FFCP PHASE1:Hg19::chr21:42540108..42540124,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=25825 | |EntrezGene=25825 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=934 | |HGNC=934 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=53bp_to_ENST00000544566_5end | |association_with_transcript=53bp_to_ENST00000544566_5end | ||
|cluster_id=chr21:42540108..42540124,+ | |||
|coexpression_cluster_id=C4078 | |coexpression_cluster_id=C4078 | ||
|description=CAGE_peak_3_at_BACE2_5end | |description=CAGE_peak_3_at_BACE2_5end | ||
|id=chr21:42540108..42540124,+ | |id=chr21:42540108..42540124,+ | ||
|ontology_enrichment_celltype=CL:0000066!4.19e-19!254;CL:0000222!3.47e-15!119;CL:0002139!1.07e-14!24;CL:0000220!1.85e-14!246;CL:0002321!4.37e-14!248;CL:0000213!4.32e-13!57;CL:0000215!4.32e-13!57;CL:0000115!1.19e-12!35;CL:0002078!4.98e-12!44;CL:0000071!1.21e-10!18;CL:0002546!1.21e-10!18;CL:0000076!5.90e-10!62 | |ontology_enrichment_celltype=CL:0000066!4.19e-19!254;CL:0000222!3.47e-15!119;CL:0002139!1.07e-14!24;CL:0000220!1.85e-14!246;CL:0002321!4.37e-14!248;CL:0000213!4.32e-13!57;CL:0000215!4.32e-13!57;CL:0000115!1.19e-12!35;CL:0002078!4.98e-12!44;CL:0000071!1.21e-10!18;CL:0002546!1.21e-10!18;CL:0000076!5.90e-10!62 | ||
|ontology_enrichment_celltype_v019=CL:0002139;6.02e-16;24!CL:0000115;1.71e-12;36!CL:0000071;1.64e-11;18!CL:0002078;3.90e-09;45!CL:0000213;1.47e-08;58!CL:0000215;1.47e-08;58!CL:1000413;5.35e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,2.40e-18,253;CL:0002139,7.82e-16,24;CL:0000115,1.21e-14,36;CL:0000222,2.67e-14,121;CL:0000213,9.82e-14,58;CL:0000215,9.82e-14,58;CL:0002078,2.72e-13,45;CL:0002321,6.00e-13,250;CL:0000071,1.98e-11,18;CL:0002546,1.98e-11,18;CL:0000076,1.80e-08,63;CL:1000413,5.94e-07,9 | |||
|ontology_enrichment_development_v019=CL:0002546;1.64e-11;18 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000055!3.36e-17!69;UBERON:0002049!1.82e-16!79;UBERON:0007798!1.82e-16!79;UBERON:0001981!1.33e-15!60;UBERON:0007500!1.33e-15!60;UBERON:0004537!1.33e-15!60;UBERON:0006965!1.33e-15!60;UBERON:0003914!2.06e-15!118;UBERON:0004872!1.36e-14!84;UBERON:0000477!1.59e-12!286;UBERON:0004535!8.07e-12!110;UBERON:0000483!1.89e-11!309;UBERON:0001009!1.90e-11!113;UBERON:0000119!2.42e-11!312;UBERON:0001637!6.63e-11!42;UBERON:0003509!6.63e-11!42;UBERON:0004572!6.63e-11!42;UBERON:0001986!1.21e-10!18;UBERON:0004638!1.21e-10!18;UBERON:0004852!1.21e-10!18;UBERON:0004111!2.53e-10!241;UBERON:0004573!9.73e-10!33;UBERON:0004571!9.73e-10!33;UBERON:0000487!1.10e-08!22;UBERON:0000468!1.83e-08!659;UBERON:0003104!4.55e-08!238;UBERON:0009142!4.55e-08!238;UBERON:0001048!6.03e-08!168;UBERON:0000025!7.05e-08!194;UBERON:0006914!7.47e-08!25;UBERON:0000481!1.20e-07!347;UBERON:0003103!1.71e-07!69;UBERON:0001737!2.00e-07!9;UBERON:0000490!2.38e-07!138;UBERON:0000467!3.24e-07!625;UBERON:0000480!5.18e-07!626 | |ontology_enrichment_uberon=UBERON:0000055!3.36e-17!69;UBERON:0002049!1.82e-16!79;UBERON:0007798!1.82e-16!79;UBERON:0001981!1.33e-15!60;UBERON:0007500!1.33e-15!60;UBERON:0004537!1.33e-15!60;UBERON:0006965!1.33e-15!60;UBERON:0003914!2.06e-15!118;UBERON:0004872!1.36e-14!84;UBERON:0000477!1.59e-12!286;UBERON:0004535!8.07e-12!110;UBERON:0000483!1.89e-11!309;UBERON:0001009!1.90e-11!113;UBERON:0000119!2.42e-11!312;UBERON:0001637!6.63e-11!42;UBERON:0003509!6.63e-11!42;UBERON:0004572!6.63e-11!42;UBERON:0001986!1.21e-10!18;UBERON:0004638!1.21e-10!18;UBERON:0004852!1.21e-10!18;UBERON:0004111!2.53e-10!241;UBERON:0004573!9.73e-10!33;UBERON:0004571!9.73e-10!33;UBERON:0000487!1.10e-08!22;UBERON:0000468!1.83e-08!659;UBERON:0003104!4.55e-08!238;UBERON:0009142!4.55e-08!238;UBERON:0001048!6.03e-08!168;UBERON:0000025!7.05e-08!194;UBERON:0006914!7.47e-08!25;UBERON:0000481!1.20e-07!347;UBERON:0003103!1.71e-07!69;UBERON:0001737!2.00e-07!9;UBERON:0000490!2.38e-07!138;UBERON:0000467!3.24e-07!625;UBERON:0000480!5.18e-07!626 | ||
|ontology_enrichment_uberon_v019=UBERON:0004638;1.64e-11;18!UBERON:0001986;1.64e-11;18!UBERON:0004852;1.64e-11;18!UBERON:0000055;1.37e-09;65!UBERON:0000487;2.00e-09;22!UBERON:0001637;3.16e-09;42!UBERON:0003509;3.16e-09;42!UBERON:0004572;3.16e-09;42!UBERON:0007500;4.64e-09;56!UBERON:0001981;4.64e-09;56!UBERON:0004537;4.64e-09;56!UBERON:0004573;4.84e-09;33!UBERON:0004571;4.84e-09;33!UBERON:0006914;4.44e-08;25!UBERON:0001737;5.62e-08;9!UBERON:0001557;5.62e-08;9!UBERON:0002049;1.33e-07;75!UBERON:0007798;1.33e-07;75!UBERON:0003914;1.54e-07;74!UBERON:0003915;5.35e-07;9!UBERON:0004700;5.35e-07;9!UBERON:0001917;5.35e-07;9!UBERON:0000490;7.22e-07;33 | |||
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| ||
|short_description=p3@BACE2 | |short_description=p3@BACE2 | ||
}} | }} |
Latest revision as of 12:21, 18 September 2015
Short description: | p3@BACE2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_BACE2_5end |
Coexpression cluster: | C4078_Mast_Endothelial_Lymphatic_Melanocyte_melanoma_Hep2_Hepatic |
Association with transcript: | 53bp_to_ENST00000544566_5end |
EntrezGene: | BACE2 |
HGNC: | 934 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 2.40e-18 | 253 |
endothelial cell of vascular tree | 7.82e-16 | 24 |
endothelial cell | 1.21e-14 | 36 |
mesodermal cell | 2.67e-14 | 121 |
lining cell | 9.82e-14 | 58 |
barrier cell | 9.82e-14 | 58 |
meso-epithelial cell | 2.72e-13 | 45 |
embryonic cell | 6.00e-13 | 250 |
blood vessel endothelial cell | 1.98e-11 | 18 |
embryonic blood vessel endothelial progenitor cell | 1.98e-11 | 18 |
squamous epithelial cell | 1.80e-08 | 63 |
endothelial cell of artery | 5.94e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
vessel | 1.09e-18 | 68 |
vasculature | 3.28e-17 | 78 |
vascular system | 3.28e-17 | 78 |
epithelial tube open at both ends | 5.79e-17 | 59 |
blood vessel | 5.79e-17 | 59 |
blood vasculature | 5.79e-17 | 59 |
vascular cord | 5.79e-17 | 59 |
splanchnic layer of lateral plate mesoderm | 8.03e-15 | 83 |
epithelial tube | 9.62e-15 | 117 |
cardiovascular system | 1.48e-11 | 109 |
blood vessel endothelium | 1.98e-11 | 18 |
endothelium | 1.98e-11 | 18 |
cardiovascular system endothelium | 1.98e-11 | 18 |
artery | 5.40e-11 | 42 |
arterial blood vessel | 5.40e-11 | 42 |
arterial system | 5.40e-11 | 42 |
circulatory system | 9.12e-11 | 112 |
systemic artery | 4.80e-10 | 33 |
systemic arterial system | 4.80e-10 | 33 |
simple squamous epithelium | 2.14e-09 | 22 |
epithelium | 2.05e-08 | 306 |
cell layer | 3.18e-08 | 309 |
squamous epithelium | 4.58e-08 | 25 |
larynx | 6.18e-08 | 9 |
anatomical conduit | 1.03e-07 | 240 |
primordium | 1.12e-07 | 160 |
endothelial tube | 5.94e-07 | 9 |
arterial system endothelium | 5.94e-07 | 9 |
endothelium of artery | 5.94e-07 | 9 |