FFCP PHASE1:Hg19::chr16:11343475..11343490,+: Difference between revisions
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|id=chr16:11343475..11343490,+
|short_description=p3@RMI2
|description=CAGE_peak_3_at_RMI2_5end
|association_with_transcript=-15bp_to_uc002daq.1_5end
|EntrezGene=1...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=116028 | |EntrezGene=116028 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28349 | |HGNC=28349 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-15bp_to_uc002daq.1_5end | |||
|cluster_id=chr16:11343475..11343490,+ | |||
|coexpression_cluster_id=C1 | |||
|description=CAGE_peak_3_at_RMI2_5end | |||
|id=chr16:11343475..11343490,+ | |||
|ontology_enrichment_celltype=CL:0000313!1.88e-21!1;CL:0000159!2.02e-11!2;CL:0002602!4.09e-11!2;CL:0002564!8.29e-08!3 | |||
|ontology_enrichment_celltype_v019=CL:0000313;2.42e-50;1!CL:0000159;5.56e-26;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000313,2.42e-50,1;CL:0000159,5.56e-26,2 | |||
|ontology_enrichment_development_v019=UBERON:0009117;4.50e-45;10!UBERON:0005564;4.50e-45;10 | |||
|ontology_enrichment_disease=DOID:2152!1.88e-21!1 | |||
|ontology_enrichment_disease_v019=DOID:2152;2.42e-50;1 | |||
|ontology_enrichment_disease_v019_2=DOID:2152,2.42e-50,1 | |||
|ontology_enrichment_uberon=UBERON:0004911!1.88e-21!1;UBERON:0002372!4.22e-21!1;UBERON:0001961!4.22e-21!1;UBERON:0001744!4.22e-21!1;UBERON:0001735!4.22e-21!1;UBERON:0002370!1.05e-20!4;UBERON:0005058!1.05e-20!4;UBERON:0009113!1.05e-20!4;UBERON:0003295!1.05e-20!4;UBERON:0005562!1.05e-20!4;UBERON:0001042!1.94e-18!10;UBERON:0009145!1.94e-18!10;UBERON:0006562!7.90e-17!11;UBERON:0003351!3.71e-14!6;UBERON:0004177!2.82e-12!7;UBERON:0004909!2.02e-11!2;UBERON:0009568!4.09e-11!2;UBERON:0002216!4.09e-11!2;UBERON:0002209!4.09e-11!2;UBERON:0002213!4.09e-11!2;UBERON:0004267!4.09e-11!2;UBERON:0006444!4.09e-11!2;UBERON:0001995!4.09e-11!2;UBERON:0004715!4.09e-11!2;UBERON:0001468!4.09e-11!2;UBERON:0001130!4.09e-11!2;UBERON:0001066!4.09e-11!2;UBERON:0000473!4.66e-11!8;UBERON:0001557!5.03e-10!19;UBERON:0000991!2.75e-09!21;UBERON:0009196!2.75e-09!21;UBERON:0009117!2.75e-09!21;UBERON:0005564!2.75e-09!21;UBERON:0004176!6.84e-09!22;UBERON:0000974!7.07e-09!10;UBERON:0003408!7.07e-09!10;UBERON:0003135!2.72e-08!11;UBERON:0009722!3.76e-08!11;UBERON:0007690!3.76e-08!11;UBERON:0002418!7.76e-08!3;UBERON:0004755!7.76e-08!3;UBERON:0002242!8.29e-08!3;UBERON:0003068!8.29e-08!3;UBERON:0002328!8.29e-08!3;UBERON:0004880!8.29e-08!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0004911;2.42e-50;1!UBERON:0004909;5.56e-26;2!UBERON:0000473;1.04e-25;8!UBERON:0000991;4.59e-22;21!UBERON:0003135;4.91e-19;11!UBERON:0003101;4.43e-10;22!UBERON:0000079;4.43e-10;22!UBERON:0003133;1.23e-08;44!UBERON:0002323;1.24e-07;45!UBERON:0002553;5.12e-07;52 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004911,2.42e-50,1;UBERON:0004909,5.56e-26,2;UBERON:0000473,9.81e-26,8;UBERON:0000991,4.43e-22,21;UBERON:0009196,4.43e-22,21;UBERON:0009117,4.43e-22,21;UBERON:0005564,4.43e-22,21;UBERON:0004176,3.99e-21,22;UBERON:0003135,4.69e-19,11;UBERON:0002323,1.31e-10,46;UBERON:0003133,3.32e-10,48;UBERON:0003101,4.33e-10,22;UBERON:0000079,4.33e-10,22;UBERON:0004458,5.14e-10,49;UBERON:0003886,3.61e-09,54;UBERON:0005156,1.83e-08,59;UBERON:0000990,1.83e-08,59;UBERON:0002553,3.25e-08,61 | |||
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|short_description=p3@RMI2 | |||
}} | }} |
Latest revision as of 05:40, 20 September 2015
Short description: | p3@RMI2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_RMI2_5end |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | -15bp_to_uc002daq.1_5end |
EntrezGene: | RMI2 |
HGNC: | 28349 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
serous secreting cell | 2.42e-50 | 1 |
seromucus secreting cell | 5.56e-26 | 2 |
Ontology term | p-value | n |
---|---|---|
epithelium of female gonad | 2.42e-50 | 1 |
epithelium of gonad | 5.56e-26 | 2 |
testis | 9.81e-26 | 8 |
gonad | 4.43e-22 | 21 |
indifferent external genitalia | 4.43e-22 | 21 |
indifferent gonad | 4.43e-22 | 21 |
gonad primordium | 4.43e-22 | 21 |
external genitalia | 3.99e-21 | 22 |
male reproductive organ | 4.69e-19 | 11 |
body cavity | 1.31e-10 | 46 |
reproductive organ | 3.32e-10 | 48 |
male organism | 4.33e-10 | 22 |
male reproductive system | 4.33e-10 | 22 |
body cavity or lining | 5.14e-10 | 49 |
body cavity precursor | 3.61e-09 | 54 |
reproductive structure | 1.83e-08 | 59 |
reproductive system | 1.83e-08 | 59 |
anatomical cavity | 3.25e-08 | 61 |
Ontology term | p-value | n |
---|---|---|
ovary epithelial cancer | 2.42e-50 | 1 |