FFCP PHASE1:Hg19::chr11:66624527..66624592,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr11:66624527..66624592,+ to FFCP PHASE1:Hg19::chr11:66624527..66624592,+: NSchange) |
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(11 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=78999 | |EntrezGene=78999 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28456 | |HGNC=28456 | ||
|TSSclassifier=strong | |||
|UniProt=E7ENX6,Q6IPL6 | |UniProt=E7ENX6,Q6IPL6 | ||
|association_with_transcript=0bp_to_ENST00000393952,uc001ojq.1_5end | |||
|cluster_id=chr11:66624527..66624592,+ | |||
|description=CAGE_peak_1_at_LRFN4_5end | |||
|id=chr11:66624527..66624592,+ | |||
|ontology_enrichment_celltype=CL:0000066!1.42e-21!254;CL:0000220!2.22e-18!246;CL:0002321!2.61e-18!248;CL:0000548!1.70e-14!679;CL:0000004!1.70e-14!679;CL:0000255!1.70e-14!679;CL:0000012!6.30e-14!682;CL:0002078!2.03e-10!44;CL:0000115!9.30e-10!35;CL:0000222!1.03e-09!119;CL:1000449!1.29e-09!16;CL:0000055!2.97e-09!180;CL:1000497!1.85e-08!18;CL:0002518!1.85e-08!18;CL:0002371!2.39e-08!591;CL:0002681!7.99e-08!13;CL:0002584!7.99e-08!13;CL:0002139!8.66e-08!24;CL:0000003!1.64e-07!722;CL:1000507!2.22e-07!12;CL:1000494!2.22e-07!12;CL:0002076!3.20e-07!43;CL:0000144!6.24e-07!625;CL:0000071!6.88e-07!18;CL:0002546!6.88e-07!18 | |||
|ontology_enrichment_celltype_v019=CL:1000449;1.07e-09;15!CL:0000115;1.20e-08;36!CL:1000497;1.61e-08;17!CL:0002518;1.61e-08;17!CL:0002681;6.54e-08;12!CL:0002584;6.54e-08;12!CL:0002139;1.01e-07;24!CL:0002078;1.77e-07;45!CL:1000507;5.74e-07;10!CL:1000494;5.74e-07;10!CL:0000071;6.39e-07;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,2.04e-21,253;CL:0002321,7.63e-19,250;CL:0002078,7.19e-11,45;CL:0000115,3.21e-10,36;CL:0000222,4.24e-10,121;CL:1000449,1.09e-09,15;CL:1000497,1.56e-08,17;CL:0002518,1.56e-08,17;CL:0002681,6.90e-08,12;CL:0002584,6.90e-08,12;CL:0002139,8.54e-08,24;CL:0002076,4.78e-07,42;CL:1000507,5.89e-07,10;CL:1000494,5.89e-07,10;CL:0000071,6.80e-07,18;CL:0002546,6.80e-07,18 | |||
|ontology_enrichment_development_v019=CL:0002546;6.39e-07;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004211!1.29e-09!16;UBERON:0001285!1.29e-09!16;UBERON:0007684!1.29e-09!16;UBERON:0003220!1.29e-09!16;UBERON:0004208!1.29e-09!16;UBERON:0000119!3.31e-09!312;UBERON:0000483!4.98e-09!309;UBERON:0002049!7.87e-09!79;UBERON:0007798!7.87e-09!79;UBERON:0000481!8.94e-09!347;UBERON:0006555!2.04e-08!17;UBERON:0005103!2.04e-08!17;UBERON:0000083!2.04e-08!17;UBERON:0009201!2.04e-08!17;UBERON:0004819!2.04e-08!17;UBERON:0006553!2.04e-08!17;UBERON:0003074!2.04e-08!17;UBERON:0003060!2.04e-08!17;UBERON:0001225!7.99e-08!13;UBERON:0008987!7.99e-08!13;UBERON:0000064!9.68e-08!219;UBERON:0000080!2.09e-07!18;UBERON:0002120!2.09e-07!18;UBERON:0004875!2.09e-07!18;UBERON:0005721!2.09e-07!18;UBERON:0005754!2.09e-07!18;UBERON:0007297!2.09e-07!18;UBERON:0006914!2.17e-07!25;UBERON:0009773!2.22e-07!12;UBERON:0001231!2.22e-07!12;UBERON:0004810!2.22e-07!12;UBERON:0000487!2.97e-07!22;UBERON:0000477!5.19e-07!286;UBERON:0001851!5.70e-07!16;UBERON:0001986!6.88e-07!18;UBERON:0004638!6.88e-07!18;UBERON:0004852!6.88e-07!18;UBERON:0003914!7.54e-07!118 | |||
