FFCP PHASE1:Hg19::chr1:89591578..89591596,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2634 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4183 | |||
|TSSclassifier=strong | |||
|UniProt=P32456 | |||
|association_with_transcript=200bp_to_ENST00000370466_5end | |||
|cluster_id=chr1:89591578..89591596,- | |||
|coexpression_cluster_id=C7 | |||
|description=CAGE_peak_3_at_GBP2_5end | |||
|id=chr1:89591578..89591596,- | |||
|ontology_enrichment_celltype=CL:0002057!1.65e-62!42;CL:0000860!1.50e-57!45;CL:0002009!1.90e-47!65;CL:0002194!1.34e-46!63;CL:0000576!1.34e-46!63;CL:0000040!1.34e-46!63;CL:0000559!1.34e-46!63;CL:0000557!6.69e-45!71;CL:0000839!3.27e-43!70;CL:0000766!3.89e-41!76;CL:0002087!9.49e-35!119;CL:0002031!1.34e-34!124;CL:0000738!7.10e-32!140;CL:0000763!3.00e-28!112;CL:0000049!3.00e-28!112;CL:0002032!7.15e-26!165;CL:0000837!7.15e-26!165;CL:0000037!2.35e-25!172;CL:0000566!2.35e-25!172;CL:0000988!4.16e-23!182;CL:0002393!4.42e-08!9;CL:0002397!4.42e-08!9;CL:0000134!1.93e-07!358;CL:0002320!4.98e-07!365 | |||
|ontology_enrichment_celltype_v019=CL:0000860;3.51e-95;33!CL:0002057;3.51e-95;33!CL:0000473;5.69e-68;39!CL:0000234;5.69e-68;39!CL:0000576;2.63e-45;48!CL:0000766;4.63e-23;69!CL:0000763;5.05e-15;100!CL:0002087;1.63e-13;104!CL:0000738;2.40e-08;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,4.22e-92,42;CL:0002057,4.22e-92,42;CL:0000473,2.98e-80,48;CL:0000234,2.98e-80,48;CL:0002194,1.18e-63,59;CL:0000576,1.18e-63,59;CL:0000040,1.18e-63,59;CL:0000559,1.18e-63,59;CL:0002009,1.64e-61,61;CL:0000839,1.03e-56,66;CL:0000557,7.71e-56,67;CL:0000766,8.01e-52,72;CL:0000763,9.25e-34,108;CL:0000049,9.25e-34,108;CL:0002087,1.51e-31,115;CL:0002031,4.03e-30,120;CL:0000738,2.95e-26,136;CL:0002032,9.67e-22,161;CL:0000837,9.67e-22,161;CL:0000037,1.03e-20,168;CL:0000988,1.64e-19,177;CL:0000134,3.51e-08,354;CL:0002320,5.87e-08,361;CL:0000219,3.60e-07,386 | |||
|ontology_enrichment_development_v019=CL:0002057;7.52e-66;42!CL:0000049;1.45e-10;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!1.91e-38!80;UBERON:0002390!9.30e-36!102;UBERON:0003061!9.30e-36!102;UBERON:0001474!6.82e-35!86;UBERON:0002193!2.44e-31!112;UBERON:0004765!2.25e-29!101;UBERON:0001434!2.25e-29!101;UBERON:0002405!7.00e-27!115;UBERON:0003081!2.27e-14!216;UBERON:0002204!9.16e-14!167 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,5.52e-49,76;UBERON:0001474,3.08e-45,82;UBERON:0002390,2.75e-41,98;UBERON:0003061,2.75e-41,98;UBERON:0004765,5.20e-41,90;UBERON:0002405,1.31e-39,93;UBERON:0002193,3.11e-37,108;UBERON:0001434,1.15e-36,100;UBERON:0002204,7.42e-21,167;UBERON:0003081,1.71e-18,203;UBERON:0000926,8.25e-11,315;UBERON:0004120,8.25e-11,315;UBERON:0006603,8.25e-11,315;UBERON:0002384,1.18e-07,371 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.20326668482085,0.434021741431704,0.223915474239924,0,0,0.290796477559129,0,0.242584061187816,1.62700325833979,0.822335776043652,0.619412741790207,10.9323109082417,4.86705342405291,5.91205574721463,5.17118521104928,3.87290810150296,0,0.376484679085209,0.272906150057846,0.449446968890169,3.36692281607993,0.641858054152187,1.27867425159808,2.96866170168044,1.39624560335142,2.13112375266347,3.77272010217159,2.26954089876456,2.4912889959823,6.28121663141858,4.17186334736161,6.29847649644838,3.02699751316684,1.84138817993782,3.48108626184973,0.211255286311942,0.425208599930087,0.209658645508376,0.112328631146495,0.300353785683013,0,0.285012743741249,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0.393010762749165,0.411202997999018,0,0.32592226663359,0,0,0,0,0.443067789167242,0.270803863765016,0.128091319725675,0.650296737799391,0,0.276350017785848,0,0,0,0,0.226618685395132,0,0.34362744548263,0,0,0,0,0.301150238155546,0,0,0,0,0,0,0.289648807765598,