FFCP PHASE1:Hg19::chr1:89530908..89530919,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr1:89530908..89530919,-
|short_description=p4@GBP1
|description=CAGE_peak_4_at_GBP1_5end
|association_with_transcript=0bp_to_ENST00000469194_5end
|EntrezGene...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=2633 | |EntrezGene=2633 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4182 | |HGNC=4182 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000469194_5end | |||
|cluster_id=chr1:89530908..89530919,- | |||
|coexpression_cluster_id=C7 | |||
|description=CAGE_peak_4_at_GBP1_5end | |||
|id=chr1:89530908..89530919,- | |||
|ontology_enrichment_celltype=CL:0002057!3.45e-25!42;CL:0000860!2.18e-23!45;CL:0002009!2.75e-20!65;CL:0002194!5.28e-20!63;CL:0000576!5.28e-20!63;CL:0000040!5.28e-20!63;CL:0000559!5.28e-20!63;CL:0000766!1.39e-19!76;CL:0000557!6.42e-17!71;CL:0000839!6.02e-16!70 | |||
|ontology_enrichment_celltype_v019=CL:0000860;5.63e-25;33!CL:0002057;5.63e-25;33!CL:0000576;6.43e-20;48!CL:0000473;1.46e-19;39!CL:0000234;1.46e-19;39!CL:0000766;3.65e-14;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,2.10e-35,42;CL:0002057,2.10e-35,42;CL:0000473,1.10e-33,48;CL:0000234,1.10e-33,48;CL:0002009,2.28e-29,61;CL:0002194,2.85e-29,59;CL:0000576,2.85e-29,59;CL:0000040,2.85e-29,59;CL:0000559,2.85e-29,59;CL:0000766,1.27e-28,72;CL:0000557,5.39e-25,67;CL:0000839,3.77e-24,66;CL:0000763,2.09e-13,108;CL:0000049,2.09e-13,108;CL:0000738,1.41e-08,136;CL:0002393,1.46e-08,9;CL:0002397,1.46e-08,9;CL:0002087,1.91e-08,115;CL:0000048,1.00e-07,427;CL:0002031,1.07e-07,120;CL:0000723,2.03e-07,433 | |||
|ontology_enrichment_development_v019=CL:0002057;3.18e-25;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002204!6.69e-18!167;UBERON:0002371!3.23e-16!80;UBERON:0004765!2.21e-15!101;UBERON:0001434!2.21e-15!101;UBERON:0002390!3.46e-15!102;UBERON:0003061!3.46e-15!102;UBERON:0001474!7.42e-15!86;UBERON:0002193!3.49e-14!112;UBERON:0002405!1.08e-13!115;UBERON:0003081!9.57e-08!216;UBERON:0000926!2.80e-07!448;UBERON:0004120!2.80e-07!448;UBERON:0006603!2.80e-07!448;UBERON:0000467!5.77e-07!625;UBERON:0000480!8.34e-07!626 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,4.00e-24,76;UBERON:0002405,1.12e-21,93;UBERON:0001474,1.13e-21,82;UBERON:0002204,1.29e-21,167;UBERON:0004765,3.07e-21,90;UBERON:0001434,1.75e-20,100;UBERON:0002390,3.44e-20,98;UBERON:0003061,3.44e-20,98;UBERON:0002193,9.45e-20,108;UBERON:0000926,2.02e-10,315;UBERON:0004120,2.02e-10,315;UBERON:0006603,2.02e-10,315;UBERON:0003081,2.36e-09,203 | |||
|phase1_expression=0.908391896352783,0.428201047781966,1.26858963686374,0,0.446961094427288,0,2.53299878168311,0,0.783556884599516,0,0.697801167972428,0,0,0.866364470720326,0.331397375727916,2.6893005858071,1.20538905604795,1.46062018077475,0.487932798790507,0.369363174230364,0.204000691244253,0.313454721478088,0.572471974262113,0.410623275218653,0.376627918784408,0,0.164201178899891,0.157421562627358,1.18009283054671,2.30297638858328,0.619264493264304,0,0.30120591877825,0,0,0,0.293600439334847,2.21598163412751,2.20598892217156,3.90619567288533,1.56740831967947,0.647787332037959,1.80302