FFCP PHASE1:Hg19::chr12:6451220..6451231,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7132 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11916 | |||
|TSSclassifier=strong | |||
|UniProt=F5H6Z2 | |||
|association_with_transcript=-13bp_to_ENST00000536194_5end | |||
|cluster_id=chr12:6451220..6451231,- | |||
|description=CAGE_peak_4_at_TNFRSF1A_5end | |||
|id=chr12:6451220..6451231,- | |||
|ontology_enrichment_celltype=CL:0000115!7.07e-19!35;CL:0000222!1.81e-17!119;CL:0002078!2.16e-14!44;CL:0000213!2.86e-14!57;CL:0000215!2.86e-14!57;CL:0002139!3.80e-13!24;CL:0000071!6.90e-11!18;CL:0002546!6.90e-11!18;CL:0000220!1.93e-08!246;CL:0000183!5.28e-08!59;CL:0002321!6.29e-08!248;CL:0002371!7.92e-08!591;CL:0000055!1.42e-07!180;CL:0000144!4.16e-07!625 | |||
|ontology_enrichment_celltype_v019=CL:0000115;1.58e-16;36!CL:0002139;3.41e-13;24!CL:0000071;6.34e-11;18!CL:0002078;1.33e-09;45!CL:0000213;4.27e-09;58!CL:0000215;4.27e-09;58 | |||
|ontology_enrichment_celltype_v019_2=CL:0000115,1.46e-19,36;CL:0000222,2.70e-18,121;CL:0002078,5.74e-15,45;CL:0000213,8.16e-15,58;CL:0000215,8.16e-15,58;CL:0002139,3.75e-13,24;CL:0000071,6.84e-11,18;CL:0002546,6.84e-11,18;CL:0002321,2.37e-08,250 | |||
|ontology_enrichment_development_v019=CL:0002546;6.34e-11;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001009!6.69e-21!113;UBERON:0004535!7.32e-21!110;UBERON:0002049!1.07e-20!79;UBERON:0007798!1.07e-20!79;UBERON:0003914!1.48e-18!118;UBERON:0004872!2.59e-18!84;UBERON:0000055!5.05e-17!69;UBERON:0001981!1.63e-14!60;UBERON:0007500!1.63e-14!60;UBERON:0004537!1.63e-14!60;UBERON:0006965!1.63e-14!60;UBERON:0003081!2.36e-12!216;UBERON:0000926!3.64e-11!448;UBERON:0004120!3.64e-11!448;UBERON:0006603!3.64e-11!448;UBERON:0001986!6.90e-11!18;UBERON:0004638!6.90e-11!18;UBERON:0004852!6.90e-11!18;UBERON:0000487!2.94e-10!22;UBERON:0000490!7.68e-10!138;UBERON:0006914!1.91e-08!25;UBERON:0000468!2.34e-08!659;UBERON:0001637!3.30e-08!42;UBERON:0003509!3.30e-08!42;UBERON:0004572!3.30e-08!42;UBERON:0003103!1.48e-07!69;UBERON:0000467!1.50e-07!625;UBERON:0002100!1.61e-07!216;UBERON:0000480!2.62e-07!626;UBERON:0005256!3.14e-07!143;UBERON:0000477!4.82e-07!286 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;6.34e-11;18!UBERON:0001986;6.34e-11;18!UBERON:0004852;6.34e-11;18!UBERON:0000487;1.82e-10;22!UBERON:0006914;1.52e-08;25!UBERON:0000055;1.58e-08;65!UBERON:0002049;2.42e-08;75!UBERON:0007798;2.42e-08;75!UBERON:0003914;2.69e-08;74!UBERON:0007500;1.33e-07;56!UBERON:0001981;1.33e-07;56!UBERON:0004537;1.33e-07;56!UBERON:0000490;2.04e-07;33!UBERON:0004535;3.31e-07;109!UBERON:0001009;7.56e-07;112 