FFCP PHASE1:Hg19::chr19:54876734..54876745,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3903 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6477 | |||
|TSSclassifier=strong | |||
|UniProt=F2Z2I1,Q6GTX8 | |||
|association_with_transcript=-13bp_to_ENST00000423853,NM_002287,NM_021706,uc002qfk.1,uc002qfl.1,uc002qfm.1,uc002qfn.1_5end | |||
|cluster_id=chr19:54876734..54876745,- | |||
|coexpression_cluster_id=C0 | |||
|description=CAGE_peak_7_at_LAIR1_5end | |||
|id=chr19:54876734..54876745,- | |||
|ontology_enrichment_celltype=CL:0000763!7.69e-66!112;CL:0000049!7.69e-66!112;CL:0000839!1.84e-64!70;CL:0002194!7.55e-62!63;CL:0000576!7.55e-62!63;CL:0000040!7.55e-62!63;CL:0000559!7.55e-62!63;CL:0002009!1.66e-59!65;CL:0000766!2.94e-58!76;CL:0000557!4.35e-58!71;CL:0002057!4.07e-54!42;CL:0000860!1.02e-49!45;CL:0000037!8.63e-45!172;CL:0000566!8.63e-45!172;CL:0002032!7.97e-43!165;CL:0000837!7.97e-43!165;CL:0000988!3.30e-41!182;CL:0002031!5.92e-34!124;CL:0002087!4.51e-33!119;CL:0000738!4.99e-31!140;CL:0000134!2.05e-14!358;CL:0002320!9.30e-14!365;CL:0000219!1.84e-11!390;CL:0000034!6.67e-09!444;CL:0000048!9.03e-09!430;CL:0000723!2.14e-08!436;CL:0002619!9.63e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.27e-101;33!CL:0002057;1.27e-101;33!CL:0000473;4.94e-99;39!CL:0000234;4.94e-99;39!CL:0000576;1.55e-61;48!CL:0000766;1.31e-39;69!CL:0000763;2.55e-24;100!CL:0000235;8.36e-21;6!CL:0002087;2.44e-15;104!CL:0000738;4.09e-12;136!CL:0000988;3.19e-07;177 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,4.17e-112,48;CL:0000234,4.17e-112,48;CL:0002194,1.26e-105,59;CL:0000576,1.26e-105,59;CL:0000040,1.26e-105,59;CL:0000559,1.26e-105,59;CL:0002009,5.22e-102,61;CL:0000839,6.62e-94,66;CL:0000557,1.99e-92,67;CL:0000860,2.88e-92,42;CL:0002057,2.88e-92,42;CL:0000766,1.21e-85,72;CL:0000763,1.27e-65,108;CL:0000049,1.27e-65,108;CL:0002087,2.00e-51,115;CL:0002031,5.05e-49,120;CL:0000738,1.65e-42,136;CL:0002032,6.21e-42,161;CL:0000837,6.21e-42,161;CL:0000037,6.52e-40,168;CL:0000988,1.51e-37,177;CL:0000235,6.10e-21,6;CL:0000134,2.53e-15,354;CL:0002320,6.88e-15,361;CL:0000219,2.35e-13,386;CL:0000048,1.77e-11,427;CL:0000723,3.22e-11,433;CL:0000034,6.97e-11,441 | |||
|ontology_enrichment_development_v019=CL:0002057;8.09e-68;42!CL:0000049;1.41e-19;108 | |||
|ontology_enrichment_disease=DOID:8692!5.27e-14!31;DOID:1240!3.34e-10!39;DOID:2531!9.84e-08!51;DOID:0060083!9.84e-08!51 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!2.58e-54!80;UBERON:0001474!1.89e-49!86;UBERON:0002390!1.74e-48!102;UBERON:0003061!1.74e-48!102;UBERON:0002193!1.14e-42!112;UBERON:0004765!8.11e-40!101;UBERON:0001434!8.11e-40!101;UBERON:0002405!1.27e-37!115;UBERON:0003081!1.69e-18!216;UBERON:0002204!3.58e-18!167;UBERON:0002384!7.27e-13!375 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,7.47e-81,76;UBERON:0001474,1.57e-74,82;UBERON:0004765,2.16e-67,90;UBERON:0002405,4.98e-65,93;UBERON:0002390,2.08e-61,98;UBERON:0003061,2.08e-61,98;UBERON:0001434,4.64e-60,100;UBERON:0002193,3.68e-55,108;UBERON:0002204,2.07e-33,167;UBERON:0003081,2.65e-26,203;UBERON:0000926,1.66e-14,315;UBERON:0004120,1.66e-14,315;UBERON:0006603,1.66e-14,315;UBERON:0002384,2.70e-14,371 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0787107813136792,0,0,0.464448369948228,0,0,0,0,0,0.293600439334847,0,2.60707781711184,0.217010870715852,1.11957737119962,0.647787332037959,0.515151135268373,1.16318591023652,0.377875943688809,1.94067248950253,7.90258725479328,7.40102198439286,4.95530193432166,2.01384674625505,3.33008918487831,3.07426898855161,10.3423704220986,2.5819387343353,1.35426486594342,2.82363509313907,3.27487380069415,3.14612878223118,10.4068523406107,8.34415470397843,4.47535988059329,0,1.19678194572979,0.426224750532694,23.5069483289153,10.2129340444405,1.86846674698672,1.25624332628372,4.17186334736161,1.73751075764093,8.47559303686716,5.52416453981347,4.43047342417238,0,0,0.419317291016752,0,0.150176892841506,0.16072558669708,0,0,0.365328307529268,0,0,0,0,0,0,0,0,0,0.587237189370939,0,0,0.560508562981536,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134831308160164,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.96973604