897343931,1.89017710413434,1.51150377475524,1.4555043671269,5.81072592264212,2.87817521615278,3.71647645074124,146.723120084297,110.405264514042,126.99095745017,14.1345729102014,2.5819387343353,5.41705946377367,3.20011977222428,1.91034305040492,5.8428105955722,31.2205570218321,11.5534449747394,10.8687311385837,121.055427168525,122.470685779682,92.4907708655946,47.0138966578306,14.1846306172785,29.272645702792,105.775688073089,64.1423989656848,122.494508413686,44.1941636922359,23.9380463391917,51.5833691528642,4.43636101255078,5.10250319916104,3.56419697364239,0.673971786878971,1.35159203557356,2.08943262706204,3.42015292489498,2.78483348078726,4.01861138282195,0,0,0,0,0,0.574752439954483,0,0,0,0,0.382273228125229,0,0.560508562981536,0,0.196709770113833,0,0.205601498999509,0,0,0,0,0.334231370655521,0.589211814949674,0.664601683750863,0.270803863765016,0.25618263945135,1.56071217071854,0.328875809207352,0.276350017785848,0.579606171470105,0,0,0,0.679856056185397,0.766440987203842,1.37450978193052,0.759059076058509,0,0,0,0.301150238155546,0.127986611154418,0,0.473554504088034,0.821127996921047,0,0,0.289648807765598,2.43806866313962,0,0.383587685530591,0.361439152384566,2.00535164254356,2.462390822334,0,4.37971383272372,5.38848457835187,3.76939975686359,2.3715392137144,1.44076983047484,0,0,1.9472843619281,1.0447784237956,0.26591592103773,0,0,0,0.198762407366705,0,0,0.56530794192401,0,0.275118041940067,0.208994966536811,0,1.06729878806013,0,0.402829317109147,0,1.70843440283719,0,0,0.17859945656816,0,0,0,0,0,9.22462922052443,50.4114343392823,0,1.49091585508596,1.13967460498122,2.91300197789081,0.286836620748814,0.354668382198357,1.12135520028461,1.06748995729705,0.74000264525148,0.311211035399766,0.269421344139376,0,0,0.576175924479999,0,0.624320153660641,0,0.747243402759005,0,0,0,0.61246251376468,0,0.309977343527296,9.50402285825643,3.21447008062124,0,0,0.673344455816265,0,0.277064115484183,1.31693286264251,0,2.70428506031874,0.340296549480063,0.358779271377724,1.92201649936711,1.69545520927649,0.300091096084402,0.721367704669072,1.54584324027377,0.37223371266318,0.675105328965065,0,2.27190396819703,2.57739716198438,0.646584227275248,0.710019185033229,0.806016785821122,0.67824236924195,1.35282597214308,2.18196896472668,1.72082757233402,0.121973706129595,0,0,0,0,0,12.5159625863853,6.43240938192885,0,0.928735856063958,2.16563844500876,0.118306800039844,0,0.482022059766964,0.441175890929576,0,0,0.269662616320329,0,0,0,0,0,0,0,1.96565443335525,0.590789906681404,0,0.245976877086227,0.857839051492628,0.878002283269004,0,0.100528972411631,1.20364978706088,0.651616610620649,0,1.44331342025273,0.231860809950154,2.23076519048061,3.60916119402685,2.77791307545966,2.09279567458058,0,0,0.246217006087397,1.8720341211139,0.743155811443641,2.81201501960331,5.20744597416465,2.97727704209012,0.358234090811393,0,0,0.492663237895943,0,0,0,0.12624243342638,0,0,0,0,0.102827492703324,0,0,0.112131084345361,0.43596006883328,0.2933531432838,0.775630294546667,0,0,3.72313363218819,1.04007436911366,0,0,0,2.00169191121407,0,0,0.65147236858747,2.13235169245527,0,6.02878754119172,4.35766729300147,4.29883