FFCP PHASE1:Hg19::chr1:183212409..183212419,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3918 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6493 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-149bp_to_ENST00000476255_5end | |||
|cluster_id=chr1:183212409..183212419,+ | |||
|coexpression_cluster_id=C268 | |||
|description=CAGE_peak_12_at_LAMC2_5end | |||
|id=chr1:183212409..183212419,+ | |||
|ontology_enrichment_celltype=CL:0000066!1.57e-24!254;CL:0002076!3.34e-19!43;CL:0002159!2.49e-18!13;CL:0002368!4.66e-14!13;CL:0000223!5.96e-13!59;CL:0002621!1.29e-12!3;CL:0000240!1.26e-10!6;CL:0000311!1.26e-10!6;CL:0000079!1.26e-10!6;CL:0000237!1.26e-10!6;CL:0000036!1.26e-10!6;CL:0000357!1.26e-10!6;CL:0000114!1.26e-10!6;CL:0002077!5.57e-10!33;CL:0000244!6.80e-10!4;CL:0000731!6.80e-10!4;CL:0002327!4.01e-09!4;CL:0000575!1.27e-08!2;CL:0000063!1.50e-08!578;CL:0002536!2.00e-08!2;CL:0000362!4.07e-08!8;CL:0002251!7.48e-08!21;CL:0000312!8.13e-08!5;CL:0000220!9.11e-07!246 | |||
|ontology_enrichment_celltype_v019=CL:0002159;4.61e-25;14!CL:0000244;2.17e-23;4!CL:0000731;2.17e-23;4!CL:0000312;2.52e-18;5!CL:0000240;2.24e-15;6!CL:0000311;2.24e-15;6!CL:0000079;2.24e-15;6!CL:0000237;2.24e-15;6!CL:0002166;2.11e-14;3!CL:0002621;4.13e-14;3!CL:0002368;9.16e-13;13!CL:0002077;5.98e-12;34!CL:0000362;1.92e-10;9!CL:0002076;1.17e-09;42 | |||
|ontology_enrichment_celltype_v019_2=CL:0002159,3.90e-25,14;CL:0000244,2.17e-23,4;CL:0000731,2.17e-23,4;CL:0000312,2.11e-18,5;CL:0000240,1.93e-15,6;CL:0000311,1.93e-15,6;CL:0000079,1.93e-15,6;CL:0000237,1.93e-15,6;CL:0000036,1.93e-15,6;CL:0000357,1.93e-15,6;CL:0000114,1.93e-15,6;CL:0002166,1.51e-14,3;CL:0002621,3.39e-14,3;CL:0002077,1.28e-13,34;CL:0002368,1.10e-12,13;CL:0000066,1.23e-11,253;CL:0002076,4.39e-11,42;CL:0000362,1.74e-10,9;CL:0000223,7.89e-08,58 | |||
|ontology_enrichment_development_v019=CL:0000357;2.24e-15;6!CL:0000114;2.24e-15;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001949!1.29e-12!3;UBERON:0005910!9.82e-11!6;UBERON:0001911!4.01e-09!4;UBERON:0005333!4.01e-09!4;UBERON:0008425!4.01e-09!4;UBERON:0005311!4.01e-09!4;UBERON:0000365!5.50e-08!5;UBERON:0006554!7.02e-07!44 | |||
|ontology_enrichment_uberon_v019=UBERON:0000486;9.01e-21;12!UBERON:0000365;7.59e-19;5!UBERON:0005910;8.26e-16;6!UBERON:0001949;4.13e-14;3!UBERON:0001708;4.92e-11;4!UBERON:0008895;4.92e-11;4!UBERON:0011159;5.27e-09;5!UBERON:0005911;7.03e-08;36!UBERON:0010371;7.56e-08;31 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000365,7.61e-19,5;UBERON:0005910,8.27e-16,6;UBERON:0001949,3.39e-14,3;UBERON:0001708,3.83e-11,4;UBERON:0008895,3.83e-11,4;UBERON:0011159,4.32e-09,5;UBERON:0010188,1.02e-07,6;UBERON:0002539,1.02e-07,6;UBERON:0008816,1.02e-07,6;UBERON:0003102,5.78e-07,99 