FFCP PHASE1:Hg19::chr6:50789717..50789729,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr6:50789717..50789729,+
|short_description=p4@TFAP2B
|description=CAGE_peak_4_at_TFAP2B_5end
|association_with_transcript=219bp_to_ENST00000489228_5end
|Entr...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=7021 | |EntrezGene=7021 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11743 | |HGNC=11743 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=219bp_to_ENST00000489228_5end | |||
|cluster_id=chr6:50789717..50789729,+ | |||
|coexpression_cluster_id=C108 | |||
|description=CAGE_peak_4_at_TFAP2B_5end | |||
|id=chr6:50789717..50789729,+ | |||
|ontology_enrichment_celltype=CL:1000507!2.29e-11!12;CL:1000494!2.29e-11!12;CL:0000075!7.41e-10!27;CL:0002077!1.48e-08!33;CL:0002322!3.31e-08!5;CL:1000449!5.59e-08!16;CL:0000197!8.32e-08!6;CL:0000098!8.32e-08!6;CL:0002167!8.32e-08!6;CL:0000710!4.98e-07!20;CL:1000497!7.32e-07!18;CL:0002518!7.32e-07!18;CL:0000239!8.54e-07!3;CL:1000615!8.54e-07!3;CL:0002306!8.54e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:1000507;9.53e-16;10!CL:1000494;9.53e-16;10!CL:0000239;1.96e-14;3!CL:1000615;1.96e-14;3!CL:0002306;1.96e-14;3!CL:0000075;9.45e-12;27!CL:0000123;1.57e-10;2!CL:0000242;1.57e-10;2!CL:1000449;2.76e-10;15!CL:0002321;4.40e-10;15!CL:0002367;5.14e-10;2!CL:0000333;5.12e-09;5!CL:1000497;5.33e-09;17!CL:0002518;5.33e-09;17!CL:0000197;2.03e-07;6!CL:0000098;2.03e-07;6!CL:0002167;2.03e-07;6!CL:0000710;2.56e-07;20 | |||
|ontology_enrichment_celltype_v019_2=CL:1000507,9.67e-16,10;CL:1000494,9.67e-16,10;CL:0000239,2.01e-14,3;CL:1000615,2.01e-14,3;CL:0002306,2.01e-14,3;CL:0000075,7.55e-12,27;CL:0000242,1.53e-10,2;CL:1000449,2.78e-10,15;CL:0002367,4.81e-10,2;CL:1000497,5.38e-09,17;CL:0002518,5.38e-09,17;CL:0000197,1.68e-07,6;CL:0000098,1.68e-07,6;CL:0002167,1.68e-07,6;CL:0000710,2.09e-07,20;CL:0002077,3.19e-07,34;CL:0000133,8.29e-07,59 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:3095!8.01e-09!22;DOID:2994!8.01e-09!22 | |||
|ontology_enrichment_disease_v019=DOID:171;1.46e-11;10!DOID:169;1.41e-07;6!DOID:3095;5.33e-07;22!DOID:2994;5.33e-07;22 | |||
|ontology_enrichment_disease_v019_2=DOID:171,1.45e-11,10;DOID:169,1.41e-07,6;DOID:3095,5.45e-07,22;DOID:2994,5.45e-07,22 | |||
|ontology_enrichment_uberon=UBERON:0009773!2.29e-11!12;UBERON:0001231!2.29e-11!12;UBERON:0004810!2.29e-11!12;UBERON:0000080!2.09e-10!18;UBERON:0002120!2.09e-10!18;UBERON:0004875!2.09e-10!18;UBERON:0005721!2.09e-10!18;UBERON:0005754!2.09e-10!18;UBERON:0007297!2.09e-10!18;UBERON:0002113!3.83e-10!27;UBERON:0003918!3.83e-10!27;UBERON:0005095!3.83e-10!27;UBERON:0007687!3.83e-10!27;UBERON:0006555!2.69e-09!17;UBERON:0005103!2.69e-09!17;UBERON:0000083!2.69e-09!17;UBERON:0009201!2.69e-09!17;UBERON:0004819!2.69e-09!17;UBERON:0006553!2.69e-09!17;UBERON:0003074!2.69e-09!17;UBERON:0003060!2.69e-09!17;UBERON:0000489!3.16e-09!32;UBERON:0004876!4.45e-09!20;UBERON:0003135!6.65e-09!11;UBERON:0003887!1.64e-08!21;UBERON:0004211!5.59e-08!16;UBERON:0001285!5.59e-08!16;UBERON:0007684!5.59e-08!16;UBERON:0003220!5.59e-08!16;UBERON:0004208!5.59e-08!16;UBERON:0000058!1.16e-07!26;UBERON:0000473!5.08e-07!8;UBERON:0000924!7.10e-07!173;UBERON:0006601!7.10e-07!173;UBERON:0006853!8.54e-07!3;UBERON:0007685!8.54e-07!3;UBERON:0004134!8.54e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0004211;9.53e-16;10!UBERON:0009773;9.53e-16;10!UBERON:0001231;9.53e-16;10!UBERON:0004810;9.53e-16;10!UBERON:0006853;1.96e-14;3!UBERON:0007685;1.96e-14;3!UBERON:0004134;1.96e-14;3!UBERON:0001044;1.03e-11;6!UBERON:0003293;1.03e-11;6!UBERON:0003294;1.03e-11;6!UBERON:0010047;1.03e-11;6!UBERON:0003408;1.03e-11;6!UBERON:0000167;1.03e-11;6!UBERON:0002113;7.02e-11;24!UBERON:0011143;7.02e-11;24!UBERON:0006555;2.76e-10;15!UBERON:0004819;2.76