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0.26591592103773,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112611480483322,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.985326475791887,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.502257091432126,0,0,0,0,0,0,0,0.112085143993527,0,0.215627574859517,0,0,0,0,0,0,0,0,0.828831026872071,0,0,0,0.207970861530807,0,0,0,0,0,0,0,0,0,0,0,0,0.215714200818617,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.182091168006717,0.131124414959424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.13929437434833,0,0,0.648473311192717,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.278406173895242,0,0,0,0,0,0,0,0,0,0,0.296964680832639,0,0,0,0,0.16480387422676,0,0.19924798825107,0.276283915531148,0,0.102268682502155,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.153900517007594,0.113942055847001,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189559738885464,0,0,0,0,0,0,0,0,0.173559738335131,0,0,0.17472666824203,0,0,0,0,0.193978032976839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.77380195455795,0,0,0,0,0,0,0,0.714695326373367,0,0,0,0,0,0,0.082092520749339,0,0,0,0,0,0,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.39997479170986,0.320075189082423,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161475645631851,0,0,0,0,0,0,0,0,0.225630985047772,0,0,0,0.163771917510097,0,0,0,0,0,0,0,0,0,0.127762427639595,0,0,0,0,0.0887023701626388,0.230467975111559,0,0.0679697329768317,0,0,0,0,0,0,0.913158720509496,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102662806856247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128915775947154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0717222053926763,0,0,0.106727345877715,0,0.179650404213174,0,0,0,0,0,0 | |||
|short_description=p3@GBP2 | |||
}} |
Latest revision as of 16:36, 19 September 2015
Short description: | p3@GBP2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_GBP2_5end |
Coexpression cluster: | C7_CD14_Eosinophils_Neutrophils_Smooth_Basophils_Macrophage_Mast |
Association with transcript: | 200bp_to_ENST00000370466_5end |
EntrezGene: | GBP2 |
HGNC: | 4183 |
UniProt: | P32456 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 4.22e-92 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.22e-92 | 42 |
defensive cell | 2.98e-80 | 48 |
phagocyte | 2.98e-80 | 48 |
monopoietic cell | 1.18e-63 | 59 |
monocyte | 1.18e-63 | 59 |
monoblast | 1.18e-63 | 59 |
promonocyte | 1.18e-63 | 59 |
macrophage dendritic cell progenitor | 1.64e-61 | 61 |
myeloid lineage restricted progenitor cell | 1.03e-56 | 66 |
granulocyte monocyte progenitor cell | 7.71e-56 | 67 |
myeloid leukocyte | 8.01e-52 | 72 |
myeloid cell | 9.25e-34 | 108 |
common myeloid progenitor | 9.25e-34 | 108 |
nongranular leukocyte | 1.51e-31 | 115 |
hematopoietic lineage restricted progenitor cell | 4.03e-30 | 120 |
leukocyte | 2.95e-26 | 136 |
hematopoietic oligopotent progenitor cell | 9.67e-22 | 161 |
hematopoietic multipotent progenitor cell | 9.67e-22 | 161 |
hematopoietic stem cell | 1.03e-20 | 168 |
hematopoietic cell | 1.64e-19 | 177 |
mesenchymal cell | 3.51e-08 | 354 |
connective tissue cell | 5.87e-08 | 361 |
motile cell | 3.60e-07 | 386 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 5.52e-49 | 76 |
bone element | 3.08e-45 | 82 |
hematopoietic system | 2.75e-41 | 98 |
blood island | 2.75e-41 | 98 |
skeletal element | 5.20e-41 | 90 |
immune system | 1.31e-39 | 93 |
hemolymphoid system | 3.11e-37 | 108 |
skeletal system | 1.15e-36 | 100 |
musculoskeletal system | 7.42e-21 | 167 |
lateral plate mesoderm | 1.71e-18 | 203 |
mesoderm | 8.25e-11 | 315 |
mesoderm-derived structure | 8.25e-11 | 315 |
presumptive mesoderm | 8.25e-11 | 315 |
connective tissue | 1.18e-07 | 371 |