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0.697801167972428,0.218441372130172,0.791300934685361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30120591877825,2.58827807116751,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.09288586487763,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.872188104285069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.35282597214308,1.36373060295417,0.860413786167011,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31700342490351,1.1240175325762,1.91005047582099,0.185176890317059,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.51973192298289,1.70130116690864,0.268675568108545,0.581267877027924,1.15014803749563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160853921143607,0,0,0,0,0,0,0,2.80709058424599,0.736647911487171,0,0,0,0,0.385076685522074,0,0,0.316654886678627,0,0,0,0,0,0,0.509752546090077,0,0.223874754722178,0,0,0,0,0,0,0,0,0,0.650060246036521,0,0,0,0,0,0,0,0,0,2.64455864577565,2.11409074101617,0.638063562472921,1.0115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.962221127255121,0,0,0,2.15252686335615,0,2.21715076768338,1.37834040124176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.47748896947538,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.638002319463839,0,1.06606955203727,0,0,0,0,0,0,0,0,1.47698645169619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195984794828755,0.174118413160805,0,0,0,0,0,0,0,0,0.137041924646751,0,0,0,0,0,0,0,0,0,0.14405479798815,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107410557042488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211312123358627,0,0,0,0,0,0.559518030877778,1.24415452006595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115525666150338,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207216164163037,0,0,0,0,0,0,0,0,0,0.223710863595585,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0802413666891683,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106727345877715,0,0,0,0,0,0,0,0 | |||
|short_description=p12@LAMC2 | |||
}} |
Latest revision as of 02:33, 19 September 2015
Short description: | p12@LAMC2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_12_at_LAMC2_5end |
Coexpression cluster: | C268_Mallassezderived_Urothelial_Gingival_Small_Bronchial_Tracheal_Prostate |
Association with transcript: | -149bp_to_ENST00000476255_5end |
EntrezGene: | LAMC2 |
HGNC: | 6493 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
general ecto-epithelial cell | 3.90e-25 | 14 |
transitional epithelial cell | 2.17e-23 | 4 |
urothelial cell | 2.17e-23 | 4 |
keratinocyte | 2.11e-18 | 5 |
stratified squamous epithelial cell | 1.93e-15 | 6 |
keratin accumulating cell | 1.93e-15 | 6 |
stratified epithelial cell | 1.93e-15 | 6 |
keratinizing barrier epithelial cell | 1.93e-15 | 6 |
epithelial fate stem cell | 1.93e-15 | 6 |
stratified epithelial stem cell | 1.93e-15 | 6 |
surface ectodermal cell | 1.93e-15 | 6 |
epithelial cell of Malassez | 1.51e-14 | 3 |
gingival epithelial cell | 3.39e-14 | 3 |
ecto-epithelial cell | 1.28e-13 | 34 |
respiratory epithelial cell | 1.10e-12 | 13 |
epithelial cell | 1.23e-11 | 253 |
endo-epithelial cell | 4.39e-11 | 42 |
epidermal cell | 1.74e-10 | 9 |
endodermal cell | 7.89e-08 | 58 |
Ontology term | p-value | n |
---|---|---|
urothelium | 7.61e-19 | 5 |
transitional epithelium | 8.27e-16 | 6 |
gingival epithelium | 3.39e-14 | 3 |
jaw skeleton | 3.83e-11 | 4 |
splanchnocranium | 3.83e-11 | 4 |
primary subdivision of cranial skeletal system | 4.32e-09 | 5 |
protuberance | 1.02e-07 | 6 |
pharyngeal arch | 1.02e-07 | 6 |
embryonic head | 1.02e-07 | 6 |
surface structure | 5.78e-07 | 99 |