|ontology_enrichment_uberon_v019=UBERON:0006555;1.07e-09;15!UBERON:0004819;1.07e-09;15!UBERON:0001285;1.07e-09;15!UBERON:0007684;1.07e-09;15!UBERON:0001225;6.54e-08;12!UBERON:0008987;6.54e-08;12!UBERON:0000353;1.19e-07;15!UBERON:0006554;1.59e-07;30!UBERON:0001008;1.59e-07;30!UBERON:0006914;2.45e-07;25!UBERON:0003914;2.58e-07;74!UBERON:0000487;2.91e-07;22!UBERON:0000490;3.85e-07;33!UBERON:0001851;5.55e-07;15!UBERON:0004211;5.74e-07;10!UBERON:0009773;5.74e-07;10!UBERON:0001231;5.74e-07;10!UBERON:0004810;5.74e-07;10!UBERON:0004638;6.39e-07;18!UBERON:0001986;6.39e-07;18!UBERON:0004852;6.39e-07;18 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004211,1.09e-09,15;UBERON:0009773,1.09e-09,15;UBERON:0001231,1.09e-09,15;UBERON:0001285,1.09e-09,15;UBERON:0007684,1.09e-09,15;UBERON:0004208,1.09e-09,15;UBERON:0000119,2.89e-09,309;UBERON:0002049,2.90e-09,78;UBERON:0007798,2.90e-09,78;UBERON:0000483,4.34e-09,306;UBERON:0006555,1.97e-08,16;UBERON:0004819,1.97e-08,16;UBERON:0001225,6.90e-08,12;UBERON:0008987,6.90e-08,12;UBERON:0000353,1.29e-07,15;UBERON:0006914,2.14e-07,25;UBERON:0000487,2.93e-07,22;UBERON:0000055,4.89e-07,68;UBERON:0004810,5.89e-07,10;UBERON:0007503,5.92e-07,78;UBERON:0001851,5.94e-07,15;UBERON:0004638,6.80e-07,18;UBERON:0001986,6.80e-07,18;UBERON:0004852,6.80e-07,18;UBERON:0003914,8.54e-07,117 | |||
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| ||
|short_description=p1@LRFN4 | |||
}} | }} |
Latest revision as of 16:04, 19 September 2015
Short description: | p1@LRFN4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LRFN4_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000393952, uc001ojq.1_5end |
EntrezGene: | LRFN4 |
HGNC: | 28456 |
UniProt: | E7ENX6Q6IPL6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 2.04e-21 | 253 |
embryonic cell | 7.63e-19 | 250 |
meso-epithelial cell | 7.19e-11 | 45 |
endothelial cell | 3.21e-10 | 36 |
mesodermal cell | 4.24e-10 | 121 |
epithelial cell of nephron | 1.09e-09 | 15 |
kidney cell | 1.56e-08 | 17 |
kidney epithelial cell | 1.56e-08 | 17 |
kidney cortical cell | 6.90e-08 | 12 |
renal cortical epithelial cell | 6.90e-08 | 12 |
endothelial cell of vascular tree | 8.54e-08 | 24 |
endo-epithelial cell | 4.78e-07 | 42 |
kidney tubule cell | 5.89e-07 | 10 |
nephron tubule epithelial cell | 5.89e-07 | 10 |
blood vessel endothelial cell | 6.80e-07 | 18 |
embryonic blood vessel endothelial progenitor cell | 6.80e-07 | 18 |
Ontology term | p-value | n |
---|---|---|
nephron epithelium | 1.09e-09 | 15 |
renal tubule | 1.09e-09 | 15 |
nephron tubule | 1.09e-09 | 15 |
nephron | 1.09e-09 | 15 |
uriniferous tubule | 1.09e-09 | 15 |
nephrogenic mesenchyme | 1.09e-09 | 15 |
cell layer | 2.89e-09 | 309 |
vasculature | 2.90e-09 | 78 |
vascular system | 2.90e-09 | 78 |
epithelium | 4.34e-09 | 306 |
excretory tube | 1.97e-08 | 16 |
kidney epithelium | 1.97e-08 | 16 |
cortex of kidney | 6.90e-08 | 12 |
renal parenchyma | 6.90e-08 | 12 |
parenchyma | 1.29e-07 | 15 |
squamous epithelium | 2.14e-07 | 25 |
simple squamous epithelium | 2.93e-07 | 22 |
vessel | 4.89e-07 | 68 |
nephron tubule epithelium | 5.89e-07 | 10 |
epithelial vesicle | 5.92e-07 | 78 |
cortex | 5.94e-07 | 15 |
blood vessel endothelium | 6.80e-07 | 18 |
endothelium | 6.80e-07 | 18 |
cardiovascular system endothelium | 6.80e-07 | 18 |
epithelial tube | 8.54e-07 | 117 |