e-10;15!UBERON:0001285;2.76e-10;15!UBERON:0007684;2.76e-10;15!UBERON:0005969;5.14e-10;2!UBERON:0003956;5.14e-10;2!UBERON:0001829;6.87e-10;2!UBERON:0000013;5.12e-09;5!UBERON:0002410;5.12e-09;5!UBERON:0000489;8.86e-09;29!UBERON:0006554;1.92e-08;30!UBERON:0001008;1.92e-08;30!UBERON:0001041;1.88e-07;14!UBERON:0006947;7.71e-07;3!UBERON:0004054;7.71e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004810,9.67e-16,10;UBERON:0006853,2.01e-14,3;UBERON:0007685,2.01e-14,3;UBERON:0004134,2.01e-14,3;UBERON:0006555,5.32e-13,16;UBERON:0004819,5.32e-13,16;UBERON:0002113,1.27e-12,26;UBERON:0003918,1.27e-12,26;UBERON:0011143,1.27e-12,26;UBERON:0005095,1.27e-12,26;UBERON:0007687,1.27e-12,26;UBERON:0001044,1.09e-11,6;UBERON:0003293,1.09e-11,6;UBERON:0003294,1.09e-11,6;UBERON:0010047,1.09e-11,6;UBERON:0000167,1.09e-11,6;UBERON:0000489,2.54e-10,31;UBERON:0004211,2.78e-10,15;UBERON:0009773,2.78e-10,15;UBERON:0001231,2.78e-10,15;UBERON:0001285,2.78e-10,15;UBERON:0007684,2.78e-10,15;UBERON:0004208,2.78e-10,15;UBERON:0005969,4.81e-10,2;UBERON:0003956,4.81e-10,2;UBERON:0001829,6.29e-10,2;UBERON:0000013,5.13e-09,5;UBERON:0002410,5.13e-09,5;UBERON:0003408,4.80e-07,10;UBERON:0006947,9.33e-07,3;UBERON:0004054,9.33e-07,3 | |||
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| ||
|short_description=p4@TFAP2B | |||
}} | }} |
Latest revision as of 05:29, 19 September 2015
Short description: | p4@TFAP2B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_TFAP2B_5end |
Coexpression cluster: | C108_breast_hepatoblastoma_MCF7_parotid_salivary_submaxillary_prostate |
Association with transcript: | 219bp_to_ENST00000489228_5end |
EntrezGene: | TFAP2B |
HGNC: | 11743 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney tubule cell | 9.67e-16 | 10 |
nephron tubule epithelial cell | 9.67e-16 | 10 |
brush border epithelial cell | 2.01e-14 | 3 |
kidney cortex tubule cell | 2.01e-14 | 3 |
epithelial cell of proximal tubule | 2.01e-14 | 3 |
columnar/cuboidal epithelial cell | 7.55e-12 | 27 |
Merkel cell | 1.53e-10 | 2 |
epithelial cell of nephron | 2.78e-10 | 15 |
trabecular meshwork cell | 4.81e-10 | 2 |
kidney cell | 5.38e-09 | 17 |
kidney epithelial cell | 5.38e-09 | 17 |
receptor cell | 1.68e-07 | 6 |
sensory epithelial cell | 1.68e-07 | 6 |
olfactory epithelial cell | 1.68e-07 | 6 |
neurecto-epithelial cell | 2.09e-07 | 20 |
ecto-epithelial cell | 3.19e-07 | 34 |
neurectodermal cell | 8.29e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
nephron tubule epithelium | 9.67e-16 | 10 |
renal cortex tubule | 2.01e-14 | 3 |
region of nephron tubule | 2.01e-14 | 3 |
proximal tubule | 2.01e-14 | 3 |
excretory tube | 5.32e-13 | 16 |
kidney epithelium | 5.32e-13 | 16 |
kidney | 1.27e-12 | 26 |
kidney mesenchyme | 1.27e-12 | 26 |
upper urinary tract | 1.27e-12 | 26 |
kidney rudiment | 1.27e-12 | 26 |
kidney field | 1.27e-12 | 26 |
saliva-secreting gland | 1.09e-11 | 6 |
gland of oral region | 1.09e-11 | 6 |
gland of foregut | 1.09e-11 | 6 |
oral gland | 1.09e-11 | 6 |
oral cavity | 1.09e-11 | 6 |
cavitated compound organ | 2.54e-10 | 31 |
nephron epithelium | 2.78e-10 | 15 |
renal tubule | 2.78e-10 | 15 |
nephron tubule | 2.78e-10 | 15 |
nephron | 2.78e-10 | 15 |
uriniferous tubule | 2.78e-10 | 15 |
nephrogenic mesenchyme | 2.78e-10 | 15 |
reticulum trabeculare | 4.81e-10 | 2 |
aqueous drainage system | 4.81e-10 | 2 |
major salivary gland | 6.29e-10 | 2 |
sympathetic nervous system | 5.13e-09 | 5 |
autonomic nervous system | 5.13e-09 | 5 |
gland of gut | 4.80e-07 | 10 |
male genital duct | 9.33e-07 | 3 |
internal male genitalia | 9.33e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 1.45e-11 | 10 |
neuroendocrine tumor | 1.41e-07 | 6 |
germ cell and embryonal cancer | 5.45e-07 | 22 |
germ cell cancer | 5.45e-07 | 22 |