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001009,1.14e-20,112;UBERON:0004535,1.24e-20,109;UBERON:0002049,1.78e-20,78;UBERON:0007798,1.78e-20,78;UBERON:0003914,3.52e-18,117;UBERON:0004872,4.02e-18,83;UBERON:0000055,8.98e-17,68;UBERON:0007500,2.68e-14,59;UBERON:0001981,2.68e-14,59;UBERON:0004537,2.68e-14,59;UBERON:0006965,2.68e-14,59;UBERON:0000926,7.08e-13,315;UBERON:0004120,7.08e-13,315;UBERON:0006603,7.08e-13,315;UBERON:0003081,2.04e-11,203;UBERON:0004638,6.84e-11,18;UBERON:0001986,6.84e-11,18;UBERON:0004852,6.84e-11,18;UBERON:0000487,2.91e-10,22;UBERON:0000490,6.66e-10,148;UBERON:0003104,1.77e-08,160;UBERON:0009142,1.77e-08,160;UBERON:0006914,2.10e-08,25;UBERON:0001637,3.28e-08,42;UBERON:0003509,3.28e-08,42;UBERON:0004572,3.28e-08,42;UBERON:0007503,4.55e-08,78;UBERON:0002100,7.33e-08,199;UBERON:0003103,2.73e-07,68;UBERON:0005256,6.37e-07,122 | |||
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| |||
|short_description=p4@TNFRSF1A | |||
}} |
Latest revision as of 20:17, 19 September 2015
Short description: | p4@TNFRSF1A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_TNFRSF1A_5end |
Coexpression cluster: | NA |
Association with transcript: | -13bp_to_ENST00000536194_5end |
EntrezGene: | TNFRSF1A |
HGNC: | 11916 |
UniProt: | F5H6Z2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell | 1.46e-19 | 36 |
mesodermal cell | 2.70e-18 | 121 |
meso-epithelial cell | 5.74e-15 | 45 |
lining cell | 8.16e-15 | 58 |
barrier cell | 8.16e-15 | 58 |
endothelial cell of vascular tree | 3.75e-13 | 24 |
blood vessel endothelial cell | 6.84e-11 | 18 |
embryonic blood vessel endothelial progenitor cell | 6.84e-11 | 18 |
embryonic cell | 2.37e-08 | 250 |
Ontology term | p-value | n |
---|---|---|
circulatory system | 1.14e-20 | 112 |
cardiovascular system | 1.24e-20 | 109 |
vasculature | 1.78e-20 | 78 |
vascular system | 1.78e-20 | 78 |
epithelial tube | 3.52e-18 | 117 |
splanchnic layer of lateral plate mesoderm | 4.02e-18 | 83 |
vessel | 8.98e-17 | 68 |
epithelial tube open at both ends | 2.68e-14 | 59 |
blood vessel | 2.68e-14 | 59 |
blood vasculature | 2.68e-14 | 59 |
vascular cord | 2.68e-14 | 59 |
mesoderm | 7.08e-13 | 315 |
mesoderm-derived structure | 7.08e-13 | 315 |
presumptive mesoderm | 7.08e-13 | 315 |
lateral plate mesoderm | 2.04e-11 | 203 |
blood vessel endothelium | 6.84e-11 | 18 |
endothelium | 6.84e-11 | 18 |
cardiovascular system endothelium | 6.84e-11 | 18 |
simple squamous epithelium | 2.91e-10 | 22 |
unilaminar epithelium | 6.66e-10 | 148 |
mesenchyme | 1.77e-08 | 160 |
entire embryonic mesenchyme | 1.77e-08 | 160 |
squamous epithelium | 2.10e-08 | 25 |
artery | 3.28e-08 | 42 |
arterial blood vessel | 3.28e-08 | 42 |
arterial system | 3.28e-08 | 42 |
epithelial vesicle | 4.55e-08 | 78 |
trunk | 7.33e-08 | 199 |
compound organ | 2.73e-07 | 68 |
trunk mesenchyme | 6.37e-07 | 122 |