FFCP PHASE1:Hg19::chr11:65430371..65430399,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr11:65430371..65430399,-
|short_description=p1@RELA
|description=CAGE_peak_1_at_RELA_5end
|association_with_transcript=0bp_to_ENST00000426617,ENST00000525301,...") |
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(11 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5970 | |EntrezGene=5970 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9955 | |HGNC=9955 | ||
|UniProt=Q96CP1, | |TSSclassifier=strong | ||
|UniProt=Q96CP1,E9PSE4,E9PN69,E9PNK5,E9PMD5,E9PKH5,E9PM47,B4E082 | |||
|association_with_transcript=0bp_to_ENST00000426617,ENST00000525301,ENST00000525658,ENST00000527074,ENST00000527909,ENST00000531238,ENST00000531484,ENST00000532879,ENST00000532999,ENST00000533546,ENST00000545816_5end | |||
|cluster_id=chr11:65430371..65430399,- | |||
|description=CAGE_peak_1_at_RELA_5end | |||
|id=chr11:65430371..65430399,- | |||
|ontology_enrichment_celltype=CL:0002057!8.09e-11!42;CL:0000860!4.49e-10!45;CL:0000115!5.32e-10!35;CL:0002078!1.52e-09!44;CL:0002139!8.58e-09!24;CL:0000766!3.01e-08!76;CL:0000071!7.48e-08!18;CL:0002546!7.48e-08!18;CL:0000076!8.32e-08!62;CL:0000213!1.40e-07!57;CL:0000215!1.40e-07!57;CL:0000222!6.42e-07!119 | |||
|ontology_enrichment_celltype_v019=CL:0000860;4.62e-15;33!CL:0002057;4.62e-15;33!CL:0000473;8.17e-10;39!CL:0000234;8.17e-10;39!CL:0002139;8.18e-09;24!CL:0000115;1.22e-08;36!CL:0000071;6.88e-08;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,8.09e-11,42;CL:0002057,8.09e-11,42;CL:0000115,2.54e-10,36;CL:0002078,7.47e-10,45;CL:0002139,8.58e-09,24;CL:0000473,1.20e-08,48;CL:0000234,1.20e-08,48;CL:0000766,1.91e-08,72;CL:0000213,7.44e-08,58;CL:0000215,7.44e-08,58;CL:0000071,7.48e-08,18;CL:0002546,7.48e-08,18;CL:0000076,1.51e-07,63;CL:0000222,5.41e-07,121 | |||
|ontology_enrichment_development_v019=CL:0002057;1.33e-08;42!CL:0002546;6.88e-08;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003081!1.73e-14!216;UBERON:0000055!9.92e-13!69;UBERON:0001981!5.95e-11!60;UBERON:0007500!5.95e-11!60;UBERON:0004537!5.95e-11!60;UBERON:0006965!5.95e-11!60;UBERON:0002049!4.51e-10!79;UBERON:0007798!4.51e-10!79;UBERON:0003914!7.67e-10!118;UBERON:0004872!7.80e-09!84;UBERON:0001009!4.62e-08!113;UBERON:0001637!5.42e-08!42;UBERON:0003509!5.42e-08!42;UBERON:0004572!5.42e-08!42;UBERON:0001986!7.48e-08!18;UBERON:0004638!7.48e-08!18;UBERON:0004852!7.48e-08!18;UBERON:0004535!8.26e-08!110;UBERON:0000487!2.05e-07!22;UBERON:0002193!7.49e-07!112;UBERON:0006914!9.24e-07!25 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;6.88e-08;18!UBERON:0001986;6.88e-08;18!UBERON:0004852;6.88e-08;18!UBERON:0000487;1.94e-07;22!UBERON:0003914;6.37e-07;74!UBERON:0006914;8.80e-07;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003081,2.51e-13,203;UBERON:0000055,1.50e-12,68;UBERON:0007500,8.89e-11,59;UBERON:0001981,8.89e-11,59;UBERON:0004537,8.89e-11,59;UBERON:0006965,8.89e-11,59;UBERON:0003914,4.99e-10,117;UBERON:0002049,6.68e-10,78;UBERON:0007798,6.68e-10,78;UBERON:0004872,1.14e-08,83;UBERON:0001637,5.42e-08,42;UBERON:0003509,5.42e-08,42;UBERON:0004572,5.42e-08,42;UBERON:0001009,6.55e-08,112;UBERON:0004638,7.48e-08,18;UBERON:0001986,7.48e-08,18;UBERON:0004852,7.48e-08,18;UBERON:0004535,1.17e-07,109;UBERON:0000487,2.05e-07,22;UBERON:0002405,6.09e-07,93;UBERON:0002193,6.40e-07,108;UBERON:0006914,9.24e-07,25 | |||
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| ||
|short_description=p1@RELA | |||
}} | }} |
Latest revision as of 10:34, 19 September 2015
Short description: | p1@RELA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RELA_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000426617, ENST00000525301, ENST00000525658, ENST00000527074, ENST00000527909, ENST00000531238, ENST00000531484, ENST00000532879, ENST00000532999, ENST00000533546, ENST00000545816_5end |
EntrezGene: | RELA |
HGNC: | 9955 |
UniProt: | Q96CP1E9PSE4E9PN69E9PNK5E9PMD5E9PKH5E9PM47B4E082 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 8.09e-11 | 42 |
CD14-positive, CD16-negative classical monocyte | 8.09e-11 | 42 |
endothelial cell | 2.54e-10 | 36 |
meso-epithelial cell | 7.47e-10 | 45 |
endothelial cell of vascular tree | 8.58e-09 | 24 |
defensive cell | 1.20e-08 | 48 |
phagocyte | 1.20e-08 | 48 |
myeloid leukocyte | 1.91e-08 | 72 |
lining cell | 7.44e-08 | 58 |
barrier cell | 7.44e-08 | 58 |
blood vessel endothelial cell | 7.48e-08 | 18 |
embryonic blood vessel endothelial progenitor cell | 7.48e-08 | 18 |
squamous epithelial cell | 1.51e-07 | 63 |
mesodermal cell | 5.41e-07 | 121 |
Ontology term | p-value | n |
---|---|---|
lateral plate mesoderm | 2.51e-13 | 203 |
vessel | 1.50e-12 | 68 |
epithelial tube open at both ends | 8.89e-11 | 59 |
blood vessel | 8.89e-11 | 59 |
blood vasculature | 8.89e-11 | 59 |
vascular cord | 8.89e-11 | 59 |
epithelial tube | 4.99e-10 | 117 |
vasculature | 6.68e-10 | 78 |
vascular system | 6.68e-10 | 78 |
splanchnic layer of lateral plate mesoderm | 1.14e-08 | 83 |
artery | 5.42e-08 | 42 |
arterial blood vessel | 5.42e-08 | 42 |
arterial system | 5.42e-08 | 42 |
circulatory system | 6.55e-08 | 112 |
blood vessel endothelium | 7.48e-08 | 18 |
endothelium | 7.48e-08 | 18 |
cardiovascular system endothelium | 7.48e-08 | 18 |
cardiovascular system | 1.17e-07 | 109 |
simple squamous epithelium | 2.05e-07 | 22 |
immune system | 6.09e-07 | 93 |
hemolymphoid system | 6.40e-07 | 108 |
squamous epithelium | 9.24e-07 | 25 |