862082845,2.43247561282381,0,2.10833939483032,0.958499421966331,1.14861935834114,0,1.01346914667305,0.410952645100767,0.895304816199478,0,0.197030760201927,0.646882724578552,0.385029108839245,0,0,0,0,0.637938751653163,6.74106321552464,0,7.45947924184864,0.613457458595699,0,0,2.9115920614313,3.92543775353756,2.20783381047509,1.7571212248907,0.300946099727719,0,0,1.32845119707087,1.65932251687533,3.0409265063829,0,0,0.620304078368662,1.2942852049117,0.960548020230999,0,0,0,0.496215615637554,0.61384789315225,0,0.768834895534206,2.04682899626681,0.482561763430822,1.48418066444991,2.46735510084249,1.06537035187876,2.54594183642808,0.519254429183621,0.348631135379878,0,1.20303882181971,0.0920809889358963,3.67406234126742,1.82091168006717,3.54035920390445,0,0.693138033939733,0,0,1.37217117560738,0,0,0.215915916102139,0,0,0,0,0,0.223874754722178,0,0,0.256450125116389,0.328014645699706,0.325378394664303,1.13345112812495,0.27470839445503,0.495056999523528,1.72279661398852,1.30012049207304,0,1.06337790121334,0,0.15350367472613,0.413509717453592,1.93356440762893,0,0.767039646744908,2.93805717634233,0.165284915360978,0.192190067365106,0.765676274967505,0.50578890427775,0,0.62962469366128,1.3940745403212,5.85263802334569,0.532306030317022,0,1.48259375283136,0.143124886741991,1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| ||
|short_description=p4@GBP1 | |||
}} | }} |
Latest revision as of 16:28, 19 September 2015
Short description: | p4@GBP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_GBP1_5end |
Coexpression cluster: | C7_CD14_Eosinophils_Neutrophils_Smooth_Basophils_Macrophage_Mast |
Association with transcript: | 0bp_to_ENST00000469194_5end |
EntrezGene: | GBP1 |
HGNC: | 4182 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 2.10e-35 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.10e-35 | 42 |
defensive cell | 1.10e-33 | 48 |
phagocyte | 1.10e-33 | 48 |
macrophage dendritic cell progenitor | 2.28e-29 | 61 |
monopoietic cell | 2.85e-29 | 59 |
monocyte | 2.85e-29 | 59 |
monoblast | 2.85e-29 | 59 |
promonocyte | 2.85e-29 | 59 |
myeloid leukocyte | 1.27e-28 | 72 |
granulocyte monocyte progenitor cell | 5.39e-25 | 67 |
myeloid lineage restricted progenitor cell | 3.77e-24 | 66 |
myeloid cell | 2.09e-13 | 108 |
common myeloid progenitor | 2.09e-13 | 108 |
leukocyte | 1.41e-08 | 136 |
intermediate monocyte | 1.46e-08 | 9 |
CD14-positive, CD16-positive monocyte | 1.46e-08 | 9 |
nongranular leukocyte | 1.91e-08 | 115 |
multi fate stem cell | 1.00e-07 | 427 |
hematopoietic lineage restricted progenitor cell | 1.07e-07 | 120 |
somatic stem cell | 2.03e-07 | 433 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 4.00e-24 | 76 |
immune system | 1.12e-21 | 93 |
bone element | 1.13e-21 | 82 |
musculoskeletal system | 1.29e-21 | 167 |
skeletal element | 3.07e-21 | 90 |
skeletal system | 1.75e-20 | 100 |
hematopoietic system | 3.44e-20 | 98 |
blood island | 3.44e-20 | 98 |
hemolymphoid system | 9.45e-20 | 108 |
mesoderm | 2.02e-10 | 315 |
mesoderm-derived structure | 2.02e-10 | 315 |
presumptive mesoderm | 2.02e-10 | 315 |
lateral plate mesoderm | 2.36e-09 | 203 |