962704,1.54911749049875,0.281695602532241,3.72869515730534,4.02821068153797,0.35667105148125,0.354761064070598,9.28873595309722,8.56166721695745,0,0,0,0,0,2.2594512186427,6.45758059006845,10.1082885400575,7.98174276366016,7.3511488066227,0,0,0,0,0,0,0,0,1.28188885352968,3.84991942105343,0,0,0,0,3.50737800003409,0,0,0,0,0,0,0,0,1.52362600021443,0,0,0,0,0.307240764308458,0,0,0,0,0,0,0,0,0,10.2555725490326,5.09714191347956,0,0,0,0,0,0,0,0,0.824019371133798,0,6.97367958878744,2.48655523978033,12.0927718970052,0,0,5.59871257791253,0,0,0,5.22810049875748,0,3.33410970433911,0,0,0,0,0.962059999958153,6.52499617891314,0,0,21.0385036773463,7.58435421131222,12.8306029888632,3.99337488346572,0,0,0,0,0,0,0,6.83176346965156,9.38793153746324,0,1.38338342632836,1.43612231055635,2.82483166997221,0.638002319463839,3.02272058226146,0.533034776018635,0,0,0,0,0,0,0,0,4.64195741961659,2.61172493054636,0,5.40971599355228,8.95735737970654,5.48436899920703,10.9985426088053,0,0,0,0.202203398942031,7.2231988256891,0,0,0,0,37.0909338678427,3.62972148145992,0,0.947798694427319,3.30711522711884,5.08072137846511,0,0,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|phase1_expression=8.3572054464456,8.99222200342129,0.986680828671798,4.00293193412522,2.68176656656373,6.10636966870258,5.06599756336621,5.68547886084148,2.08948502559871,0,0,0,0,3.09415882400117,1.32558950291166,0,0,0,0.487932798790507,0.123121058076788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111410456885174,0,0,0,0,0,0,0,0,0,0.267540828089713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.87613732627923,0,0,6.86734389530676,5.0133791063589,9.27017721349272,1.5905718941022,5.35298357332899,0,0,0.175669571386252,10.6093051153147,0,0,0,0,0.132957960518865,0,0,0,0,1.72046919021225,0,0,0,0.275118041940067,1.25396979922086,7.49408601591054,6.75955899104749,9.0374565446461,5.23678112241891,7.60272105718513,16.3521578557274,9.92690316933846,5.67099363517232,8.75137337183982,9.20570427767296,8.55847251673249,4.5994991239765,2.84779697870439,4.946447086121,0,0,0,4.96971951695318,0,0,0,0.709336764396714,0,0,0,0,0.269421344139376,0.163461903113459,0,0,0,4.68240115245481,1.71141546463335,6.42629326372745,9.51219439014496,8.7411389958791,9.5506548557529,0,0,0,0,0,14.5625817910084,10.0606539854273,0,0,0,0,0.30648779579902,0.300476117813194,0.226864366320042,4.12596162084383,12.3863285514769,6.78182083710598,3.30100205692843,8.86251751450575,5.41045134095821,9.86419338557426,3.71307930930786,10.0360115316035,3.02920529092937,9.48113956015683,0.323292113637624,5.68015348026583,9.47069723339819,1.3564847384839,0,0,0,0,0,0.116193942869518,0,0,0,4.69348596989448,10.2918550110862,6.90674606762403,15.3241416250553,14.4375896333917,1.77460200059766,2.19160097101532,2.16909926895134,1.98529150918309,1.74303555273925,1.89816495288877,1.48314438976181,0.98110732562673,0.769494313892781,0.738155454624648,4.20725321410337,1.6462960453256,4.41026134156626,0,0,0.590789906681404,0,0,0,0,0,0.100528972411631,0,0,0,0,0,0,10.3943842387973,17.5934494779112,12.3665198952489,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0,0.12624243342638,7.42925363218378,7.63976851116555,7.03304683260282,8.55362230113526,3.08482478109971,8.10926256178577,6.28818151787272,0.112131084345361,0,0.22001485746285,1.68053230485111,35.7656445851882,4.22651376278,3.72313363218819,0,5.65856223376713,8.5109479213967,6.66055447540248,0.57191197463259,5.96883765930587,9.05564370458846,5.21177894869976,0,5.543663110534,0.602878754119172,2.61460037580088,0,0,0,0,0,0,2.85273810081437,2.17171960001369,0.205476322550383,3.40215830155802,0,0,0,0,0,0,0,0,0,0,0,0,3.80343624329334,4.00136416847742,1.08506009479894,0,0,0,0,5.41702979509894,9.09630016223939,10.3473071292505,7.3064815838898,4.60922921354258,0.173767228936166,0,0,0,0,0,0.303127571446259,0,0.30239029332968,10.4205279283886,4.45039722535381,7.57782254969299,1.15325234330131,4.09365799253363,0.64341568457443,4.45254199334973,4.78050050788232,7.63515418846446,8.37696991340853,0.519254429183621,6.15915005837784,0.120859449591622,3.80962293576241,17.0349829531408,0,0,2.62248829918848,14.4383876130372,8.24064