FFCP PHASE1:Hg19::chr5:82808155..82808193,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1462 | |EntrezGene=1462 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2464 | |HGNC=2464 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=234bp_to_ENST00000515397_5end | |association_with_transcript=234bp_to_ENST00000515397_5end | ||
|cluster_id=chr5:82808155..82808193,+ | |||
|coexpression_cluster_id=C456 | |coexpression_cluster_id=C456 | ||
|description=CAGE_peak_9_at_VCAN_5end | |description=CAGE_peak_9_at_VCAN_5end | ||
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|ontology_enrichment_celltype=CL:0002057!1.66e-19!42;CL:0000860!5.55e-17!45;CL:0000055!4.43e-13!180;CL:0000048!1.82e-11!430;CL:0000034!4.74e-11!444;CL:0000057!7.55e-11!75;CL:0000723!1.00e-10!436;CL:0002194!2.27e-08!63;CL:0000576!2.27e-08!63;CL:0000040!2.27e-08!63;CL:0000559!2.27e-08!63;CL:0002334!3.98e-08!12;CL:0000393!8.83e-08!60;CL:0000211!8.83e-08!60;CL:0000680!1.04e-07!57;CL:0000056!1.04e-07!57;CL:0000355!1.04e-07!57;CL:0002009!1.10e-07!65;CL:0000187!3.25e-07!54 | |ontology_enrichment_celltype=CL:0002057!1.66e-19!42;CL:0000860!5.55e-17!45;CL:0000055!4.43e-13!180;CL:0000048!1.82e-11!430;CL:0000034!4.74e-11!444;CL:0000057!7.55e-11!75;CL:0000723!1.00e-10!436;CL:0002194!2.27e-08!63;CL:0000576!2.27e-08!63;CL:0000040!2.27e-08!63;CL:0000559!2.27e-08!63;CL:0002334!3.98e-08!12;CL:0000393!8.83e-08!60;CL:0000211!8.83e-08!60;CL:0000680!1.04e-07!57;CL:0000056!1.04e-07!57;CL:0000355!1.04e-07!57;CL:0002009!1.10e-07!65;CL:0000187!3.25e-07!54 | ||
|ontology_enrichment_celltype_v019=CL:0000860;2.42e-25;33!CL:0002057;2.42e-25;33!CL:0000473;1.53e-17;39!CL:0000234;1.53e-17;39!CL:0000576;4.28e-15;48!CL:0002334;1.51e-10;12!CL:0000766;5.00e-09;69 | |ontology_enrichment_celltype_v019=CL:0000860;2.42e-25;33!CL:0002057;2.42e-25;33!CL:0000473;1.53e-17;39!CL:0000234;1.53e-17;39!CL:0000576;4.28e-15;48!CL:0002334;1.51e-10;12!CL:0000766;5.00e-09;69 | ||
|ontology_enrichment_celltype_v019_2=CL:0000860,5.36e-28,42;CL:0002057,5.36e-28,42;CL:0000473,5.55e-23,48;CL:0000234,5.55e-23,48;CL:0000048,4.06e-19,427;CL:0000034,1.65e-18,441;CL:0000723,2.42e-18,433;CL:0002194,4.40e-16,59;CL:0000576,4.40e-16,59;CL:0000040,4.40e-16,59;CL:0000559,4.40e-16,59;CL:0000134,7.31e-16,354;CL:0002320,1.79e-15,361;CL:0002009,3.30e-15,61;CL:0000219,8.19e-14,386;CL:0000766,1.03e-13,72;CL:0000839,2.87e-13,66;CL:0000557,6.43e-13,67;CL:0002334,8.39e-11,12;CL:0000057,6.33e-10,76 | |||
|ontology_enrichment_development_v019=CL:0002057;2.10e-21;42 | |ontology_enrichment_development_v019=CL:0002057;2.10e-21;42 | ||
|ontology_enrichment_disease=DOID:2394!2.05e-09!14 | |ontology_enrichment_disease=DOID:2394!2.05e-09!14 | ||
|ontology_enrichment_disease_v019=DOID:2394;3.95e-13;14 | |ontology_enrichment_disease_v019=DOID:2394;3.95e-13;14 | ||
|ontology_enrichment_disease_v019_2=DOID:2394,2.26e-13,14 | |||
