FFCP PHASE1:Hg19::chr15:75249100..75249121,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr15:75249100..75249121,-
|short_description=p1@RPP25
|description=CAGE_peak_1_at_RPP25_5end
|association_with_transcript=-146bp_to_ENST00000499788_5end
|Entr...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=54913 | |EntrezGene=54913 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30361 | |HGNC=30361 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-146bp_to_ENST00000499788_5end | |||
|cluster_id=chr15:75249100..75249121,- | |||
|description=CAGE_peak_1_at_RPP25_5end | |||
|id=chr15:75249100..75249121,- | |||
|ontology_enrichment_celltype=CL:0000115!3.03e-14!35;CL:0000066!2.19e-12!254;CL:0002078!1.11e-11!44;CL:0002139!2.15e-10!24;CL:0000213!4.86e-10!57;CL:0000215!4.86e-10!57;CL:0000071!2.11e-08!18;CL:0002546!2.11e-08!18;CL:0000222!8.66e-08!119;CL:0000148!2.72e-07!10;CL:0000541!2.72e-07!10 | |||
|ontology_enrichment_celltype_v019=CL:0000115;1.79e-12;36!CL:0002139;1.71e-10;24!CL:0000071;1.87e-08;18!CL:0002078;3.08e-08;45!CL:0000148;2.39e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000115,1.07e-14,36;CL:0000066,2.61e-12,253;CL:0002078,4.02e-12,45;CL:0000213,1.65e-10,58;CL:0000215,1.65e-10,58;CL:0002139,1.94e-10,24;CL:0000071,1.95e-08,18;CL:0002546,1.95e-08,18;CL:0000222,5.26e-08,121;CL:0000148,2.55e-07,10;CL:0000541,2.55e-07,10 | |||
|ontology_enrichment_development_v019=CL:0002546;1.87e-08;18!UBERON:0008947;2.45e-07;29 | |||
|ontology_enrichment_disease=DOID:0050687!2.53e-08!143;DOID:305!2.28e-07!106 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:0050687,1.37e-08,143;DOID:305,1.77e-07,106 | |||
|ontology_enrichment_uberon=UBERON:0000468!1.99e-09!659;UBERON:0000477!3.14e-09!286;UBERON:0000922!8.33e-09!612;UBERON:0000025!1.42e-08!194;UBERON:0000487!1.96e-08!22;UBERON:0001986!2.11e-08!18;UBERON:0004638!2.11e-08!18;UBERON:0004852!2.11e-08!18;UBERON:0000119!2.48e-08!312;UBERON:0000483!3.34e-08!309;UBERON:0008947!5.57e-08!38;UBERON:0003258!5.57e-08!38;UBERON:0004111!6.92e-08!241;UBERON:0003914!9.62e-08!118;UBERON:0000923!1.04e-07!604;UBERON:0005291!1.04e-07!604;UBERON:0006598!1.04e-07!604;UBERON:0002532!1.04e-07!604;UBERON:0006914!1.08e-07!25;UBERON:0002050!1.28e-07!605;UBERON:0005423!1.28e-07!605;UBERON:0000064!2.42e-07!219;UBERON:0000063!3.16e-07!97;UBERON:0004872!3.28e-07!84;UBERON:0001737!4.47e-07!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0000487;1.49e-08;22!UBERON:0004638;1.87e-08;18!UBERON:0001986;1.87e-08;18!UBERON:0004852;1.87e-08;18!UBERON:0000072;9.00e-08;37!UBERON:0006914;1.06e-07;25!UBERON:0000490;2.46e-07;33!UBERON:0001737;3.95e-07;9!UBERON:0001557;3.95e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000487,1.81e-08,22;UBERON:0004638,1.95e-08,18;UBERON:0001986,1.95e-08,18;UBERON:0004852,1.95e-08,18;UBERON:0000025,2.33e-08,192;UBERON:0008947,5.95e-08,38;UBERON:0003258,5.95e-08,38;UBERON:0003914,7.29e-08,117;UBERON:0006914,1.01e-07,25;UBERON:0000119,1.09e-07,309;UBERON:0000483,1.45e-07,306;UBERON:0004872,2.04e-07,83;UBERON:0004111,2.78e-07,240;UBERON:0000922,3.82e-07,592;UBERON:0001737,4.19e-07,9;UBERON:0001048,4.78e-07,160;UBERON:0000923,4.82e-07,560;UBERON:0010316,4.82e-07,560;UBERON:0005291,4.82e-07,560;UBERON:0006598,4.82e-07,560;UBERON:0010317,4.82e-07,560;UBERON:0002532,4.82e-07,560;UBERON:0004921,8.08e-07,118 | |||
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| ||
|short_description=p1@RPP25 | |||
}} | }} |
Latest revision as of 02:23, 19 September 2015
Short description: | p1@RPP25 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RPP25_5end |
Coexpression cluster: | NA |
Association with transcript: | -146bp_to_ENST00000499788_5end |
EntrezGene: | RPP25 |
HGNC: | 30361 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell | 1.07e-14 | 36 |
epithelial cell | 2.61e-12 | 253 |
meso-epithelial cell | 4.02e-12 | 45 |
lining cell | 1.65e-10 | 58 |
barrier cell | 1.65e-10 | 58 |
endothelial cell of vascular tree | 1.94e-10 | 24 |
blood vessel endothelial cell | 1.95e-08 | 18 |
embryonic blood vessel endothelial progenitor cell | 1.95e-08 | 18 |
mesodermal cell | 5.26e-08 | 121 |
melanocyte | 2.55e-07 | 10 |
melanoblast | 2.55e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
simple squamous epithelium | 1.81e-08 | 22 |
blood vessel endothelium | 1.95e-08 | 18 |
endothelium | 1.95e-08 | 18 |
cardiovascular system endothelium | 1.95e-08 | 18 |
tube | 2.33e-08 | 192 |
respiratory primordium | 5.95e-08 | 38 |
endoderm of foregut | 5.95e-08 | 38 |
epithelial tube | 7.29e-08 | 117 |
squamous epithelium | 1.01e-07 | 25 |
cell layer | 1.09e-07 | 309 |
epithelium | 1.45e-07 | 306 |
splanchnic layer of lateral plate mesoderm | 2.04e-07 | 83 |
anatomical conduit | 2.78e-07 | 240 |
embryo | 3.82e-07 | 592 |
larynx | 4.19e-07 | 9 |
primordium | 4.78e-07 | 160 |
germ layer | 4.82e-07 | 560 |
germ layer / neural crest | 4.82e-07 | 560 |
embryonic tissue | 4.82e-07 | 560 |
presumptive structure | 4.82e-07 | 560 |
germ layer / neural crest derived structure | 4.82e-07 | 560 |
epiblast (generic) | 4.82e-07 | 560 |
subdivision of digestive tract | 8.08e-07 | 118 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 1.37e-08 | 143 |
carcinoma | 1.77e-07 | 106 |