107017238,10.980896768476,13.1525302187935,9.60519822925169,13.6480060885076,8.33459155854927,10.3639639729027,12.3381802152231,6.23176806350862,11.5388647986616,13.7633187444321,13.2972161428596,12.536986264442,0.219259876645935,0.261435451024901,0,0,0,2.06082023295445,1.64825036673018,1.32015199872941,0.574265537996172,0,8.03419649220798,8.50702320970673,7.70243085573222,7.52168006158035,5.51346289938122,10.204923262486,5.94568445048337,6.47722368362367,5.51998621009772,0.165284915360978,0.192190067365106,0,0,0,0,0,0.616067160352178,0.532306030317022,0,0.74129687641568,0,0,0.316379424718726,0,0,0,0,0.78494864019923,4.31693898199955,3.29444435683266,1.88499843753098,0.202182481573316,0,0.421258456238981,0,2.43713489631284,3.16950440270266,2.18399858252777,1.55545975149084,0,3.30819206127675,0,0,0.578775534266688,0,0.202910376962704,1.54911749049875,0.281695602532241,3.72869515730534,4.02821068153797,0.35667105148125,0.354761064070598,9.28873595309722,8.56166721695745,0,0,0,0,0,2.2594512186427,6.45758059006845,10.1082885400575,7.98174276366016,7.3511488066227,0,0,0,0,0,0,0,0,1.28188885352968,3.84991942105343,0,0,0,0,3.50737800003409,0,0,0,0,0,0,0,0,1.52362600021443,0,0,0,0,0.307240764308458,0,0,0,0,0,0,0,0,0,10.2555725490326,5.09714191347956,0,0,0,0,0,0,0,0,0.824019371133798,0,6.97367958878744,2.48655523978033,12.0927718970052,0,0,5.59871257791253,0,0,0,5.22810049875748,0,3.33410970433911,0,0,0,0,0.962059999958153,6.52499617891314,0,0,21.0385036773463,7.58435421131222,12.8306029888632,3.99337488346572,0,0,0,0,0,0,0,6.83176346965156,9.38793153746324,0,1.38338342632836,1.43612231055635,2.82483166997221,0.638002319463839,3.02272058226146,0.533034776018635,0,0,0,0,0,0,0,0,4.64195741961659,2.61172493054636,0,5.40971599355228,8.95735737970654,5.48436899920703,10.9985426088053,0,0,0,0.202203398942031,7.2231988256891,0,0,0,0,37.0909338678427,3.62972148145992,0,0.947798694427319,3.30711522711884,5.08072137846511,0,0,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| ||
|short_description=p1@HOXD8 | |short_description=p1@HOXD8 | ||
}} | }} |
Latest revision as of 09:09, 18 September 2015
Short description: | p1@HOXD8 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_HOXD8_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000313173, ENST00000429017, NM_001199746, NM_001199747, NM_019558, uc002ukn.2, uc002uko.2, uc002ukp.2_5end |
EntrezGene: | HOXD8 |
HGNC: | 5139 |
UniProt: | P13378F8WBG7Q8IXZ1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney cell | 1.62e-11 | 17 |
kidney epithelial cell | 1.62e-11 | 17 |
epithelial cell of nephron | 5.50e-10 | 15 |
skin fibroblast | 3.60e-09 | 23 |
kidney tubule cell | 2.01e-08 | 10 |
nephron tubule epithelial cell | 2.01e-08 | 10 |
kidney cortical cell | 6.86e-08 | 12 |
renal cortical epithelial cell | 6.86e-08 | 12 |
meso-epithelial cell | 7.12e-08 | 45 |
Ontology term | p-value | n |
---|---|---|
cavitated compound organ | 6.37e-16 | 31 |
kidney | 4.95e-14 | 26 |
kidney mesenchyme | 4.95e-14 | 26 |
upper urinary tract | 4.95e-14 | 26 |
kidney rudiment | 4.95e-14 | 26 |
kidney field | 4.95e-14 | 26 |
integument | 2.13e-13 | 46 |
integumental system | 2.13e-13 | 46 |
skin of body | 6.17e-12 | 41 |
renal system | 6.77e-12 | 48 |
urinary system structure | 2.56e-11 | 47 |
excretory tube | 8.54e-11 | 16 |
kidney epithelium | 8.54e-11 | 16 |
nephron epithelium | 5.50e-10 | 15 |
renal tubule | 5.50e-10 | 15 |
nephron tubule | 5.50e-10 | 15 |
nephron | 5.50e-10 | 15 |
uriniferous tubule | 5.50e-10 | 15 |
nephrogenic mesenchyme | 5.50e-10 | 15 |
nephron tubule epithelium | 2.01e-08 | 10 |
cortex of kidney | 6.86e-08 | 12 |
renal parenchyma | 6.86e-08 | 12 |
reproductive organ | 1.36e-07 | 48 |
cortex | 3.46e-07 | 15 |
reproductive structure | 3.99e-07 | 59 |
reproductive system | 3.99e-07 | 59 |
adipose tissue | 4.19e-07 | 14 |
urogenital ridge | 6.18e-07 | 11 |
lymphatic vessel | 9.55e-07 | 8 |
lymph vasculature | 9.55e-07 | 8 |
lymphatic part of lymphoid system | 9.55e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
female reproductive organ cancer | 2.38e-07 | 27 |
reproductive organ cancer | 6.29e-07 | 29 |