|ontology_enrichment_uberon=UBERON:0002204!1.24e-11!167;UBERON:0000468!1.88e-10!659;UBERON:0003081!1.32e-09!216;UBERON:0000948!7.60e-08!24;UBERON:0005498!7.60e-08!24;UBERON:0004140!7.60e-08!24;UBERON:0009881!7.60e-08!24;UBERON:0004141!7.60e-08!24;UBERON:0003084!7.60e-08!24;UBERON:0007005!7.60e-08!24;UBERON:0004139!7.60e-08!24;UBERON:0004291!7.60e-08!24;UBERON:0002385!9.60e-08!63;UBERON:0001015!9.60e-08!63;UBERON:0000383!9.60e-08!63;UBERON:0000926!1.26e-07!448;UBERON:0004120!1.26e-07!448;UBERON:0006603!1.26e-07!448;UBERON:0000467!1.32e-07!625;UBERON:0001134!1.49e-07!61;UBERON:0002036!1.49e-07!61;UBERON:0003082!1.49e-07!61;UBERON:0000480!1.77e-07!626;UBERON:0004290!4.32e-07!70;UBERON:0000914!8.03e-07!83;UBERON:0002329!8.03e-07!83;UBERON:0003077!8.03e-07!83;UBERON:0003059!8.03e-07!83;UBERON:0007282!8.03e-07!83;UBERON:0009618!8.03e-07!83;UBERON:0007285!8.03e-07!83 | |ontology_enrichment_uberon=UBERON:0002204!1.24e-11!167;UBERON:0000468!1.88e-10!659;UBERON:0003081!1.32e-09!216;UBERON:0000948!7.60e-08!24;UBERON:0005498!7.60e-08!24;UBERON:0004140!7.60e-08!24;UBERON:0009881!7.60e-08!24;UBERON:0004141!7.60e-08!24;UBERON:0003084!7.60e-08!24;UBERON:0007005!7.60e-08!24;UBERON:0004139!7.60e-08!24;UBERON:0004291!7.60e-08!24;UBERON:0002385!9.60e-08!63;UBERON:0001015!9.60e-08!63;UBERON:0000383!9.60e-08!63;UBERON:0000926!1.26e-07!448;UBERON:0004120!1.26e-07!448;UBERON:0006603!1.26e-07!448;UBERON:0000467!1.32e-07!625;UBERON:0001134!1.49e-07!61;UBERON:0002036!1.49e-07!61;UBERON:0003082!1.49e-07!61;UBERON:0000480!1.77e-07!626;UBERON:0004290!4.32e-07!70;UBERON:0000914!8.03e-07!83;UBERON:0002329!8.03e-07!83;UBERON:0003077!8.03e-07!83;UBERON:0003059!8.03e-07!83;UBERON:0007282!8.03e-07!83;UBERON:0009618!8.03e-07!83;UBERON:0007285!8.03e-07!83 | ||
|ontology_enrichment_uberon_v019= | |ontology_enrichment_uberon_v019= | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,2.01e-15,371;UBERON:0000926,1.27e-12,315;UBERON:0004120,1.27e-12,315;UBERON:0006603,1.27e-12,315;UBERON:0003081,1.34e-11,203;UBERON:0002204,6.18e-11,167;UBERON:0002371,3.24e-10,76;UBERON:0001474,1.66e-09,82;UBERON:0001434,6.37e-09,100;UBERON:0004765,2.08e-08,90;UBERON:0002390,3.63e-08,98;UBERON:0003061,3.63e-08,98;UBERON:0000947,8.83e-07,21;UBERON:0010191,8.83e-07,21 | |||
|phase1_expression=1.99846217197612,2.35510576280081,1.40954404095971,6.00439790118782,0.446961094427288,2.61701557230111,0,0,0,0,0.697801167972428,0,0,0.247532705920093,0,3.36162573225888,3.61616716814386,3.65155045193687,1.46379839637152,0,0.204000691244253,0,0.572471974262113,1.36874425072884,0.753255837568817,0,0,0,1.18009283054671,1.15148819429164,1.08371286321253,0,0,0,0,0,0,2.76997704265939,2.80762226458198,3.25516306073778,0,0,0,4.36194716338694,2.26725566213286,0.485168122375632,3.48643555358527,2.46700732813095,1.23882548358041,6.04154023876516,3.84241059793651,2.12834006899727,6.20542225325913,4.51839278508678,1.35426486594342,8.84738995850242,2.45615535052061,1.34834090667051,6.73384563215986,2.24650318953266,2.55734850319616,5.60747210317417,1.19678194572979,1.27867425159808,8.9964863974861,0,0.622822248995575,7.5374599577023,6.25779502104242,2.82345498116652,3.63239701580021,0.736