869918,2.80805118167085,1.93220510975347,0,0,0,0,0,0,0,0.088048434013226,0,0,0.37872730027914,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2162378064119,2.00902836572851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414415513436035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.431428401637234,0.320182673410333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.438519753291869,0.261435451024901,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0.238231775457789,0,0,0,0,0,0,0,0,0,0,0,0.199579371432817,1.7235483311913,0.635020748171649,2.59697552219644,0.561594356226918,0.228234679033192,0.313359791546046,0,0,0.963528450622197,0.80719882876419,0.851692475380653,0.343505344755765,2.15068535015921,0.894704431569664,1.00109485027145,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.281338832821026,0,0,0,0,0,0,0,0,0,0,0,1.53471711068062,0.197286811273867,0,0,0,0.185536196323703,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113942055847001,0,0,0,0.31900115973192,0.0915975934018623,0,0,0.156980256395025,0,0,0,0,0,0.158936578980379,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.379119477770928,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0.0969890164884194,0,0.225980740780532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,0.795229689809303,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.662091970365432,0,0,0,0,0,0,0,0,0,0,0.258565912723101,0,0,0,0.427149650270779,0,0,0,0,0,0,0,0.2506898940227,0,0,0,0,0.122026264901963,0,0,0.332787154610557,0.124192805882767,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.172214979660816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0,0,0,0,0,0,0,0,0,0,0,0.177404740325278,0,0,0.0679697329768317,0,0,0,0,0,0,0,0,0,0.142953088353313,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.322289439867886,0,0,0,0,0,0,0.286679166302903,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620747142958579,0,0.0636471582781649,0,0,0,0,0.143444410785353,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p7@LAIR1 | |||
}} |
Latest revision as of 22:12, 19 September 2015
Short description: | p7@LAIR1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_LAIR1_5end |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | -13bp_to_ENST00000423853, NM_002287, NM_021706, uc002qfk.1, uc002qfl.1, uc002qfm.1, uc002qfn.1_5end |
EntrezGene: | LAIR1 |
HGNC: | 6477 |
UniProt: | F2Z2I1Q6GTX8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 4.17e-112 | 48 |
phagocyte | 4.17e-112 | 48 |
monopoietic cell | 1.26e-105 | 59 |
monocyte | 1.26e-105 | 59 |
monoblast | 1.26e-105 | 59 |
promonocyte | 1.26e-105 | 59 |
macrophage dendritic cell progenitor | 5.22e-102 | 61 |
myeloid lineage restricted progenitor cell | 6.62e-94 | 66 |
granulocyte monocyte progenitor cell | 1.99e-92 | 67 |
classical monocyte | 2.88e-92 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.88e-92 | 42 |
myeloid leukocyte | 1.21e-85 | 72 |
myeloid cell | 1.27e-65 | 108 |
common myeloid progenitor | 1.27e-65 | 108 |
nongranular leukocyte | 2.00e-51 | 115 |
hematopoietic lineage restricted progenitor cell | 5.05e-49 | 120 |
leukocyte | 1.65e-42 | 136 |
hematopoietic oligopotent progenitor cell | 6.21e-42 | 161 |
hematopoietic multipotent progenitor cell | 6.21e-42 | 161 |
hematopoietic stem cell | 6.52e-40 | 168 |
hematopoietic cell | 1.51e-37 | 177 |
macrophage | 6.10e-21 | 6 |
mesenchymal cell | 2.53e-15 | 354 |
connective tissue cell | 6.88e-15 | 361 |
motile cell | 2.35e-13 | 386 |
multi fate stem cell | 1.77e-11 | 427 |
somatic stem cell | 3.22e-11 | 433 |
stem cell | 6.97e-11 | 441 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 7.47e-81 | 76 |
bone element | 1.57e-74 | 82 |
skeletal element | 2.16e-67 | 90 |
immune system | 4.98e-65 | 93 |
hematopoietic system | 2.08e-61 | 98 |
blood island | 2.08e-61 | 98 |
skeletal system | 4.64e-60 | 100 |
hemolymphoid system | 3.68e-55 | 108 |
musculoskeletal system | 2.07e-33 | 167 |
lateral plate mesoderm | 2.65e-26 | 203 |
mesoderm | 1.66e-14 | 315 |
mesoderm-derived structure | 1.66e-14 | 315 |
presumptive mesoderm | 1.66e-14 | 315 |
connective tissue | 2.70e-14 | 371 |