FFCP PHASE1:Hg19::chr3:128445056..128445073,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr3:128445056..128445073,+
|short_description=p3@RAB7A
|description=CAGE_peak_3_at_RAB7A_5end
|association_with_transcript=20bp_to_ENST00000482525_5end
|Entre...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=7879 | |EntrezGene=7879 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9788 | |HGNC=9788 | ||
|TSSclassifier=strong | |||
|UniProt=C9J8S3 | |UniProt=C9J8S3 | ||
|association_with_transcript=20bp_to_ENST00000482525_5end | |||
|cluster_id=chr3:128445056..128445073,+ | |||
|coexpression_cluster_id=C0 | |||
|description=CAGE_peak_3_at_RAB7A_5end | |||
|id=chr3:128445056..128445073,+ | |||
|ontology_enrichment_celltype=CL:0000766!2.32e-27!76;CL:0000557!1.37e-25!71;CL:0002009!2.93e-23!65;CL:0000839!3.22e-22!70;CL:0002194!4.07e-22!63;CL:0000576!4.07e-22!63;CL:0000040!4.07e-22!63;CL:0000559!4.07e-22!63;CL:0000063!5.84e-21!578;CL:0000012!4.58e-20!682;CL:0002057!9.88e-20!42;CL:0000548!2.81e-19!679;CL:0000004!2.81e-19!679;CL:0000255!2.81e-19!679;CL:0000860!9.25e-19!45;CL:0000763!4.06e-18!112;CL:0000049!4.06e-18!112;CL:0000144!9.93e-17!625;CL:0002371!9.28e-13!591;CL:0000003!4.65e-12!722;CL:0000034!4.90e-10!444;CL:0000738!7.15e-10!140;CL:0000723!4.02e-09!436;CL:0000048!6.40e-09!430;CL:0002031!1.42e-08!124;CL:0000134!3.61e-08!358;CL:0002032!5.51e-08!165;CL:0000837!5.51e-08!165;CL:0000037!1.68e-07!172;CL:0000566!1.68e-07!172;CL:0002087!2.00e-07!119;CL:0000988!4.50e-07!182;CL:0000219!5.98e-07!390;CL:0002320!9.34e-07!365 | |||
|ontology_enrichment_celltype_v019=CL:0000860;7.46e-17;33!CL:0002057;7.46e-17;33!CL:0000473;2.25e-16;39!CL:0000234;2.25e-16;39!CL:0000576;2.49e-13;48!CL:0000766;2.25e-12;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,6.58e-29,72;CL:0000557,3.80e-27,67;CL:0002009,8.25e-25,61;CL:0002194,1.22e-23,59;CL:0000576,1.22e-23,59;CL:0000040,1.22e-23,59;CL:0000559,1.22e-23,59;CL:0000839,1.36e-23,66;CL:0000473,1.84e-22,48;CL:0000234,1.84e-22,48;CL:0000860,9.83e-20,42;CL:0002057,9.83e-20,42;CL:0000763,8.08e-19,108;CL:0000049,8.08e-19,108;CL:0000738,3.14e-10,136;CL:0000034,7.38e-10,441;CL:0000723,5.89e-09,433;CL:0002031,6.57e-09,120;CL:0000048,9.30e-09,427;CL:0002032,3.15e-08,161;CL:0000837,3.15e-08,161;CL:0000134,5.26e-08,354;CL:0000037,9.82e-08,168;CL:0002087,9.97e-08,115;CL:0000988,4.19e-07,177;CL:0000219,8.74e-07,386 | |||
|ontology_enrichment_development_v019=CL:0002057;5.67e-15;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!3.30e-23!80;UBERON:0001474!6.69e-22!86;UBERON:0004765!1.27e-17!101;UBERON:0001434!1.27e-17!101;UBERON:0002193!3.43e-16!112;UBERON:0002405!4.55e-16!115;UBERON:0002390!1.25e-15!102;UBERON:0003061!1.25e-15!102;UBERON:0002204!3.60e-12!167;UBERON:0003081!5.32e-11!216;UBERON:0000926!5.24e-07!448;UBERON:0004120!5.24e-07!448;UBERON:0006603!5.24e-07!448 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.85e-24,76;UBERON:0001474,5.32e-23,82;UBERON:0002405,1.58e-21,93;UBERON:0004765,1.83e-20,90;UBERON:0002193,7.88e-17,108;UBERON:0001434,1.57e-16,100;UBERON:0002390,2.63e-16,98;UBERON:0003061,2.63e-16,98;UBERON:0003081,1.37e-12,203;UBERON:0002204,2.04e-11,167;UBERON:0000926,6.12e-11,315;UBERON:0004120,6.12e-11,315;UBERON:0006603,6.12e-11,315 | |||
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| ||
|short_description=p3@RAB7A | |||
}} | }} |
Latest revision as of 07:21, 20 September 2015
Short description: | p3@RAB7A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_RAB7A_5end |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | 20bp_to_ENST00000482525_5end |
EntrezGene: | RAB7A |
HGNC: | 9788 |
UniProt: | C9J8S3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 6.58e-29 | 72 |
granulocyte monocyte progenitor cell | 3.80e-27 | 67 |
macrophage dendritic cell progenitor | 8.25e-25 | 61 |
monopoietic cell | 1.22e-23 | 59 |
monocyte | 1.22e-23 | 59 |
monoblast | 1.22e-23 | 59 |
promonocyte | 1.22e-23 | 59 |
myeloid lineage restricted progenitor cell | 1.36e-23 | 66 |
defensive cell | 1.84e-22 | 48 |
phagocyte | 1.84e-22 | 48 |
classical monocyte | 9.83e-20 | 42 |
CD14-positive, CD16-negative classical monocyte | 9.83e-20 | 42 |
myeloid cell | 8.08e-19 | 108 |
common myeloid progenitor | 8.08e-19 | 108 |
leukocyte | 3.14e-10 | 136 |
stem cell | 7.38e-10 | 441 |
somatic stem cell | 5.89e-09 | 433 |
hematopoietic lineage restricted progenitor cell | 6.57e-09 | 120 |
multi fate stem cell | 9.30e-09 | 427 |
hematopoietic oligopotent progenitor cell | 3.15e-08 | 161 |
hematopoietic multipotent progenitor cell | 3.15e-08 | 161 |
mesenchymal cell | 5.26e-08 | 354 |
hematopoietic stem cell | 9.82e-08 | 168 |
nongranular leukocyte | 9.97e-08 | 115 |
hematopoietic cell | 4.19e-07 | 177 |
motile cell | 8.74e-07 | 386 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.85e-24 | 76 |
bone element | 5.32e-23 | 82 |
immune system | 1.58e-21 | 93 |
skeletal element | 1.83e-20 | 90 |
hemolymphoid system | 7.88e-17 | 108 |
skeletal system | 1.57e-16 | 100 |
hematopoietic system | 2.63e-16 | 98 |
blood island | 2.63e-16 | 98 |
lateral plate mesoderm | 1.37e-12 | 203 |
musculoskeletal system | 2.04e-11 | 167 |
mesoderm | 6.12e-11 | 315 |
mesoderm-derived structure | 6.12e-11 | 315 |
presumptive mesoderm | 6.12e-11 | 315 |