FFCP PHASE1:Hg19::chr9:114937563..114937655,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr9:114937563..114937655,- to FFCP PHASE1:Hg19::chr9:114937563..114937655,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=64420 | |EntrezGene=64420 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25413 | |HGNC=25413 | ||
|TSSclassifier=strong | |||
|UniProt=F8WAQ1,Q6UWL2 | |UniProt=F8WAQ1,Q6UWL2 | ||
|association_with_transcript=-7bp_to_ENST00000374263,NM_022486,uc004bfu.2,uc010mui.2,uc010muj.2_5end | |||
|cluster_id=chr9:114937563..114937655,- | |||
|description=CAGE_peak_1_at_SUSD1_5end | |||
|id=chr9:114937563..114937655,- | |||
|ontology_enrichment_celltype=CL:0000766!2.65e-31!76;CL:0000763!2.25e-30!112;CL:0000049!2.25e-30!112;CL:0000557!1.44e-27!71;CL:0002194!2.42e-27!63;CL:0000576!2.42e-27!63;CL:0000040!2.42e-27!63;CL:0000559!2.42e-27!63;CL:0000839!2.83e-27!70;CL:0002009!4.80e-25!65;CL:0002057!5.19e-25!42;CL:0000037!7.64e-23!172;CL:0000566!7.64e-23!172;CL:0000860!3.74e-21!45;CL:0000988!7.38e-21!182;CL:0002032!1.68e-20!165;CL:0000837!1.68e-20!165;CL:0000738!5.91e-18!140;CL:0002087!7.20e-16!119;CL:0002031!1.84e-14!124;CL:0000048!3.35e-07!430;CL:0000134!4.27e-07!358;CL:0002393!5.40e-07!9;CL:0002397!5.40e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0000860;6.90e-18;33!CL:0002057;6.90e-18;33!CL:0000576;1.34e-17;48!CL:0000473;2.77e-17;39!CL:0000234;2.77e-17;39!CL:0000766;2.71e-14;69!CL:0000763;3.71e-11;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,3.44e-34,72;CL:0000763,1.95e-32,108;CL:0000049,1.95e-32,108;CL:0002194,2.26e-30,59;CL:0000576,2.26e-30,59;CL:0000040,2.26e-30,59;CL:0000559,2.26e-30,59;CL:0000557,2.50e-30,67;CL:0000839,4.80e-30,66;CL:0002009,8.50e-28,61;CL:0000473,1.67e-27,48;CL:0000234,1.67e-27,48;CL:0000860,5.06e-25,42;CL:0002057,5.06e-25,42;CL:0000037,4.41e-24,168;CL:0002032,1.11e-21,161;CL:0000837,1.11e-21,161;CL:0000988,1.29e-21,177;CL:0000738,3.67e-19,136;CL:0002087,4.16e-17,115;CL:0002031,1.38e-15,120;CL:0000048,1.16e-07,427;CL:0000134,1.43e-07,354;CL:0002393,5.36e-07,9;CL:0002397,5.36e-07,9;CL:0000723,7.64e-07,433;CL:0002320,9.44e-07,361 | |||
|ontology_enrichment_development_v019=CL:0002057;2.01e-18;42!CL:0000049;2.02e-10;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!1.33e-27!112;UBERON:0002390!7.77e-27!102;UBERON:0003061!7.77e-27!102;UBERON:0002371!2.78e-23!80;UBERON:0002405!2.66e-22!115;UBERON:0001474!7.08e-20!86;UBERON:0003081!7.65e-19!216;UBERON:0004765!8.29e-17!101;UBERON:0001434!8.29e-17!101;UBERON:0002204!2.62e-10!167 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,1.47e-29,108;UBERON:0002390,6.74e-29,98;UBERON:0003061,6.74e-29,98;UBERON:0002405,2.97e-26,93;UBERON:0002371,1.78e-25,76;UBERON:0001474,9.38e-22,82;UBERON:0004765,1.45e-18,90;UBERON:0003081,2.89e-18,203;UBERON:0001434,3.10e-17,100;UBERON:0002204,1.75e-10,167;UBERON:0000926,1.27e-07,315;UBERON:0004120,1.27e-07,315;UBERON:0006603,1.27e-07,315 | |||
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| ||
|short_description=p1@SUSD1 | |||
}} | }} |
Latest revision as of 05:29, 20 September 2015
Short description: | p1@SUSD1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SUSD1_5end |
Coexpression cluster: | NA |
Association with transcript: | -7bp_to_ENST00000374263, NM_022486, uc004bfu.2, uc010mui.2, uc010muj.2_5end |
EntrezGene: | SUSD1 |
HGNC: | 25413 |
UniProt: | F8WAQ1Q6UWL2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 3.44e-34 | 72 |
myeloid cell | 1.95e-32 | 108 |
common myeloid progenitor | 1.95e-32 | 108 |
monopoietic cell | 2.26e-30 | 59 |
monocyte | 2.26e-30 | 59 |
monoblast | 2.26e-30 | 59 |
promonocyte | 2.26e-30 | 59 |
granulocyte monocyte progenitor cell | 2.50e-30 | 67 |
myeloid lineage restricted progenitor cell | 4.80e-30 | 66 |
macrophage dendritic cell progenitor | 8.50e-28 | 61 |
defensive cell | 1.67e-27 | 48 |
phagocyte | 1.67e-27 | 48 |
classical monocyte | 5.06e-25 | 42 |
CD14-positive, CD16-negative classical monocyte | 5.06e-25 | 42 |
hematopoietic stem cell | 4.41e-24 | 168 |
hematopoietic oligopotent progenitor cell | 1.11e-21 | 161 |
hematopoietic multipotent progenitor cell | 1.11e-21 | 161 |
hematopoietic cell | 1.29e-21 | 177 |
leukocyte | 3.67e-19 | 136 |
nongranular leukocyte | 4.16e-17 | 115 |
hematopoietic lineage restricted progenitor cell | 1.38e-15 | 120 |
multi fate stem cell | 1.16e-07 | 427 |
mesenchymal cell | 1.43e-07 | 354 |
intermediate monocyte | 5.36e-07 | 9 |
CD14-positive, CD16-positive monocyte | 5.36e-07 | 9 |
somatic stem cell | 7.64e-07 | 433 |
connective tissue cell | 9.44e-07 | 361 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 1.47e-29 | 108 |
hematopoietic system | 6.74e-29 | 98 |
blood island | 6.74e-29 | 98 |
immune system | 2.97e-26 | 93 |
bone marrow | 1.78e-25 | 76 |
bone element | 9.38e-22 | 82 |
skeletal element | 1.45e-18 | 90 |
lateral plate mesoderm | 2.89e-18 | 203 |
skeletal system | 3.10e-17 | 100 |
musculoskeletal system | 1.75e-10 | 167 |
mesoderm | 1.27e-07 | 315 |
mesoderm-derived structure | 1.27e-07 | 315 |
presumptive mesoderm | 1.27e-07 | 315 |