FFCP PHASE1:Hg19::chr1:92415166..92415188,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=676 | |EntrezGene=676 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1105 | |HGNC=1105 | ||
|TSSclassifier=strong | |||
|UniProt=C9JQ27 | |UniProt=C9JQ27 | ||
|association_with_transcript=175bp_to_ENST00000457265_5end | |association_with_transcript=175bp_to_ENST00000457265_5end | ||
|cluster_id=chr1:92415166..92415188,+ | |||
|coexpression_cluster_id=C1 | |coexpression_cluster_id=C1 | ||
|description=CAGE_peak_3_at_BRDT_5end | |description=CAGE_peak_3_at_BRDT_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000039!3.54e-42!7;CL:0000586!3.54e-42!7;CL:1000415!3.93e-07!2 | |ontology_enrichment_celltype=CL:0000039!3.54e-42!7;CL:0000586!3.54e-42!7;CL:1000415!3.93e-07!2 | ||
|ontology_enrichment_celltype_v019=CL:0000039;2.02e-23;7!CL:0000586;2.02e-23;7 | |ontology_enrichment_celltype_v019=CL:0000039;2.02e-23;7!CL:0000586;2.02e-23;7 | ||
|ontology_enrichment_celltype_v019_2=CL:0000039,2.02e-23,7;CL:0000586,2.02e-23,7 | |||
|ontology_enrichment_development_v019=UBERON:0009117;2.53e-63;10!UBERON:0005564;2.53e-63;10!UBERON:0006603;8.50e-07;65 | |ontology_enrichment_development_v019=UBERON:0009117;2.53e-63;10!UBERON:0005564;2.53e-63;10!UBERON:0006603;8.50e-07;65 | ||
|ontology_enrichment_disease=DOID:3095!5.75e-19!22;DOID:2994!5.75e-19!22 | |ontology_enrichment_disease=DOID:3095!5.75e-19!22;DOID:2994!5.75e-19!22 | ||
|ontology_enrichment_disease_v019=DOID:3095;3.51e-08;22!DOID:2994;3.51e-08;22 | |ontology_enrichment_disease_v019=DOID:3095;3.51e-08;22!DOID:2994;3.51e-08;22 | ||
|ontology_enrichment_disease_v019_2=DOID:3095,3.51e-08,22;DOID:2994,3.51e-08,22 | |||
|ontology_enrichment_uberon=UBERON:0000473!3.40e-53!8;UBERON:0003135!1.18e-38!11;UBERON:0003101!8.37e-26!22;UBERON:0000079!8.37e-26!22;UBERON:0000991!3.83e-20!21;UBERON:0009196!3.83e-20!21;UBERON:0009117!3.83e-20!21;UBERON:0005564!3.83e-20!21;UBERON:0004176!3.25e-19!22;UBERON:0002323!4.46e-12!46;UBERON:0004458!2.67e-11!49;UBERON:0005156!2.97e-09!59;UBERON:0000990!2.97e-09!59;UBERON:0003886!1.20e-08!63;UBERON:0003133!1.29e-08!48;UBERON:0002553!1.03e-07!70 | |ontology_enrichment_uberon=UBERON:0000473!3.40e-53!8;UBERON:0003135!1.18e-38!11;UBERON:0003101!8.37e-26!22;UBERON:0000079!8.37e-26!22;UBERON:0000991!3.83e-20!21;UBERON:0009196!3.83e-20!21;UBERON:0009117!3.83e-20!21;UBERON:0005564!3.83e-20!21;UBERON:0004176!3.25e-19!22;UBERON:0002323!4.46e-12!46;UBERON:0004458!2.67e-11!49;UBERON:0005156!2.97e-09!59;UBERON:0000990!2.97e-09!59;UBERON:0003886!1.20e-08!63;UBERON:0003133!1.29e-08!48;UBERON:0002553!1.03e-07!70 | ||
|ontology_enrichment_uberon_v019=UBERON:0000473;7.08e-79;8!UBERON:0003135;1.15e-57;11!UBERON:0000991;1.13e-30;21!UBERON:0003101;2.54e-29;22!UBERON:0000079;2.54e-29;22!UBERON:0003133;8.15e-12;44!UBERON:0002323;8.31e-12;45!UBERON:0002553;1.82e-09;52!UBERON:0005156;4.96e-07;59!UBERON:0000990;4.96e-07;59 | |ontology_enrichment_uberon_v019=UBERON:0000473;7.08e-79;8!UBERON:0003135;1.15e-57;11!UBERON:0000991;1.13e-30;21!UBERON:0003101;2.54e-29;22!UBERON:0000079;2.54e-29;22!UBERON:0003133;8.15e-12;44!UBERON:0002323;8.31e-12;45!UBERON:0002553;1.82e-09;52!UBERON:0005156;4.96e-07;59!UBERON:0000990;4.96e-07;59 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,7.08e-79,8;UBERON:0003135,1.15e-57,11;UBERON:0000991,1.13e-30,21;UBERON:0009196,1.13e-30,21;UBERON:0009117,1.13e-30,21;UBERON:0005564,1.13e-30,21;UBERON:0004176,2.54e-29,22;UBERON:0003101,2.54e-29,22;UBERON:0000079,2.54e-29,22;UBERON:0002323,1.89e-14,46;UBERON:0003133,7.05e-14,48;UBERON:0004458,1.31e-13,49;UBERON:0003886,2.04e-12,54;UBERON:0005156,2.01e-11,59;UBERON:0000990,2.01e-11,59;UBERON:0002553,4.53e-11,61 | |||
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|short_description=p3@BRDT | |short_description=p3@BRDT | ||
}} | }} |
Latest revision as of 19:50, 19 September 2015
Short description: | p3@BRDT |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_BRDT_5end |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | 175bp_to_ENST00000457265_5end |
EntrezGene: | BRDT |
HGNC: | 1105 |
UniProt: | C9JQ27 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 2.02e-23 | 7 |
germ cell | 2.02e-23 | 7 |
Ontology term | p-value | n |
---|---|---|
testis | 7.08e-79 | 8 |
male reproductive organ | 1.15e-57 | 11 |
gonad | 1.13e-30 | 21 |
indifferent external genitalia | 1.13e-30 | 21 |
indifferent gonad | 1.13e-30 | 21 |
gonad primordium | 1.13e-30 | 21 |
external genitalia | 2.54e-29 | 22 |
male organism | 2.54e-29 | 22 |
male reproductive system | 2.54e-29 | 22 |
body cavity | 1.89e-14 | 46 |
reproductive organ | 7.05e-14 | 48 |
body cavity or lining | 1.31e-13 | 49 |
body cavity precursor | 2.04e-12 | 54 |
reproductive structure | 2.01e-11 | 59 |
reproductive system | 2.01e-11 | 59 |
anatomical cavity | 4.53e-11 | 61 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 3.51e-08 | 22 |
germ cell cancer | 3.51e-08 | 22 |