FFCP PHASE1:Hg19::chr14:55603238..55603250,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr14:55603238..55603250,+
|short_description=p15@LGALS3
|description=CAGE_peak_15_at_LGALS3_5end
|association_with_transcript=-450bp_to_NR_003225_5end
|Entrez...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3958 | |EntrezGene=3958 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=6563 | |HGNC=6563 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-450bp_to_NR_003225_5end | |||
|cluster_id=chr14:55603238..55603250,+ | |||
|coexpression_cluster_id=C244 | |||
|description=CAGE_peak_15_at_LGALS3_5end | |||
|id=chr14:55603238..55603250,+ | |||
|ontology_enrichment_celltype=CL:0000557!7.82e-37!71;CL:0000839!1.02e-35!70;CL:0000766!2.52e-33!76;CL:0002009!1.56e-32!65;CL:0002057!2.94e-31!42;CL:0002194!1.43e-30!63;CL:0000576!1.43e-30!63;CL:0000040!1.43e-30!63;CL:0000559!1.43e-30!63;CL:0000860!7.59e-30!45;CL:0000763!3.30e-21!112;CL:0000049!3.30e-21!112;CL:0002031!1.15e-18!124;CL:0000738!6.60e-18!140;CL:0002087!3.20e-15!119;CL:0000037!1.37e-12!172;CL:0000566!1.37e-12!172;CL:0000988!3.16e-12!182;CL:0002032!6.63e-12!165;CL:0000837!6.63e-12!165;CL:0000219!2.64e-08!390;CL:0000840!1.22e-07!5;CL:0001029!1.22e-07!5;CL:0000134!3.01e-07!358;CL:0002320!4.32e-07!365;CL:0002274!6.51e-07!5;CL:0000457!6.51e-07!5;CL:0002191!6.51e-07!5;CL:0000097!6.51e-07!5;CL:0000831!6.51e-07!5;CL:0002028!6.51e-07!5 | |||
|ontology_enrichment_celltype_v019=CL:0000860;8.40e-126;33!CL:0002057;8.40e-126;33!CL:0000473;1.94e-91;39!CL:0000234;1.94e-91;39!CL:0000576;1.09e-63;48!CL:0000766;1.14e-37;69!CL:0000763;1.58e-18;100!CL:0002087;1.48e-16;104!CL:0000738;1.98e-11;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,5.48e-124,42;CL:0002057,5.48e-124,42;CL:0000473,2.32e-116,48;CL:0000234,2.32e-116,48;CL:0002194,3.10e-92,59;CL:0000576,3.10e-92,59;CL:0000040,3.10e-92,59;CL:0000559,3.10e-92,59;CL:0002009,4.04e-89,61;CL:0000839,3.79e-82,66;CL:0000557,7.09e-81,67;CL:0000766,4.86e-75,72;CL:0000763,8.40e-49,108;CL:0000049,8.40e-49,108;CL:0002087,1.38e-45,115;CL:0002031,1.61e-43,120;CL:0000738,6.54e-38,136;CL:0002032,2.33e-31,161;CL:0000837,2.33e-31,161;CL:0000037,7.17e-30,168;CL:0000988,3.96e-28,177;CL:0000134,9.75e-12,354;CL:0002320,2.04e-11,361;CL:0000219,2.78e-10,386;CL:0000048,6.83e-09,427;CL:0000723,1.06e-08,433;CL:0000034,1.88e-08,441 | |||
|ontology_enrichment_development_v019=CL:0002057;7.17e-91;42!CL:0000049;1.27e-15;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!9.72e-34!80;UBERON:0002390!6.64e-31!102;UBERON:0003061!6.64e-31!102;UBERON:0001474!4.26e-30!86;UBERON:0002193!1.11e-28!112;UBERON:0004765!1.66e-27!101;UBERON:0001434!1.66e-27!101;UBERON:0002405!1.55e-25!115;UBERON:0002204!7.26e-15!167;UBERON:0003081!3.95e-10!216;UBERON:0000062!9.79e-08!511;UBERON:0002384!5.57e-07!375 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,6.47e-71,76;UBERON:0001474,1.79e-65,82;UBERON:0004765,2.49e-59,90;UBERON:0002405,2.69e-57,93;UBERON:0002390,3.52e-54,98;UBERON:0003061,3.52e-54,98;UBERON:0001434,5.09e-53,100;UBERON:0002193,8.40e-49,108;UBERON:0002204,4.47e-30,167;UBERON:0003081,5.92e-24,203;UBERON:0000926,8.73e-14,315;UBERON:0004120,8.73e-14,315;UBERON:0006603,8.73e-14,315;UBERON:0002384,5.61e-11,371 | |||
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| ||
|short_description=p15@LGALS3 | |||
}} | }} |
Latest revision as of 16:10, 24 September 2015
Short description: | p15@LGALS3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_15_at_LGALS3_5end |
Coexpression cluster: | C244_CD14_Monocytederived_Hepatocyte_heart_Neutrophils_acute_Macrophage |
Association with transcript: | -450bp_to_NR_003225_5end |
EntrezGene: | LGALS3 |
HGNC: | 6563 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 5.48e-124 | 42 |
CD14-positive, CD16-negative classical monocyte | 5.48e-124 | 42 |
defensive cell | 2.32e-116 | 48 |
phagocyte | 2.32e-116 | 48 |
monopoietic cell | 3.10e-92 | 59 |
monocyte | 3.10e-92 | 59 |
monoblast | 3.10e-92 | 59 |
promonocyte | 3.10e-92 | 59 |
macrophage dendritic cell progenitor | 4.04e-89 | 61 |
myeloid lineage restricted progenitor cell | 3.79e-82 | 66 |
granulocyte monocyte progenitor cell | 7.09e-81 | 67 |
myeloid leukocyte | 4.86e-75 | 72 |
myeloid cell | 8.40e-49 | 108 |
common myeloid progenitor | 8.40e-49 | 108 |
nongranular leukocyte | 1.38e-45 | 115 |
hematopoietic lineage restricted progenitor cell | 1.61e-43 | 120 |
leukocyte | 6.54e-38 | 136 |
hematopoietic oligopotent progenitor cell | 2.33e-31 | 161 |
hematopoietic multipotent progenitor cell | 2.33e-31 | 161 |
hematopoietic stem cell | 7.17e-30 | 168 |
hematopoietic cell | 3.96e-28 | 177 |
mesenchymal cell | 9.75e-12 | 354 |
connective tissue cell | 2.04e-11 | 361 |
motile cell | 2.78e-10 | 386 |
multi fate stem cell | 6.83e-09 | 427 |
somatic stem cell | 1.06e-08 | 433 |
stem cell | 1.88e-08 | 441 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 6.47e-71 | 76 |
bone element | 1.79e-65 | 82 |
skeletal element | 2.49e-59 | 90 |
immune system | 2.69e-57 | 93 |
hematopoietic system | 3.52e-54 | 98 |
blood island | 3.52e-54 | 98 |
skeletal system | 5.09e-53 | 100 |
hemolymphoid system | 8.40e-49 | 108 |
musculoskeletal system | 4.47e-30 | 167 |
lateral plate mesoderm | 5.92e-24 | 203 |
mesoderm | 8.73e-14 | 315 |
mesoderm-derived structure | 8.73e-14 | 315 |
presumptive mesoderm | 8.73e-14 | 315 |
connective tissue | 5.61e-11 | 371 |