555271975129,1.26584954976354,1.05627643155971,1.06302149982522,0.628975936525128,3.59451619668784,3.15371474967163,4.8217676009124,0,0,0,0,0,0,0,0,0,0,0,0.569212969109448,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.14828656316206,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.31420598941885,0,0.255725123687061,1.80719576192283,0,1.44846518960824,1.5905718941022,0.486634870302636,0.850813354476611,2.88248216701333,1.49319135678314,0,0,0,0,0,0,0.238490624305342,0,0,0,0,0,0,0,0,0,0.258416759169329,0.35576626268671,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.96971951695318,3.54565432660823,2.51577443545116,11.7603014507014,2.83734705758686,0.560677600142307,1.06748995729705,1.2333377420858,1.24484414159907,0.808264032418128,1.63461903113459,0,0.576175924479999,0,0,0,0.298897361103602,0.352303495931295,0.323745888736263,0.280901613404497,0,0.61417158655884,0.103325781175765,0,1.7308685049499,0,0.718618141816238,0,0.500474079487857,0,1.31693286264251,0.612975591598039,1.20190447125277,0.453728732640084,2.51145489964407,1.06778694409284,0.635795703478686,2.70081986475962,0.721367704669072,2.06112432036503,0.18611685633159,1.85653965465393,1.55899208257918,2.77677151668526,0,0.323292113637624,3.19508633264953,0.604512589365842,0.169560592310488,0,0,0,0.121973706129595,0.397589304964456,0.116193942869518,1.65857688024593,1.26160425437814,1.09493207722749,0,3.21620469096443,0,0.464367928031979,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0925884451585296,0,0,0,0,1.99594780200897,0,0,0,0,0,0,0,0,0,0,0,0.268675568108545,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.224262168690721,0,0.22001485746285,0.904902010304444,0,0,0.26593811658487,0,0.257207374262142,0,0,0,0,0,0,0.355391948742546,1.58390374586686,0,0,0.299918973546171,0,0,0,1.19812427745791,1.14861935834114,0,0.579125226670317,0.205476322550383,0.895304816199478,0,0,0,0.128343036279748,0.76228387266739,1.30139853857622,0,0.502548796003046,0,0,0,0,1.2269149171914,0.500170521059677,0,1.87173775377726,4.10386674233472,0.946214490203608,0.702848489956279,0,0,0,0,0.553107505625109,0.347534457872331,0,0,0.413536052245775,1.94142780736755,1.06727557803444,0,0,0,1.73675465473144,2.455391572609,3.36792113319688,1.66580894032411,1.02341449813341,6.4341568457443,1.48418066444991,1.3878872442239,3.37367278094941,0.98552587216571,6.75030757938707,1.74315567689939,0.241718899183244,1.20303882181971,0.184161977871793,0.34444334449382,0.182091168006717,0,0.451199612907412,0.693138033939733,0,1.46139224653261,0.949964660035881,0,0,0.215915916102139,0,0,0.501689773854853,0,0,0.447749509444357,0,0,0,0.328014645699706,0,0.206082023295445,0,0,0,0,3.21367859688319,0.580024309752732,0.462145851343933,0.614014698904518,0.275673144969061,0.429680979473094,0.580066775656914,0.681813019328807,1.15741646340759,0.661139661443912,0.384380134730212,0.127612712494584,0,0,8.18512101759664,1.3940745403212,1.23213432070436,0.532306030317022,0,0.74129687641568,0.572499546967965,0,0.632758849437452,0,0,1.71