FFCP PHASE1:Hg19::chr2:201980867..201980923,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8837 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1876 | |||
|TSSclassifier=strong | |||
|UniProt=O15519,C9JK38,B4DJE0 | |||
|association_with_transcript=0bp_to_ENST00000340870,ENST00000341222,ENST00000343375,ENST00000355558,ENST00000443227,NM_001127184,NM_001202516,NM_001202517,NM_001202519,NM_003879_5end | |||
|cluster_id=chr2:201980867..201980923,+ | |||
|coexpression_cluster_id=C175 | |||
|description=CAGE_peak_1_at_CFLAR_5end | |||
|id=chr2:201980867..201980923,+ | |||
|ontology_enrichment_celltype=CL:0002057!1.09e-24!42;CL:0000766!4.97e-22!76;CL:0000738!2.04e-20!140;CL:0000860!2.33e-20!45;CL:0002009!5.19e-18!65;CL:0000557!7.24e-18!71;CL:0002194!1.34e-17!63;CL:0000576!1.34e-17!63;CL:0000040!1.34e-17!63;CL:0000559!1.34e-17!63;CL:0000839!2.15e-17!70;CL:0002031!1.44e-15!124;CL:0002087!2.06e-15!119;CL:0000037!9.75e-10!172;CL:0000566!9.75e-10!172;CL:0002032!1.50e-08!165;CL:0000837!1.50e-08!165;CL:0000791!1.96e-08!18;CL:0000789!1.96e-08!18;CL:0002420!1.96e-08!18;CL:0002419!1.96e-08!18;CL:0000790!1.96e-08!18;CL:0000763!3.06e-08!112;CL:0000049!3.06e-08!112;CL:0000988!4.81e-08!182 | |||
|ontology_enrichment_celltype_v019=CL:0000860;7.88e-19;33!CL:0002057;7.88e-19;33!CL:0000473;3.24e-16;39!CL:0000234;3.24e-16;39!CL:0000576;1.42e-14;48!CL:0000766;5.58e-12;69!CL:0000791;1.95e-08;18!CL:0000789;1.95e-08;18!CL:0002419;1.95e-08;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,4.21e-25,72;CL:0000473,6.79e-25,48;CL:0000234,6.79e-25,48;CL:0000860,1.09e-24,42;CL:0002057,1.09e-24,42;CL:0000738,2.41e-22,136;CL:0002009,5.42e-21,61;CL:0000557,1.20e-20,67;CL:0002194,1.34e-20,59;CL:0000576,1.34e-20,59;CL:0000040,1.34e-20,59;CL:0000559,1.34e-20,59;CL:0000839,3.76e-20,66;CL:0002031,2.62e-17,120;CL:0002087,3.47e-17,115;CL:0000037,8.64e-11,168;CL:0002032,1.54e-09,161;CL:0000837,1.54e-09,161;CL:0000763,1.90e-09,108;CL:0000049,1.90e-09,108;CL:0000988,3.12e-09,177;CL:0000791,1.96e-08,18;CL:0000789,1.96e-08,18;CL:0002420,1.96e-08,18;CL:0002419,1.96e-08,18;CL:0000790,1.96e-08,18 | |||
|ontology_enrichment_development_v019=CL:0002057;5.12e-18;42!CL:0000790;1.95e-08;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!2.71e-20!102;UBERON:0003061!2.71e-20!102;UBERON:0002193!1.87e-18!112;UBERON:0007023!1.44e-17!115;UBERON:0002371!2.11e-15!80;UBERON:0001474!2.24e-13!86;UBERON:0004765!1.87e-12!101;UBERON:0001434!1.87e-12!101;UBERON:0002405!8.18e-10!115;UBERON:0002204!5.87e-09!167;UBERON:0003081!1.23e-08!216 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.17e-22,98;UBERON:0003061,1.17e-22,98;UBERON:0002193,1.55e-20,108;UBERON:0002371,1.05e-17,76;UBERON:0007023,1.32e-17,114;UBERON:0002405,1.35e-15,93;UBERON:0001474,2.28e-15,82;UBERON:0004765,1.16e-14,90;UBERON:0001434,8.33e-14,100;UBERON:0003081,1.48e-10,203;UBERON:0002204,5.81e-10,167;UBERON:0000926,1.84e-07,315;UBERON:0004120,1.84e-07,315;UBERON:0006603,1.84e-07,315 | |||
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| |||
|short_description=p1@CFLAR | |||
}} |
Latest revision as of 11:50, 19 September 2015
Short description: | p1@CFLAR |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CFLAR_5end |
Coexpression cluster: | C175_Eosinophils_Neutrophils_CD4_Basophils_CD19_CD8_Natural |
Association with transcript: | 0bp_to_ENST00000340870, ENST00000341222, ENST00000343375, ENST00000355558, ENST00000443227, NM_001127184, NM_001202516, NM_001202517, NM_001202519, NM_003879_5end |
EntrezGene: | CFLAR |
HGNC: | 1876 |
UniProt: | O15519C9JK38B4DJE0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 4.21e-25 | 72 |
defensive cell | 6.79e-25 | 48 |
phagocyte | 6.79e-25 | 48 |
classical monocyte | 1.09e-24 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.09e-24 | 42 |
leukocyte | 2.41e-22 | 136 |
macrophage dendritic cell progenitor | 5.42e-21 | 61 |
granulocyte monocyte progenitor cell | 1.20e-20 | 67 |
monopoietic cell | 1.34e-20 | 59 |
monocyte | 1.34e-20 | 59 |
monoblast | 1.34e-20 | 59 |
promonocyte | 1.34e-20 | 59 |
myeloid lineage restricted progenitor cell | 3.76e-20 | 66 |
hematopoietic lineage restricted progenitor cell | 2.62e-17 | 120 |
nongranular leukocyte | 3.47e-17 | 115 |
hematopoietic stem cell | 8.64e-11 | 168 |
hematopoietic oligopotent progenitor cell | 1.54e-09 | 161 |
hematopoietic multipotent progenitor cell | 1.54e-09 | 161 |
myeloid cell | 1.90e-09 | 108 |
common myeloid progenitor | 1.90e-09 | 108 |
hematopoietic cell | 3.12e-09 | 177 |
mature alpha-beta T cell | 1.96e-08 | 18 |
alpha-beta T cell | 1.96e-08 | 18 |
immature T cell | 1.96e-08 | 18 |
mature T cell | 1.96e-08 | 18 |
immature alpha-beta T cell | 1.96e-08 | 18 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.17e-22 | 98 |
blood island | 1.17e-22 | 98 |
hemolymphoid system | 1.55e-20 | 108 |
bone marrow | 1.05e-17 | 76 |
adult organism | 1.32e-17 | 114 |
immune system | 1.35e-15 | 93 |
bone element | 2.28e-15 | 82 |
skeletal element | 1.16e-14 | 90 |
skeletal system | 8.33e-14 | 100 |
lateral plate mesoderm | 1.48e-10 | 203 |
musculoskeletal system | 5.81e-10 | 167 |
mesoderm | 1.84e-07 | 315 |
mesoderm-derived structure | 1.84e-07 | 315 |
presumptive mesoderm | 1.84e-07 | 315 |