FFCP PHASE1:Hg19::chr4:77507174..77507199,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr4:77507174..77507199,+
|short_description=p9@SHROOM3
|description=CAGE_peak_9_at_SHROOM3_5end
|association_with_transcript=-93bp_to_ENST00000490690,uc011cby....") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=57619 | |EntrezGene=57619 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30422 | |HGNC=30422 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-93bp_to_ENST00000490690,uc011cby.1_5end | |||
|cluster_id=chr4:77507174..77507199,+ | |||
|description=CAGE_peak_9_at_SHROOM3_5end | |||
|id=chr4:77507174..77507199,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002681;1.58e-10;12!CL:0002584;1.58e-10;12!CL:1000449;2.26e-08;15!CL:1000507;3.00e-08;10!CL:1000494;3.00e-08;10!CL:0002605;5.49e-08;3!CL:0000239;1.15e-07;3!CL:1000615;1.15e-07;3!CL:0002306;1.15e-07;3!CL:1000497;2.35e-07;17!CL:0002518;2.35e-07;17 | |||
|ontology_enrichment_celltype_v019_2=CL:0002681,2.29e-10,12;CL:0002584,2.29e-10,12;CL:1000449,3.03e-08,15;CL:1000507,4.26e-08,10;CL:1000494,4.26e-08,10;CL:0002605,5.41e-08,3;CL:0000239,1.73e-07,3;CL:1000615,1.73e-07,3;CL:0002306,1.73e-07,3;CL:1000497,3.03e-07,17;CL:0002518,3.03e-07,17 | |||
|ontology_enrichment_development_v019=UBERON:0004140;9.91e-07;1 | |||
|ontology_enrichment_disease=DOID:299!3.26e-08!25;DOID:305!4.72e-07!106 | |||
|ontology_enrichment_disease_v019=DOID:4929;1.46e-11;2 | |||
|ontology_enrichment_disease_v019_2=DOID:4929,8.83e-12,2 | |||
|ontology_enrichment_uberon=UBERON:0002780!2.14e-13!41;UBERON:0001890!2.14e-13!41;UBERON:0006240!2.14e-13!41;UBERON:0003080!7.00e-13!42;UBERON:0000062!1.96e-12!511;UBERON:0001869!4.46e-12!32;UBERON:0001017!1.74e-11!82;UBERON:0000481!1.88e-11!347;UBERON:0000955!2.67e-11!69;UBERON:0006238!2.67e-11!69;UBERON:0002616!3.19e-11!59;UBERON:0001049!4.10e-11!57;UBERON:0005068!4.10e-11!57;UBERON:0006241!4.10e-11!57;UBERON:0007135!4.10e-11!57;UBERON:0005743!4.59e-11!86;UBERON:0001893!5.50e-11!34;UBERON:0000956!5.93e-11!25;UBERON:0000203!5.93e-11!25;UBERON:0002020!6.29e-11!34;UBERON:0003528!6.29e-11!34;UBERON:0000064!1.54e-10!219;UBERON:0002791!1.87e-10!33;UBERON:0000025!3.00e-10!194;UBERON:0003075!7.81e-10!86;UBERON:0007284!7.81e-10!86;UBERON:0007023!8.72e-10!115;UBERON:0000073!1.28e-09!94;UBERON:0001016!1.28e-09!94;UBERON:0002346!1.65e-09!90;UBERON:0003056!3.74e-09!61;UBERON:0000467!5.40e-09!625;UBERON:0000480!6.52e-09!626;UBERON:0000468!1.01e-08!659;UBERON:0002619!2.56e-08!22;UBERON:0001950!5.63e-08!20;UBERON:0000483!1.22e-07!309;UBERON:0000119!2.31e-07!312;UBERON:0000475!5.77e-07!365 | |||
|ontology_enrichment_uberon_v019=UBERON:0000353;9.21e-12;15!UBERON:0001225;1.58e-10;12!UBERON:0008987;1.58e-10;12!UBERON:0002108;7.26e-10;4!UBERON:0001851;2.26e-08;15!UBERON:0006555;2.26e-08;15!UBERON:0004819;2.26e-08;15!UBERON:0001285;2.26e-08;15!UBERON:0007684;2.26e-08;15!UBERON:0004211;3.00e-08;10!UBERON:0009773;3.00e-08;10!UBERON:0001231;3.00e-08;10!UBERON:0004810;3.00e-08;10!UBERON:0006853;1.15e-07;3!UBERON:0007685;1.15e-07;3!UBERON:0004134;1.15e-07;3!UBERON:0005409;1.93e-07;22!UBERON:0002294;5.05e-07;7!UBERON:0001173;5.05e-07;7!UBERON:0000160;6.70e-07;17!UBERON:0002423;7.07e-07;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000353,1.30e-11,15;UBERON:0001225,2.29e-10,12;UBERON:0008987,2.29e-10,12;UBERON:0002108,5.44e-10,4;UBERON:0002294,3.90e-09,9;UBERON:0001173,3.90e-09,9;UBERON:0004912,3.90e-09,9;UBERON:0000058,4.03e-09,19;UBERON:0001851,3.03e-08,15;UBERON:0004211,3.03e-08,15;UBERON:0009773,3.03e-08,15;UBERON:0001231,3.03e-08,15;UBERON:0001285,3.03e-08,15;UBERON:0007684,3.03e-08,15;UBERON:0004208,3.03e-08,15;UBERON:0002394,3.89e-08,6;UBERON:0003928,3.89e-08,6;UBERON:0004810,4.26e-08,10;UBERON:0006555,1.03e-07,16;UBERON:0004819,1.03e-07,16;UBERON:0006853,1.73e-07,3;UBERON:0007685,1.73e-07,3;UBERON:0004134,1.73e-07,3;UBERON:0000160,5.92e-07,17;UBERON:0007499,6.34e-07,25;UBERON:0009497,6.85e-07,25;UBERON:0000015,6.85e-07,25;UBERON:0002423,6.85e-07,25;UBERON:0006235,6.85e-07,25;UBERON:0004161,6.85e-07,25 | |||
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| ||
|short_description=p9@SHROOM3 | |||
}} | }} |
Latest revision as of 18:02, 18 September 2015
Short description: | p9@SHROOM3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_SHROOM3_5end |
Coexpression cluster: | NA |
Association with transcript: | -93bp_to_ENST00000490690, uc011cby.1_5end |
EntrezGene: | SHROOM3 |
HGNC: | 30422 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney cortical cell | 2.29e-10 | 12 |
renal cortical epithelial cell | 2.29e-10 | 12 |
epithelial cell of nephron | 3.03e-08 | 15 |
kidney tubule cell | 4.26e-08 | 10 |
nephron tubule epithelial cell | 4.26e-08 | 10 |
astrocyte of the cerebral cortex | 5.41e-08 | 3 |
brush border epithelial cell | 1.73e-07 | 3 |
kidney cortex tubule cell | 1.73e-07 | 3 |
epithelial cell of proximal tubule | 1.73e-07 | 3 |
kidney cell | 3.03e-07 | 17 |
kidney epithelial cell | 3.03e-07 | 17 |
Ontology term | p-value | n |
---|---|---|
parenchyma | 1.30e-11 | 15 |
cortex of kidney | 2.29e-10 | 12 |
renal parenchyma | 2.29e-10 | 12 |
small intestine | 5.44e-10 | 4 |
biliary system | 3.90e-09 | 9 |
biliary tree | 3.90e-09 | 9 |
biliary bud | 3.90e-09 | 9 |
duct | 4.03e-09 | 19 |
cortex | 3.03e-08 | 15 |
nephron epithelium | 3.03e-08 | 15 |
renal tubule | 3.03e-08 | 15 |
nephron tubule | 3.03e-08 | 15 |
nephron | 3.03e-08 | 15 |
uriniferous tubule | 3.03e-08 | 15 |
nephrogenic mesenchyme | 3.03e-08 | 15 |
bile duct | 3.89e-08 | 6 |
digestive system duct | 3.89e-08 | 6 |
nephron tubule epithelium | 4.26e-08 | 10 |
excretory tube | 1.03e-07 | 16 |
kidney epithelium | 1.03e-07 | 16 |
renal cortex tubule | 1.73e-07 | 3 |
region of nephron tubule | 1.73e-07 | 3 |
proximal tubule | 1.73e-07 | 3 |
intestine | 5.92e-07 | 17 |
epithelial sac | 6.34e-07 | 25 |
epithelium of foregut-midgut junction | 6.85e-07 | 25 |
anatomical boundary | 6.85e-07 | 25 |
hepatobiliary system | 6.85e-07 | 25 |
foregut-midgut junction | 6.85e-07 | 25 |
septum transversum | 6.85e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
tubular adenocarcinoma | 8.83e-12 | 2 |