175595213568,0.318203247925937,0.78494864019923,0.539617372749944,1.64722217841633,0.824686816419805,0.606547444719948,0,0.842516912477962,0,2.68084838594413,1.05650146756755,0.545999645631943,1.1312434556297,2.26016233240486,0,1.32687795048244,0.438450885253763,0,0.655894752046633,0.608731130888112,0.30982349809975,1.12678241012897,0.430234056612155,0,1.07001315444375,0,1.05553817648832,3.29294892959902,0,0,0.0962221127255121,0.670302275535787,0,0.188287601553558,0,0,0,0,0.507447609232169,0,0,0.476463550915578,0,0.648473311192717,0.540031437238115,1.58625035258854,0.213648142254946,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439524537815682,0,0,0,0,0,0,0,0.281338832821026,0.556543525114529,0.659215496907038,0,3.18796781201712,0,0,0,0,1.86623752597084,0,0,0,0.295930216910801,2.3948309234694,0,0,0.371072392647405,0,0,0,0,0,0,0,0,0,1.38899995946634,0,0.482385754501632,0,0.442317039724898,0,0,0,0,0.153900517007594,0.455768223388005,0,0,0,0,0.732780747214898,1.06606955203727,0,0,0,0,0,0,0,0,0,0.652931232636591,0,0,0,0.0884575645033392,0,0,0,0,0.134802265961354,0.802577647298789,0.937057782901357,0,0,0,0,0,0.30607276163049,0.82142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| ||
|short_description=p9@VCAN | |short_description=p9@VCAN | ||
}} | }} |
Latest revision as of 00:50, 19 September 2015
Short description: | p9@VCAN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_VCAN_5end |
Coexpression cluster: | C456_Fibroblast_Smooth_CD14_Preadipocyte_Lens_mesenchymal_serous |
Association with transcript: | 234bp_to_ENST00000515397_5end |
EntrezGene: | VCAN |
HGNC: | 2464 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 5.36e-28 | 42 |
CD14-positive, CD16-negative classical monocyte | 5.36e-28 | 42 |
defensive cell | 5.55e-23 | 48 |
phagocyte | 5.55e-23 | 48 |
multi fate stem cell | 4.06e-19 | 427 |
stem cell | 1.65e-18 | 441 |
somatic stem cell | 2.42e-18 | 433 |
monopoietic cell | 4.40e-16 | 59 |
monocyte | 4.40e-16 | 59 |
monoblast | 4.40e-16 | 59 |
promonocyte | 4.40e-16 | 59 |
mesenchymal cell | 7.31e-16 | 354 |
connective tissue cell | 1.79e-15 | 361 |
macrophage dendritic cell progenitor | 3.30e-15 | 61 |
motile cell | 8.19e-14 | 386 |
myeloid leukocyte | 1.03e-13 | 72 |
myeloid lineage restricted progenitor cell | 2.87e-13 | 66 |
granulocyte monocyte progenitor cell | 6.43e-13 | 67 |
preadipocyte | 8.39e-11 | 12 |
fibroblast | 6.33e-10 | 76 |
Ontology term | p-value | n |
---|---|---|
connective tissue | 2.01e-15 | 371 |
mesoderm | 1.27e-12 | 315 |
mesoderm-derived structure | 1.27e-12 | 315 |
presumptive mesoderm | 1.27e-12 | 315 |
lateral plate mesoderm | 1.34e-11 | 203 |
musculoskeletal system | 6.18e-11 | 167 |
bone marrow | 3.24e-10 | 76 |
bone element | 1.66e-09 | 82 |
skeletal system | 6.37e-09 | 100 |
skeletal element | 2.08e-08 | 90 |
hematopoietic system | 3.63e-08 | 98 |
blood island | 3.63e-08 | 98 |
aorta | 8.83e-07 | 21 |
aortic system | 8.83e-07 | 21 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 2.26e-13 | 14 |